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Conserved domains on  [gi|972623428|dbj|BAU24098|]
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tungsten formylmethanofuran dehydrogenase [Caldimicrobium thiodismutans]

Protein Classification

ferredoxin family protein( domain architecture ID 11439153)

ferredoxin-like protein that may be a iron-sulfur cluster-containing protein which mediates electron transfer

CATH:  3.30.70.20
Gene Ontology:  GO:0046872|GO:0009055|GO:0051536
PubMed:  3078742|2185975

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 1-59 8.02e-11

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


:

Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 51.63  E-value: 8.02e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 972623428  1 MKIKILEERCKGCGLCVEFCPKKVLSLSGKRnlqgyKVVYIANAEKCNACGICFLMCPE 59
Cdd:COG1146   1 MMPVIDTDKCIGCGACVEVCPVDVLELDEEG-----KKALVINPEECIGCGACELVCPV 54
 
Name Accession Description Interval E-value
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 1-59 8.02e-11

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 51.63  E-value: 8.02e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 972623428  1 MKIKILEERCKGCGLCVEFCPKKVLSLSGKRnlqgyKVVYIANAEKCNACGICFLMCPE 59
Cdd:COG1146   1 MMPVIDTDKCIGCGACVEVCPVDVLELDEEG-----KKALVINPEECIGCGACELVCPV 54
PRK13795 PRK13795
hypothetical protein; Provisional
 9-62 1.52e-08

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 48.84  E-value: 1.52e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 972623428   9 RCKGCGLCVEFCPKKVLSLSGKRnlqgyKVVYIaNAEKCNACGICFLMCPEVVF 62
Cdd:PRK13795 582 ECVGCGVCVGACPTGAIRIEEGK-----RKISV-DEEKCIHCGKCTEVCPVVKY 629
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 10-58 2.10e-05

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 37.51  E-value: 2.10e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 972623428  10 CKGCGLCVEFCPKKVLSLSGKRNLQGYKVVYIaNAEKCNACGICFLMCP 58
Cdd:pfam12838  1 CIGCGACVAACPVGAITLDEVGEKKGTKTVVI-DPERCVGCGACVAVCP 48
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 2-59 4.09e-05

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 38.15  E-value: 4.09e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 972623428   2 KIKILEERCKGCGLCVEFCPKKVLSLSGKRNLQGYK-VVYIANAEKCNACGICFLMCPE 59
Cdd:cd10549   34 GPEIDEDKCVFCGACVEVCPTGAIELTPEGKEYVPKeKEAEIDEEKCIGCGLCVKVCPV 92
 
Name Accession Description Interval E-value
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 1-59 8.02e-11

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 51.63  E-value: 8.02e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 972623428  1 MKIKILEERCKGCGLCVEFCPKKVLSLSGKRnlqgyKVVYIANAEKCNACGICFLMCPE 59
Cdd:COG1146   1 MMPVIDTDKCIGCGACVEVCPVDVLELDEEG-----KKALVINPEECIGCGACELVCPV 54
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 2-65 2.59e-10

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 50.43  E-value: 2.59e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 972623428  2 KIKILEERCKGCGLCVEFCPKKVLSLSGKRnlqgykvVYIaNAEKCNACGICFLMCPEVVFVEE 65
Cdd:COG2221   9 PPKIDEEKCIGCGLCVAVCPTGAISLDDGK-------LVI-DEEKCIGCGACIRVCPTGAIKGE 64
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 1-58 1.79e-09

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 48.50  E-value: 1.79e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 972623428  1 MKIKILEERCKGCGLCVEFCPKKVLSLsgkrnlqGYKVVYIaNAEKCNACGICFLMCP 58
Cdd:COG4231  15 MRYVIDEDKCTGCGACVKVCPADAIEE-------GDGKAVI-DPDLCIGCGSCVQVCP 64
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 1-59 3.12e-09

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 47.80  E-value: 3.12e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 972623428  1 MKIKILEERCKGCGLCVEFCPKKVLSLSGKRNlqgykvvYIANAEKCNACGICFLMCPE 59
Cdd:COG1149   4 KIPVIDEEKCIGCGLCVEVCPEGAIKLDDGGA-------PVVDPDLCTGCGACVGVCPT 55
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-59 1.32e-08

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 46.26  E-value: 1.32e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 972623428  1 MKIKILEERCKGCGLCVEFCPKKVLSLSGKrnlqgykvVYIANAEKCNACGICFLMCPE 59
Cdd:COG2768   4 GKPYVDEEKCIGCGACVKVCPVGAISIEDG--------KAVIDPEKCIGCGACIEVCPV 54
PRK13795 PRK13795
hypothetical protein; Provisional
 9-62 1.52e-08

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 48.84  E-value: 1.52e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 972623428   9 RCKGCGLCVEFCPKKVLSLSGKRnlqgyKVVYIaNAEKCNACGICFLMCPEVVF 62
Cdd:PRK13795 582 ECVGCGVCVGACPTGAIRIEEGK-----RKISV-DEEKCIHCGKCTEVCPVVKY 629
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 1-59 8.41e-08

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 44.27  E-value: 8.41e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 972623428  1 MKIKILEERCKGCGLCVEFCPKKVLSLSGKRnlqgykvVYIANAEKCNACGICFLMCPE 59
Cdd:COG1144  23 ERPVVDEDKCIGCGLCWIVCPDGAIRVDDGK-------YYGIDYDYCKGCGICAEVCPV 74
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
4-59 1.58e-07

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 46.01  E-value: 1.58e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 972623428   4 KILEERCKGCGLCVEFCPKKVLSLSGKRnlqgykVVYIaNAEKCNACGICFLMCPE 59
Cdd:COG1148  492 EVDPEKCTGCGRCVEVCPYGAISIDEKG------VAEV-NPALCKGCGTCAAACPS 540
oorD PRK09626
2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
 7-59 7.67e-07

2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed


Pssm-ID: 236597 [Multi-domain]  Cd Length: 103  Bit Score: 42.40  E-value: 7.67e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 972623428   7 EERCKGCGLCVEFCPKKVLSLSGKRNLQGYKVVYIANAEKCNACGICFLMCPE 59
Cdd:PRK09626  15 ESRCKACDICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPD 67
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 7-59 9.45e-07

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 41.27  E-value: 9.45e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 972623428  7 EERCKGCGLCVEFCPKKVLSLSGKRNlqgyKVVYIANAEKCNACGICFLMCPE 59
Cdd:COG1143   1 EDKCIGCGLCVRVCPVDAITIEDGEP----GKVYVIDPDKCIGCGLCVEVCPT 49
NapF COG1145
Ferredoxin [Energy production and conversion];
2-59 4.88e-06

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 41.63  E-value: 4.88e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 972623428   2 KIKILEERCKGCGLCVEFCPKKVLSLSGKrnlqgyKVVYIANAEKCNACGICFLMCPE 59
Cdd:COG1145  176 KAVIDAEKCIGCGLCVKVCPTGAIRLKDG------KPQIVVDPDKCIGCGACVKVCPV 227
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
1-58 1.99e-05

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 39.79  E-value: 1.99e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972623428   1 MKIKILE-ERCKG--CGL-CVEFCPkkvlslsgkRNLQGYKVVYIANA--------EKCNACGICFLMCP 58
Cdd:PRK13409   2 MRIAVVDyDRCQPkkCNYeCIKYCP---------VVRTGEETIEIDEDdgkpviseELCIGCGICVKKCP 62
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 10-58 2.10e-05

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 37.51  E-value: 2.10e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 972623428  10 CKGCGLCVEFCPKKVLSLSGKRNLQGYKVVYIaNAEKCNACGICFLMCP 58
Cdd:pfam12838  1 CIGCGACVAACPVGAITLDEVGEKKGTKTVVI-DPERCVGCGACVAVCP 48
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 2-59 4.09e-05

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 38.15  E-value: 4.09e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 972623428   2 KIKILEERCKGCGLCVEFCPKKVLSLSGKRNLQGYK-VVYIANAEKCNACGICFLMCPE 59
Cdd:cd10549   34 GPEIDEDKCVFCGACVEVCPTGAIELTPEGKEYVPKeKEAEIDEEKCIGCGLCVKVCPV 92
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
2-34 6.62e-05

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 38.69  E-value: 6.62e-05
                         10        20        30
                 ....*....|....*....|....*....|...
gi 972623428   2 KIKILEERCKGCGLCVEFCPKKVLSLSGKRNLQ 34
Cdd:COG1148  520 VAEVNPALCKGCGTCAAACPSGAISLKGFTDDQ 552
PRK00783 PRK00783
DNA-directed RNA polymerase subunit D; Provisional
 2-66 1.53e-04

DNA-directed RNA polymerase subunit D; Provisional


Pssm-ID: 234837 [Multi-domain]  Cd Length: 263  Bit Score: 37.56  E-value: 1.53e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 972623428   2 KIKIlEERCKGCGLCVEFCPKKVLSLSGKRnlqgykvVYIANAEKCNACGICFLMCPE-VVFVEED 66
Cdd:PRK00783 164 RIEV-SEDCDECEKCVEACPRGVLELKEGK-------LVVTDLLNCSLCKLCERACPGkAIRVSDD 221
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 3-58 1.64e-04

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 36.61  E-value: 1.64e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 972623428   3 IKILEERCKGCGLCVEFCPKKVLSLSGKRNLQGYKVVyiaNAEKCNACGICFLMCP 58
Cdd:cd10549    1 LKYDPEKCIGCGICVKACPTDAIELGPNGAIARGPEI---DEDKCVFCGACVEVCP 53
Rli1 COG1245
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...
 1-58 1.73e-04

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440858 [Multi-domain]  Cd Length: 592  Bit Score: 37.46  E-value: 1.73e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972623428   1 MKIKILE-ERCKG--CGL-CVEFCPkkvlslsgkRNLQGYKVVYIANA--------EKCNACGICFLMCP 58
Cdd:COG1245    2 MRIAVVDrDRCQPkkCNYeCIKYCP---------VNRTGKEAIEIDEDdgkpviseELCIGCGICVKKCP 62
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 1-58 4.42e-04

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 35.45  E-value: 4.42e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 972623428   1 MKIKILEERCKGCGLCVEFCPKKVLSLSGKrnlqgyKVVYIaNAEKCNACGICFLMCP 58
Cdd:cd10549   71 KEAEIDEEKCIGCGLCVKVCPVDAITLEDE------LEIVI-DKEKCIGCGICAEVCP 121
SIMIBI_bact_arch cd03110
bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily ...
 1-68 5.41e-04

bacterial and archaeal subfamily of SIMIBI; Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.


Pssm-ID: 349764 [Multi-domain]  Cd Length: 246  Bit Score: 35.82  E-value: 5.41e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 972623428   1 MKIKILEERCKGCGLCVEFCPKKVLSLSGKRNlqgykvvyIANAEKCNACGICFLMCPEVVFVEEDSP 68
Cdd:cd03110   57 KKAFIDQEKCIRCGNCERVCKFGAILEFFQKL--------IVDESLCEGCGACVIICPRGAIYLKDRD 116
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
2-58 8.73e-04

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 35.39  E-value: 8.73e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 972623428   2 KIKILEERCKGCGLCVEFCPKKVLSLSGKRnlqgykvVYIANaEKCNACGICFLMCP 58
Cdd:COG4624   85 SIIRDKEKCKNCYPCVRACPVKAIKVDDGK-------AEIDE-EKCISCGQCVAVCP 133
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 8-58 8.87e-04

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 35.24  E-value: 8.87e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 972623428   8 ERCKGCGLCVE------FCPKKVLSLSGKRnlQGYKVVYianaEKCNACGICFLMCP 58
Cdd:PRK12771 504 ARCLSCGNCFEcdncygACPQDAIIKLGPG--RRYHFDY----DKCTGCHICADVCP 554
PRK06991 PRK06991
electron transport complex subunit RsxB;
5-58 1.07e-03

electron transport complex subunit RsxB;


Pssm-ID: 235903 [Multi-domain]  Cd Length: 270  Bit Score: 35.16  E-value: 1.07e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 972623428   5 ILEERCKGCGLCVEFCPkkVLSLSGKrNLQGYKVVyianAEKCNACGICFLMCP 58
Cdd:PRK06991  82 IDEQLCIGCTLCMQACP--VDAIVGA-PKQMHTVL----ADLCTGCDLCVPPCP 128
RnfB COG2878
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and ...
 5-27 1.36e-03

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfB subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 442125 [Multi-domain]  Cd Length: 254  Bit Score: 34.58  E-value: 1.36e-03
                         10        20
                 ....*....|....*....|...
gi 972623428   5 ILEERCKGCGLCVEFCPKKVLSL 27
Cdd:COG2878  164 VDEDKCTGCGLCVEACPVDCIEM 186
Fer COG1141
Ferredoxin [Energy production and conversion];
1-21 1.98e-03

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 32.55  E-value: 1.98e-03
                        10        20
                ....*....|....*....|.
gi 972623428  1 MKIKILEERCKGCGLCVEFCP 21
Cdd:COG1141   1 MKVTVDRDTCIGCGLCVALAP 21
PRK13795 PRK13795
hypothetical protein; Provisional
 2-21 3.32e-03

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 33.81  E-value: 3.32e-03
                         10        20
                 ....*....|....*....|
gi 972623428   2 KIKILEERCKGCGLCVEFCP 21
Cdd:PRK13795 606 KISVDEEKCIHCGKCTEVCP 625
NapF_like cd10564
NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, ...
 8-62 4.37e-03

NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319886 [Multi-domain]  Cd Length: 139  Bit Score: 32.99  E-value: 4.37e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 972623428   8 ERCKGCGLCVEFCPKKVLslsgKRNLQGYKVVYIANAEkCNACGICFLMCPEVVF 62
Cdd:cd10564   13 DLCTRCGDCVEACPEGII----VRGDGGFPELDFSRGE-CTFCGACAEACPEGAL 62
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 2-27 5.98e-03

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 31.95  E-value: 5.98e-03
                        10        20
                ....*....|....*....|....*.
gi 972623428  2 KIKILEERCKGCGLCVEFCPKKVLSL 27
Cdd:COG1144  54 YYGIDYDYCKGCGICAEVCPVKAIEM 79
porD PRK09625
pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
 10-27 7.34e-03

pyruvate flavodoxin oxidoreductase subunit delta; Reviewed


Pssm-ID: 236596 [Multi-domain]  Cd Length: 133  Bit Score: 32.41  E-value: 7.34e-03
                         10
                 ....*....|....*...
gi 972623428  10 CKGCGLCVEFCPKKVLSL 27
Cdd:PRK09625  91 CKGCGVCVEVCPTNPKSL 108
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
7-59 8.30e-03

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 32.55  E-value: 8.30e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 972623428   7 EERCKGCGLCVEFCPKKVLSLSGKRNLQG--YKVVYIANAEKCNACGICFLMCPE 59
Cdd:PRK05888  57 EERCIACKLCAAICPADAITIEAAEREDGrrRTTRYDINFGRCIFCGFCEEACPT 111
PRK06273 PRK06273
ferredoxin; Provisional
 4-68 8.53e-03

ferredoxin; Provisional


Pssm-ID: 235764 [Multi-domain]  Cd Length: 165  Bit Score: 32.37  E-value: 8.53e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972623428   4 KILEERCKGCGLCVEFCPKKVL---SLSGKRNLQGYKVVYIA--NAEKCNACGICFLMCPEVVFVEEDSP 68
Cdd:PRK06273  45 KVFEELCIGCGGCANVCPTKAIemiPVEPVKITEGYVKTKIPkiDYEKCVYCLYCHDFCPVFALFNEISP 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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