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Conserved domains on  [gi|974143255|gb|AIS25828|]
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cytochrome b, partial [Haemoproteus belopolskyi]

Protein Classification

cytochrome b( domain architecture ID 13284717)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
36-80 4.31e-18

Cytochrome b(C-terminal)/b6/petD;


:

Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 72.90  E-value: 4.31e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 974143255   36 DRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL 80
Cdd:pfam00032   3 NPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLL 47
cytochrome_b_C super family cl00193
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-95 6.05e-17

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


The actual alignment was detected with superfamily member cd00290:

Pssm-ID: 469649 [Multi-domain]  Cd Length: 147  Bit Score: 71.14  E-value: 6.05e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLLAEQ 83
Cdd:cd00290   22 DLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNKLLGVLAMAASILSLFLVPFL 101

                         90
                 ....*....|..
gi 974143255  84 RNLTSLIQFKFI 95
Cdd:cd00290  102 ENSNKRSQFRPL 113
 
Name Accession Description Interval E-value
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
36-80 4.31e-18

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 72.90  E-value: 4.31e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 974143255   36 DRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL 80
Cdd:pfam00032   3 NPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLL 47
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-95 6.05e-17

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 71.14  E-value: 6.05e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLLAEQ 83
Cdd:cd00290   22 DLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNKLLGVLAMAASILSLFLVPFL 101

                         90
                 ....*....|..
gi 974143255  84 RNLTSLIQFKFI 95
Cdd:cd00290  102 ENSNKRSQFRPL 113
CYTB MTH00191
cytochrome b; Provisional
 4-96 1.28e-15

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 70.71  E-value: 1.28e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL--- 80
Cdd:MTH00191 225 DILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLpll 304

                         90
                 ....*....|....*...
gi 974143255  81 --AEQRNLTSLIQFKFIF 96
Cdd:MTH00191 305 htSKQRSNTFRPLTQVVF 322
CYTB MTH00016
cytochrome b; Validated
 4-80 1.73e-15

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 70.48  E-value: 1.73e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL 80
Cdd:MTH00016 229 DIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFL 305
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-80 2.74e-11

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 58.65  E-value: 2.74e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 974143255  22 GILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIP--NKTAGLLVMIASLQLLFLL 80
Cdd:COG1290  260 FFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 9-72 4.26e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 45.56  E-value: 4.26e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255    9 NNILVIF---LSQSLFGILPLAHPDNAIV---VDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIA 72
Cdd:TIGR01156  34 NDLLYIFpvvILGTIACVVGLAVLDPAMIgepANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
 
Name Accession Description Interval E-value
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
36-80 4.31e-18

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 72.90  E-value: 4.31e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 974143255   36 DRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL 80
Cdd:pfam00032   3 NPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLL 47
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-95 6.05e-17

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 71.14  E-value: 6.05e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLLAEQ 83
Cdd:cd00290   22 DLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNKLLGVLAMAASILSLFLVPFL 101

                         90
                 ....*....|..
gi 974143255  84 RNLTSLIQFKFI 95
Cdd:cd00290  102 ENSNKRSQFRPL 113
CYTB MTH00191
cytochrome b; Provisional
 4-96 1.28e-15

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 70.71  E-value: 1.28e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL--- 80
Cdd:MTH00191 225 DILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLpll 304

                         90
                 ....*....|....*...
gi 974143255  81 --AEQRNLTSLIQFKFIF 96
Cdd:MTH00191 305 htSKQRSNTFRPLTQVVF 322
CYTB MTH00016
cytochrome b; Validated
 4-80 1.73e-15

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 70.48  E-value: 1.73e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL 80
Cdd:MTH00016 229 DIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFL 305
CYTB MTH00131
cytochrome b; Provisional
 4-94 9.60e-15

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 68.14  E-value: 9.60e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL--- 80
Cdd:MTH00131 228 DLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVpil 307

                         90
                 ....*....|....*...
gi 974143255  81 --AEQRNLT--SLIQFKF 94
Cdd:MTH00131 308 htSKQRGLTfrPLTQFLF 325
CYTB MTH00074
cytochrome b; Provisional
 4-87 3.57e-13

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 63.93  E-value: 3.57e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL--- 80
Cdd:MTH00074 229 DLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIpml 308


                 ....*....
gi 974143255  81 --AEQRNLT 87
Cdd:MTH00074 309 htSKQRSLM 317
CYTB MTH00034
cytochrome b; Validated
 4-80 4.18e-13

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 63.57  E-value: 4.18e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL 80
Cdd:MTH00034 228 DLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLV 304
CYTB MTH00022
cytochrome b; Validated
 4-80 1.14e-12

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 62.41  E-value: 1.14e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL 80
Cdd:MTH00022 227 DWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFL 303
CYTB MTH00156
cytochrome b; Provisional
 4-80 1.20e-12

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 62.11  E-value: 1.20e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL 80
Cdd:MTH00156 218 DLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMIL 294
CYTB MTH00145
cytochrome b; Provisional
 4-80 1.54e-12

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 62.23  E-value: 1.54e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL 80
Cdd:MTH00145 229 DLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFL 305
CYTB MTH00100
cytochrome b; Provisional
 4-87 3.63e-12

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 61.19  E-value: 3.63e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL--- 80
Cdd:MTH00100 228 DILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIpll 307


                 ....*....
gi 974143255  81 --AEQRNLT 87
Cdd:MTH00100 308 htSKQRSMM 316
CYTB MTH00119
cytochrome b; Provisional
 4-87 9.26e-12

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 59.91  E-value: 9.26e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255   4 DIKGFNNILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL--- 80
Cdd:MTH00119 229 DLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMpfl 308


                 ....*....
gi 974143255  81 --AEQRNLT 87
Cdd:MTH00119 309 htSKQRSMT 317
CYTB MTH00224
cytochrome b; Provisional
 26-80 2.06e-11

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 58.78  E-value: 2.06e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 974143255  26 LAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL 80
Cdd:MTH00224 251 FTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFIL 305
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-80 2.74e-11

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 58.65  E-value: 2.74e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 974143255  22 GILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIP--NKTAGLLVMIASLQLLFLL 80
Cdd:COG1290  260 FFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320
CYTB MTH00086
cytochrome b; Provisional
 11-89 1.39e-10

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 56.49  E-value: 1.39e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 974143255  11 ILVIFLSQSLFGILPLAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLLAEQRNLTSL 89
Cdd:MTH00086 223 FWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSC 301
CYTB MTH00033
cytochrome b; Provisional
 4-80 1.54e-10

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 56.48  E-value: 1.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255   4 DIKGFnniLVIFLSQSLFGILP-----LAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLF 78
Cdd:MTH00033 225 DILGF---LILFGVFVIIGIEPrietlLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLL 301


                 ..
gi 974143255  79 LL 80
Cdd:MTH00033 302 LM 303
CYTB MTH00053
cytochrome b; Provisional
 11-80 5.12e-10

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 55.10  E-value: 5.12e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 974143255  11 ILVIFLSQSLFgILP--LAHPDNAIVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFLL 80
Cdd:MTH00053 235 ILLIILSIIVF-LFPysLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFL 305
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 9-72 1.11e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 52.49  E-value: 1.11e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255   9 NNILVIF---LSQSLFGILPLAHPDNAIV---VDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIA 72
Cdd:COG5679   35 NDLLYIFpvvILGTIALCIGLAVLDPAMMgepADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAA 104
petD CHL00058
cytochrome b6/f complex subunit IV
 36-72 2.68e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 48.84  E-value: 2.68e-08
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 974143255  36 DRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIA 72
Cdd:CHL00058  67 DPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 9-72 4.26e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 45.56  E-value: 4.26e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 974143255    9 NNILVIF---LSQSLFGILPLAHPDNAIV---VDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIA 72
Cdd:TIGR01156  34 NDLLYIFpvvILGTIACVVGLAVLDPAMIgepANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
CYTB MTH00046
cytochrome b; Validated
 33-79 7.37e-07

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 45.74  E-value: 7.37e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 974143255  33 IVVDRYVTPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMIASLQLLFL 79
Cdd:MTH00046 249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWV 295
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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