|
Name |
Accession |
Description |
Interval |
E-value |
| MtnA |
COG0182 |
5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a ... |
5-333 |
0e+00 |
|
5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a paralog of eIF-2B alpha subunit [Amino acid transport and metabolism];
Pssm-ID: 439952 Cd Length: 343 Bit Score: 514.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 5 RTIWWEEDGVGLIEQTLLPEEYREVVCSDVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAAS 84
Cdd:COG0182 4 RTIWWDGGALVLLDQTLLPHEEEYVELTTVEDVAEAIRDMVVRGAPAIGVAAAYGVALAAREAAADDREEFLAELEEAAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 85 TLRSARPTAVNLAWGVDRVLSAIQPVSDPVDAAERALTMAESIADEDEATCRRIGSHGAPLLPDDCTVLTHCNAGALACA 164
Cdd:COG0182 84 YLAATRPTAVNLFWALDRMLAALEELPSVEEIREALLAEALAIADEDVAANRAIGEHGAELIPDGDTILTHCNAGALATV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 165 AWGTALGVIRSAAEEGKNIRVISCETRPLLQGSRLTAWELSRDGIPVTTIIDSEAAYLMQRGEIDCVIVGADRICTDG-V 243
Cdd:COG0182 164 GYGTALGVIRAAHEAGKLIHVYADETRPLLQGARLTAWELMQDGIPVTLITDNAAGHLMQRGKVDAVIVGADRIAANGdV 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 244 FNKIGTYMHAVSASYHQIPFYVAAPRSTFDPE-HRMADIIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPFSLIAAI 322
Cdd:COG0182 244 ANKIGTYGLAVLAKHHGIPFYVAAPTSTIDLSlPDGEDIPIEERDPDEVTHVGGRRIAPEGVPVYNPAFDVTPAELITAI 323
|
330
....*....|.
gi 973165470 323 ITEDGLIREPF 333
Cdd:COG0182 324 ITEKGVIRPPY 334
|
|
| PRK06036 |
PRK06036 |
S-methyl-5-thioribose-1-phosphate isomerase; |
5-333 |
9.63e-159 |
|
S-methyl-5-thioribose-1-phosphate isomerase;
Pssm-ID: 180362 Cd Length: 339 Bit Score: 447.63 E-value: 9.63e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 5 RTIWW--EEDGVGLIEQTLLPEEYREVVCSDVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEA 82
Cdd:PRK06036 2 RTIDWndESNSVKLIDQTLLPEEYKVIECKTLESLCEAIKSLRVRGAPALGAAGGYGIALAARLSKAKDVDELLKDLKVA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 83 ASTLRSARPTAVNLAWGVDRVLSAIQPVSDPVDAAERALTMAESIADEDEATCRRIGSHGAPLLPDDCTVLTHCNAGALA 162
Cdd:PRK06036 82 AETLKSTRPTAVNLSWGVDRVLKAALDAEDVEEIRDIALREAERIAEEDVARNKLIGKHGAKLLEDGDTVLTHCNAGRLA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 163 CAAWGTALGVIRSAAEEGKNIRVISCETRPLLQGSRLTAWELSRDGIPVTTIIDSEAAYLMQRGEIDCVIVGADRICTDG 242
Cdd:PRK06036 162 CVDWGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDKVIVGADRITRDA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 243 VFNKIGTYMHAVSASYHQIPFYVAAPRSTFDPEHRMADIIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPFSLIAAI 322
Cdd:PRK06036 242 VFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEGSVKIEERDPDELRYCGKTQIAPKDVPVYNPAFDATPMENVTAI 321
|
330
....*....|.
gi 973165470 323 ITEDGLIREPF 333
Cdd:PRK06036 322 ITEKGVFYPPF 332
|
|
| salvage_mtnA |
TIGR00512 |
S-methyl-5-thioribose-1-phosphate isomerase; The delineation of this family was based in part ... |
5-330 |
1.92e-139 |
|
S-methyl-5-thioribose-1-phosphate isomerase; The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family]
Pssm-ID: 273112 [Multi-domain] Cd Length: 335 Bit Score: 398.55 E-value: 1.92e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 5 RTIWWEEDGVGLIEQTLLPEEYREVVCSDVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAAS 84
Cdd:TIGR00512 1 RAIKWSRGSLEILDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAIGIVAAYGLALAAREGETDEGEEFKAFLEEKLQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 85 TLRSARPTAVNLAWGVDRVLSAIQPVSDPVDAAERALTMAESIADEDEATCRRIGSHGAPLLPD------DCTVLTHCNA 158
Cdd:TIGR00512 81 YLVSSRPTAVNLSWALDRMRAALREAKTVADIKEALLAEAERILEEDLEDNRAIGENGAALIKKgvaakePVRVLTHCNT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 159 GALACAAWGTALGVIRSAAEEGKNIRVISCETRPLLQGSRLTAWELSRDGIPVTTIIDSEAAYLMQRGEIDCVIVGADRI 238
Cdd:TIGR00512 161 GSLATAGYGTALGVIRSAHEKGRLEHVYADETRPYNQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 239 CTDG-VFNKIGTYMHAVSASYHQIPFYVAAPRSTFDPE-HRMADIIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPF 316
Cdd:TIGR00512 241 AANGdTANKIGTYQLAILAKHHGVPFYVAAPTSTIDLElADGAEIPIEERPPEEVTHVGGVRIAPPGIGVWNPAFDVTPA 320
|
330
....*....|....
gi 973165470 317 SLIAAIITEDGLIR 330
Cdd:TIGR00512 321 ELITGIITEKGVIT 334
|
|
| IF-2B |
pfam01008 |
Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and ... |
45-329 |
3.88e-92 |
|
Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft.
Pssm-ID: 395798 [Multi-domain] Cd Length: 281 Bit Score: 276.10 E-value: 3.88e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 45 EVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAASTLRSARPTAVNLAWGVDRVL---SAIQPVSDPVDAAERAL 121
Cdd:pfam01008 1 KVRGSPAIAIAALEGLLLVIQDARTPTVAELKEQLRSAIEFLISARPTAVSLGNAIDRLLrivLALHSSSDVEEAKESLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 122 TMAESIADEDEATCRRIGSHGAPLLPDDCTVLTHCNAgalacaawGTALGVIRSAAEEGKNIRVISCETRPLLQGsRLTA 201
Cdd:pfam01008 81 EAADEFIDEIEEARRKIGAIAAELIKDGDTILTHCNS--------GTVLGVLRAAHKEGKRFRVIVTESRPRLQG-RLTA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 202 WELSRDGIPVTTIIDSEAAYLMQRgeIDCVIVGADRICTDG-VFNKIGTYMHAVSASYHQIPFYVAAPRSTFDPEHRM-A 279
Cdd:pfam01008 152 KELVQAGIPVTLITDSAVGYVMQE--VDKVIVGADRILANGgIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLdE 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 973165470 280 DIIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPFSLIAAIITEDGLI 329
Cdd:pfam01008 230 DIFIEERDPEEVLYRTGVRIAPPNLKVRNPAFDYTPPELITLIITEVGVL 279
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| MtnA |
COG0182 |
5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a ... |
5-333 |
0e+00 |
|
5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a paralog of eIF-2B alpha subunit [Amino acid transport and metabolism];
Pssm-ID: 439952 Cd Length: 343 Bit Score: 514.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 5 RTIWWEEDGVGLIEQTLLPEEYREVVCSDVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAAS 84
Cdd:COG0182 4 RTIWWDGGALVLLDQTLLPHEEEYVELTTVEDVAEAIRDMVVRGAPAIGVAAAYGVALAAREAAADDREEFLAELEEAAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 85 TLRSARPTAVNLAWGVDRVLSAIQPVSDPVDAAERALTMAESIADEDEATCRRIGSHGAPLLPDDCTVLTHCNAGALACA 164
Cdd:COG0182 84 YLAATRPTAVNLFWALDRMLAALEELPSVEEIREALLAEALAIADEDVAANRAIGEHGAELIPDGDTILTHCNAGALATV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 165 AWGTALGVIRSAAEEGKNIRVISCETRPLLQGSRLTAWELSRDGIPVTTIIDSEAAYLMQRGEIDCVIVGADRICTDG-V 243
Cdd:COG0182 164 GYGTALGVIRAAHEAGKLIHVYADETRPLLQGARLTAWELMQDGIPVTLITDNAAGHLMQRGKVDAVIVGADRIAANGdV 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 244 FNKIGTYMHAVSASYHQIPFYVAAPRSTFDPE-HRMADIIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPFSLIAAI 322
Cdd:COG0182 244 ANKIGTYGLAVLAKHHGIPFYVAAPTSTIDLSlPDGEDIPIEERDPDEVTHVGGRRIAPEGVPVYNPAFDVTPAELITAI 323
|
330
....*....|.
gi 973165470 323 ITEDGLIREPF 333
Cdd:COG0182 324 ITEKGVIRPPY 334
|
|
| PRK06036 |
PRK06036 |
S-methyl-5-thioribose-1-phosphate isomerase; |
5-333 |
9.63e-159 |
|
S-methyl-5-thioribose-1-phosphate isomerase;
Pssm-ID: 180362 Cd Length: 339 Bit Score: 447.63 E-value: 9.63e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 5 RTIWW--EEDGVGLIEQTLLPEEYREVVCSDVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEA 82
Cdd:PRK06036 2 RTIDWndESNSVKLIDQTLLPEEYKVIECKTLESLCEAIKSLRVRGAPALGAAGGYGIALAARLSKAKDVDELLKDLKVA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 83 ASTLRSARPTAVNLAWGVDRVLSAIQPVSDPVDAAERALTMAESIADEDEATCRRIGSHGAPLLPDDCTVLTHCNAGALA 162
Cdd:PRK06036 82 AETLKSTRPTAVNLSWGVDRVLKAALDAEDVEEIRDIALREAERIAEEDVARNKLIGKHGAKLLEDGDTVLTHCNAGRLA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 163 CAAWGTALGVIRSAAEEGKNIRVISCETRPLLQGSRLTAWELSRDGIPVTTIIDSEAAYLMQRGEIDCVIVGADRICTDG 242
Cdd:PRK06036 162 CVDWGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDKVIVGADRITRDA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 243 VFNKIGTYMHAVSASYHQIPFYVAAPRSTFDPEHRMADIIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPFSLIAAI 322
Cdd:PRK06036 242 VFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEGSVKIEERDPDELRYCGKTQIAPKDVPVYNPAFDATPMENVTAI 321
|
330
....*....|.
gi 973165470 323 ITEDGLIREPF 333
Cdd:PRK06036 322 ITEKGVFYPPF 332
|
|
| mtnA |
PRK05720 |
methylthioribose-1-phosphate isomerase; Reviewed |
5-333 |
2.06e-143 |
|
methylthioribose-1-phosphate isomerase; Reviewed
Pssm-ID: 235578 Cd Length: 344 Bit Score: 408.82 E-value: 2.06e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 5 RTIWWEEDGVGLIEQTLLPEEYREVVCSDVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAAS 84
Cdd:PRK05720 4 RPVAWKDGAVRILDQRKLPHEVEYVELTTAEEVADAIRDMVVRGAPAIGIAAAYGMALAAREDASDDGEEFLKKLEEAAA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 85 TLRSARPTAVNLAWGVDRVLSAIQPVSdPVDAAERALTMAESIADEDEATCRRIGSHGAPLLPDDCTVLTHCNAGALACA 164
Cdd:PRK05720 84 YLAASRPTAVNLFWALDRMREVLAPLP-GAERKAALEEEAIEIHEEDVEINRAIGEHGLTLIRKGQGILTHCNAGWLATA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 165 AWGTALGVIRSAAEEGKNIRVISCETRPLLQGSRLTAWELSRDGIPVTTIIDSEAAYLMQRGEIDCVIVGADRICTDG-V 243
Cdd:PRK05720 163 GYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTGKIDAVIVGADRIAANGdV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 244 FNKIGTYMHAVSASYHQIPFYVAAPRSTFDPE-HRMADIIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPFSLIAAI 322
Cdd:PRK05720 243 ANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTlADGKEIPIEERDPEEVTEVGGVRIAPEGVKVYNPAFDVTPAELITGI 322
|
330
....*....|.
gi 973165470 323 ITEDGLIREPF 333
Cdd:PRK05720 323 ITEKGIVAPPD 333
|
|
| salvage_mtnA |
TIGR00512 |
S-methyl-5-thioribose-1-phosphate isomerase; The delineation of this family was based in part ... |
5-330 |
1.92e-139 |
|
S-methyl-5-thioribose-1-phosphate isomerase; The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family]
Pssm-ID: 273112 [Multi-domain] Cd Length: 335 Bit Score: 398.55 E-value: 1.92e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 5 RTIWWEEDGVGLIEQTLLPEEYREVVCSDVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAAS 84
Cdd:TIGR00512 1 RAIKWSRGSLEILDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAIGIVAAYGLALAAREGETDEGEEFKAFLEEKLQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 85 TLRSARPTAVNLAWGVDRVLSAIQPVSDPVDAAERALTMAESIADEDEATCRRIGSHGAPLLPD------DCTVLTHCNA 158
Cdd:TIGR00512 81 YLVSSRPTAVNLSWALDRMRAALREAKTVADIKEALLAEAERILEEDLEDNRAIGENGAALIKKgvaakePVRVLTHCNT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 159 GALACAAWGTALGVIRSAAEEGKNIRVISCETRPLLQGSRLTAWELSRDGIPVTTIIDSEAAYLMQRGEIDCVIVGADRI 238
Cdd:TIGR00512 161 GSLATAGYGTALGVIRSAHEKGRLEHVYADETRPYNQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 239 CTDG-VFNKIGTYMHAVSASYHQIPFYVAAPRSTFDPE-HRMADIIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPF 316
Cdd:TIGR00512 241 AANGdTANKIGTYQLAILAKHHGVPFYVAAPTSTIDLElADGAEIPIEERPPEEVTHVGGVRIAPPGIGVWNPAFDVTPA 320
|
330
....*....|....
gi 973165470 317 SLIAAIITEDGLIR 330
Cdd:TIGR00512 321 ELITGIITEKGVIT 334
|
|
| eIF-2B_rel |
TIGR00524 |
eIF-2B alpha/beta/delta-related uncharacterized proteins; This model, eIF-2B_rel, describes ... |
31-329 |
1.70e-134 |
|
eIF-2B alpha/beta/delta-related uncharacterized proteins; This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins. [Unknown function, General]
Pssm-ID: 273119 [Multi-domain] Cd Length: 303 Bit Score: 384.87 E-value: 1.70e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 31 CSDVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAASTLRSARPTAVNLAWGVDRVLSAIQPV 110
Cdd:TIGR00524 1 CRTYEDVAEAIKSMVVRGAPAIGVAAAYGLALAALKISHVNVEEFKEDLEKAADFLLSTRPTAVNLFWALDRVLNSLKSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 111 SDPVDAAERALTMAESIADEDEATCRRIGSHGAPLLPDDCTVLTHCNAGALACAAWGTALGVIRSAAEEGKNIRVISCET 190
Cdd:TIGR00524 81 ESVEEFKESLLREAIEIINEDLETNRKIGENGAKLIKDGDTVLTHCNAGALATSGYGTALGVIRSAWEDGKRIRVIADET 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 191 RPLLQGSRLTAWELSRDGIPVTTIIDSEAAYLMQRGEIDCVIVGADRICTDG-VFNKIGTYMHAVSASYHQIPFYVAAPR 269
Cdd:TIGR00524 161 RPRNQGSRLTAWELVQDGIPVTLITDSAAAYFMQTGEIDAVIVGADRIARNGdVANKIGTYQLAVLAKEFRIPFFVAAPL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 973165470 270 STFDPEHRM-ADIIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPFSLIAAIITEDGLI 329
Cdd:TIGR00524 241 STFDPKTSTgEDIIIEERDPEEVAQVGGVRIAPLGVKVYNPAFDITPHDLIDAIITEKGII 301
|
|
| PRK08334 |
PRK08334 |
S-methyl-5-thioribose-1-phosphate isomerase; |
5-333 |
3.53e-93 |
|
S-methyl-5-thioribose-1-phosphate isomerase;
Pssm-ID: 169386 Cd Length: 356 Bit Score: 281.85 E-value: 3.53e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 5 RTIWWEEDGVGLIEQTLLPEEYREVVCSDVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAAS 84
Cdd:PRK08334 15 RSVEYEEGKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMTVRGAPAIGAAAAFGLALYAETSKAKTKDEFMDGFYKAYE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 85 TLRSARPTAVNLAWGVDRVLSAIQP-VSDPVDAAERALTM-AESIADEDEATCRRIGSHGAPLLPDDcTVLTHCNAGALA 162
Cdd:PRK08334 95 TLKNTRPTAVNLFWALNRIKKLVEEhLEDPLDEIKRLIVEeAQKIADEDVEANLRMGHYGAEVLPEG-NVLTHCNAGSLA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 163 CAAWGTALGVIRSAAEEGKNIRVISCETRPLLQGSRLTAWELSRDGIPVTTIIDSEAAYLMQRGEIDCVIVGADRICTDG 242
Cdd:PRK08334 174 TVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVDAIIVGADRIVANG 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 243 VF-NKIGTYMHAVSASYHQIPFYVAAPRSTFDPEHRMA-DIIVEERGREEVASLFGRTTVPDaVPVVNYAFDGTPFSLIA 320
Cdd:PRK08334 254 DFaNKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGkEIPIEERSPEEVLTCGGCRIAPD-VDVYNPAFDVTPHKYLT 332
|
330
....*....|...
gi 973165470 321 AIITEDGLIREPF 333
Cdd:PRK08334 333 GIITDRGVVWPPF 345
|
|
| IF-2B |
pfam01008 |
Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and ... |
45-329 |
3.88e-92 |
|
Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft.
Pssm-ID: 395798 [Multi-domain] Cd Length: 281 Bit Score: 276.10 E-value: 3.88e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 45 EVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAASTLRSARPTAVNLAWGVDRVL---SAIQPVSDPVDAAERAL 121
Cdd:pfam01008 1 KVRGSPAIAIAALEGLLLVIQDARTPTVAELKEQLRSAIEFLISARPTAVSLGNAIDRLLrivLALHSSSDVEEAKESLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 122 TMAESIADEDEATCRRIGSHGAPLLPDDCTVLTHCNAgalacaawGTALGVIRSAAEEGKNIRVISCETRPLLQGsRLTA 201
Cdd:pfam01008 81 EAADEFIDEIEEARRKIGAIAAELIKDGDTILTHCNS--------GTVLGVLRAAHKEGKRFRVIVTESRPRLQG-RLTA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 202 WELSRDGIPVTTIIDSEAAYLMQRgeIDCVIVGADRICTDG-VFNKIGTYMHAVSASYHQIPFYVAAPRSTFDPEHRM-A 279
Cdd:pfam01008 152 KELVQAGIPVTLITDSAVGYVMQE--VDKVIVGADRILANGgIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLdE 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 973165470 280 DIIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPFSLIAAIITEDGLI 329
Cdd:pfam01008 230 DIFIEERDPEEVLYRTGVRIAPPNLKVRNPAFDYTPPELITLIITEVGVL 279
|
|
| PRK06371 |
PRK06371 |
S-methyl-5-thioribose-1-phosphate isomerase; |
5-330 |
1.66e-89 |
|
S-methyl-5-thioribose-1-phosphate isomerase;
Pssm-ID: 180547 Cd Length: 329 Bit Score: 271.39 E-value: 1.66e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 5 RTIWWEEDGVGLIEQTLLPEEYREVVCSDVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNalegsesafSASVNEAAS 84
Cdd:PRK06371 13 KAVWYEDGEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMVVRGAPAIGVTAAYGLAMASKN---------GENMDEAVE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 85 TLRSARPTAVNLAWGVDrvlsAIQPVSDPVDAAERaltmaesIADEDEATCRRIGSHGAPLLPDDCTVLTHCNAGALACA 164
Cdd:PRK06371 84 KIRSTRPTAYDLFKAIR----YMNSNEFDMNAARR-------YAMEIIGRSKKIGEYGNELIKNGARILTHCNAGALAVV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 165 AWGTALGVIRSAAEEGKNIRVISCETRPLLQGSRLTAWELSRDGIPVTTIIDSEAAYLMQRGEIDCVIVGADRICTDGVF 244
Cdd:PRK06371 153 DWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMRKKEIDLVIVGADRIASNGDF 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 245 -NKIGTYMHAVSASYHQIPFYVAAPRSTFDPEHRMAD-IIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPFSLIAAI 322
Cdd:PRK06371 233 aNKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDeIPIEERDENEVLEINGCRIGPQESHARNPAFDVTPNEYVTGF 312
|
....*...
gi 973165470 323 ITEDGLIR 330
Cdd:PRK06371 313 ITEYGIFK 320
|
|
| PRK05772 |
PRK05772 |
S-methyl-5-thioribose-1-phosphate isomerase; |
5-334 |
6.16e-85 |
|
S-methyl-5-thioribose-1-phosphate isomerase;
Pssm-ID: 168237 Cd Length: 363 Bit Score: 260.85 E-value: 6.16e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 5 RTIWWEEDGVGLIEQTLLPEEYREVVCSDVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAAS 84
Cdd:PRK05772 17 LPIIWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQVRGAPAIGITAGYGMVLALIENNVKTLDDAIRELTRAKT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 85 TLRSARPTAVNLAWGVDRVL-----SAIQPVSDPVDAAERALTM-AESIADEDEATCRRIGSHGAPLLPDDCTVLTHCNA 158
Cdd:PRK05772 97 ILDSARPTAVNLVWATSRMLnkaknTVESGNAKSVNELIELLKVeAKKIFEEEYDAEIQMGLYGLEKLNDGDTVLTQCNA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 159 GALACA-AWGTALGVIRSAAEEGKNIRVISCETRPLLQGSRLTAWELSRDGIPVTTIIDSEAAYLMQRGEIDCVIVGADR 237
Cdd:PRK05772 177 GGLATGtGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMYKDMVNNVMVGADR 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 238 ICTDG-VFNKIGTYMHAVSASYHQIPFYVAAPRSTFDPEHRMADIIVEERGREEVASLFGRTTVPDAVPVVNYAFDGTPF 316
Cdd:PRK05772 257 ILRDGhVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDVNDVKIEERDPNEVRTIRGVPITPEDVNVYNPVFDVTPP 336
|
330
....*....|....*...
gi 973165470 317 SLIAAIITEDGLIREPFH 334
Cdd:PRK05772 337 KYITGIITEKGIIYPPFH 354
|
|
| GCD2 |
COG1184 |
Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ... |
33-329 |
1.15e-66 |
|
Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]; Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 440797 [Multi-domain] Cd Length: 304 Bit Score: 212.02 E-value: 1.15e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 33 DVPRLVQAIQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAASTLRSARPTAVNLAWGVDRVLSAIQPVSD 112
Cdd:COG1184 3 RVAETAEEIREMEIHGAARIARAAAEALRDLAERSRAADPEEFRRELEAAARALRRARPSAASLPNAVRRVLARVADGET 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 113 PVDAAERALTMAESIADEDEATCRRIGSHGAPLLPDDCTVLTHCNAgalacaawGTALGVIRSAAEEGKNIRVISCETRP 192
Cdd:COG1184 83 VEEAREAVLEAADEFIERAEEAKERAAEIAAKRIRDGDTILTHSNS--------STVLAAIEAAVPQGKDIRVYVTESRP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 193 LLQGsRLTAWELSRDGIPVTTIIDSEAAYLMqrGEIDCVIVGADRICTDG-VFNKIGTYMHAVSASYHQIPFYVAAPRST 271
Cdd:COG1184 155 RYQG-RITARELAEAGVPVTLIVDSAARHFL--KEVDRVVVGADTITADGaVVNKIGTSPLALAAREAGVPVTVAAETYK 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 973165470 272 FDPE-HRMADIivEERGREEVAslfgRTTVPDaVPVVNYAFDGTPFSLIAAIITEDGLI 329
Cdd:COG1184 232 FSPEtFELVEI--EERDPSEVY----DEEPEG-VTVRNPAFDVTPPDLIDAIITERGVL 283
|
|
| PRK08535 |
PRK08535 |
ribose 1,5-bisphosphate isomerase; |
41-329 |
7.49e-60 |
|
ribose 1,5-bisphosphate isomerase;
Pssm-ID: 236282 [Multi-domain] Cd Length: 310 Bit Score: 194.35 E-value: 7.49e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 41 IQRLEVRGAPALGVAGAYGVALACKNALEGSESAFSASVNEAASTLRSARPTAVNLAWGVDRVLSAIQpvSDPVDAAERA 120
Cdd:PRK08535 14 IKTMEIRGAGRIARAAAEALKDQAEKSDAESPEEFKAEMRAAANILISTRPTAVSLPNAVRYVMRYYS--GETVEEARES 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 121 LTMA--ESIADEDEATcRRIGSHGAPLLPDDCTVLTHCNAGAlacaawgtALGVIRSAAEEGKNIRVISCETRPLLQGsR 198
Cdd:PRK08535 92 VIERaeEFIESSENAV-EKIGEIGAKRIRDGDVIMTHCNSSA--------ALSVIKTAHEQGKDIEVIATETRPRNQG-H 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 199 LTAWELSRDGIPVTTIIDSEAAYLMQrgEIDCVIVGADRICTDG-VFNKIGTYMHAVSASYHQIPFYVAAPRSTFDPEHR 277
Cdd:PRK08535 162 ITAKELAEYGIPVTLIVDSAVRYFMK--DVDKVVVGADAITANGaVINKIGTSQIALAAHEARVPFMVAAETYKFSPKTL 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 973165470 278 MADII-VEERGREEVASLFGRTTVPDaVPVVNYAFDGTPFSLIAAIITEDGLI 329
Cdd:PRK08535 240 LGELVeIEERDPTEVLPEEILAKLPG-VKVRNPAFDVTPPEYIDAIITEIGAI 291
|
|
| PRK08335 |
PRK08335 |
translation initiation factor IF-2B subunit alpha; Validated |
21-332 |
6.87e-30 |
|
translation initiation factor IF-2B subunit alpha; Validated
Pssm-ID: 169387 Cd Length: 275 Bit Score: 115.26 E-value: 6.87e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 21 LLPEEYREvvcsdvprLVQAIQRLEVRGAPALGVAGAYgVALACKNALEGSEsafsasVNEAASTLRSARPtAVNLAWGV 100
Cdd:PRK08335 1 MLPPEVRE--------ILEEMKAERIRGASWLAKKGAE-AYLLLAEELDGEE------LENALKELREEIP-EVNPTMAS 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 101 DRVLSAIQPVSD-PVDAAERALtmaESIADEDEATcRRIGSHGAPLLPDDCTVLTHCNAGALacaawgtaLGVIRSAAEE 179
Cdd:PRK08335 65 LYNLARFIPITNnPELVKSRAE---EFLRLMEEAK-REIGNIGSELIDDGDVIITHSFSSAV--------LEILKTAKRK 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 180 GKNIRVISCETRPLLQGSRLtAWELSRDGIPVTTIIDSEAAYLMQRGEIdcVIVGADRICTDG-VFNKIGTYMHAVSASY 258
Cdd:PRK08335 133 GKRFKVILTESAPDYEGLAL-ANELEFLGIEFEVITDAQLGLFAKEATL--ALVGADNVTRDGyVVNKAGTYLLALACHD 209
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 973165470 259 HQIPFYVAAPRSTFDPEHRMADIIVEERGreevaslFGRttvpDAVPVVNYAFDGTPFSLIAAIITEDGLIREP 332
Cdd:PRK08335 210 NGVPFYVAAETFKFHPELKSEEVELVERP-------YAR----QGHRVRNVLFDVTPWKYVRGIITELGILVPP 272
|
|
| PRK06372 |
PRK06372 |
translation initiation factor IF-2B subunit delta; Provisional |
175-330 |
7.55e-12 |
|
translation initiation factor IF-2B subunit delta; Provisional
Pssm-ID: 235788 [Multi-domain] Cd Length: 253 Bit Score: 64.54 E-value: 7.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 175 SAAEEGKNIRVIscETRPLLQGSRLtAWELSRDGIPVTTIIDSEAAYLMQRgeIDCVIVGADRICTD-GVFNKIGTYMHA 253
Cdd:PRK06372 104 SSSEKIKSVYIL--ESRPMLEGIDM-AKLLVKSGIDVVLLTDASMCEAVLN--VDAVIVGSDSVLYDgGLIHKNGTFPLA 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 973165470 254 VSASYHQIPFYVAAPRSTFdpehrmadiiveERGREEVA----SLFGRTTVPDAVPVVNYAFDGTPFSLIAAIITEDGLI 329
Cdd:PRK06372 179 LCARYLKKPFYSLTISMKI------------ERNFLYSTypnfKNHPCSEWNIDIPCINRYFDKTPPDLIDYYINENGFV 246
|
.
gi 973165470 330 R 330
Cdd:PRK06372 247 K 247
|
|
|