NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|972781510|ref|NP_001305429|]
View 

large ribosomal subunit protein mL48 isoform 4 [Homo sapiens]

Protein Classification

uS10 family ribosomal protein( domain architecture ID 1081)

uS10 family ribosomal protein such as eukaryotic 40S ribosomal protein S20, bacterial 30S ribosomal protein S10, and mitochondrial 28S ribosomal protein S10

Gene Ontology:  GO:0003723|GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S10 super family cl46673
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 59-96 7.08e-04

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


The actual alignment was detected with superfamily member pfam00338:

Pssm-ID: 459769  Cd Length: 98  Bit Score: 36.31  E-value: 7.08e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 972781510   59 YKHLIkaeEISGLSATFAEIFLEIIQSSLPEGVRLSVK 96
Cdd:pfam00338  64 HKRLI---DIKDATPETVDALLRYLQLNLPEGVDVEVK 98
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 59-96 7.08e-04

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 36.31  E-value: 7.08e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 972781510   59 YKHLIkaeEISGLSATFAEIFLEIIQSSLPEGVRLSVK 96
Cdd:pfam00338  64 HKRLI---DIKDATPETVDALLRYLQLNLPEGVDVEVK 98
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 59-96 7.08e-04

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 36.31  E-value: 7.08e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 972781510   59 YKHLIkaeEISGLSATFAEIFLEIIQSSLPEGVRLSVK 96
Cdd:pfam00338  64 HKRLI---DIKDATPETVDALLRYLQLNLPEGVDVEVK 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH