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Conserved domains on  [gi|972322226|ref|WP_058979232|]
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MULTISPECIES: phage tail protein [Deinococcus]

Protein Classification

phage tail protein( domain architecture ID 10536308)

phage tail protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_T4_gp19 pfam06841
T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 ...
 11-146 6.70e-52

T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.


:

Pssm-ID: 429149  Cd Length: 134  Bit Score: 161.26  E-value: 6.70e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972322226   11 VAAYFSVQFDNKVVGAFRECTGLGSESQVVEYRATDEKGRAvlIREPGTMKYNDIVLKRGITNDMDMWGWRQQVEEGKMD 90
Cdd:pfam06841   1 PAFRFQVEIDGEVDAAFQEVSGLKIETEVVEYREGGENRFV--RKLPGRTKYGNLTLKRGLTDDSELWDWFNKVINGGIK 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 972322226   91 EARRSGTITLHNQKGEPVAAWTFERAWPSKLNGPTYDAKSNEVAIEELTITHEGYK 146
Cdd:pfam06841  79 AARKDISISLLNEDGNPVARWKLINAWPVKWTGPDLDASSNEVAIETLELAHEGFE 134
 
Name Accession Description Interval E-value
Phage_T4_gp19 pfam06841
T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 ...
 11-146 6.70e-52

T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.


Pssm-ID: 429149  Cd Length: 134  Bit Score: 161.26  E-value: 6.70e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972322226   11 VAAYFSVQFDNKVVGAFRECTGLGSESQVVEYRATDEKGRAvlIREPGTMKYNDIVLKRGITNDMDMWGWRQQVEEGKMD 90
Cdd:pfam06841   1 PAFRFQVEIDGEVDAAFQEVSGLKIETEVVEYREGGENRFV--RKLPGRTKYGNLTLKRGLTDDSELWDWFNKVINGGIK 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 972322226   91 EARRSGTITLHNQKGEPVAAWTFERAWPSKLNGPTYDAKSNEVAIEELTITHEGYK 146
Cdd:pfam06841  79 AARKDISISLLNEDGNPVARWKLINAWPVKWTGPDLDASSNEVAIETLELAHEGFE 134
TIGR02241 TIGR02241
conserved hypothetical phage tail region protein; This family consists of uncharacterized ...
 7-148 8.59e-47

conserved hypothetical phage tail region protein; This family consists of uncharacterized proteins. All members so far represent bacterial genes found in apparent phage or otherwisely laterally transferred regions of the chromosome. Tentatively identified neighboring proteins tend to be phage tail region proteins. In some species, including Photorhabdus luminescens TTO1, several members of this family may be encoded near each other.


Pssm-ID: 274049  Cd Length: 140  Bit Score: 148.68  E-value: 8.59e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972322226    7 KDPLVAAYFSVQFDNKVVGAFRECTGLGSESQVVEYRATDEKGRAVLIrePGTMKYNDIVLKRGITNDMDMWGWRQQVEE 86
Cdd:TIGR02241   1 EDPLVSFRFYVEIDGETVAGFSSVSGLQITMDVIEYREGGGNENERKL--PGRTKYGPVTLKRGVTNDSDLWQWANDSML 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 972322226   87 GKMDEARRSGTITLHNQKGEPVAAWTFERAWPSKLNGPTYDAKSNEVAIEELTITHEGYKRV 148
Cdd:TIGR02241  79 NDMGTRRKNASIRLYNEAGEPLMRWEVINAWPTKYGAPDLDANSNQVAVESIELVHEGLKRQ 140
 
Name Accession Description Interval E-value
Phage_T4_gp19 pfam06841
T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 ...
 11-146 6.70e-52

T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.


Pssm-ID: 429149  Cd Length: 134  Bit Score: 161.26  E-value: 6.70e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972322226   11 VAAYFSVQFDNKVVGAFRECTGLGSESQVVEYRATDEKGRAvlIREPGTMKYNDIVLKRGITNDMDMWGWRQQVEEGKMD 90
Cdd:pfam06841   1 PAFRFQVEIDGEVDAAFQEVSGLKIETEVVEYREGGENRFV--RKLPGRTKYGNLTLKRGLTDDSELWDWFNKVINGGIK 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 972322226   91 EARRSGTITLHNQKGEPVAAWTFERAWPSKLNGPTYDAKSNEVAIEELTITHEGYK 146
Cdd:pfam06841  79 AARKDISISLLNEDGNPVARWKLINAWPVKWTGPDLDASSNEVAIETLELAHEGFE 134
TIGR02241 TIGR02241
conserved hypothetical phage tail region protein; This family consists of uncharacterized ...
 7-148 8.59e-47

conserved hypothetical phage tail region protein; This family consists of uncharacterized proteins. All members so far represent bacterial genes found in apparent phage or otherwisely laterally transferred regions of the chromosome. Tentatively identified neighboring proteins tend to be phage tail region proteins. In some species, including Photorhabdus luminescens TTO1, several members of this family may be encoded near each other.


Pssm-ID: 274049  Cd Length: 140  Bit Score: 148.68  E-value: 8.59e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972322226    7 KDPLVAAYFSVQFDNKVVGAFRECTGLGSESQVVEYRATDEKGRAVLIrePGTMKYNDIVLKRGITNDMDMWGWRQQVEE 86
Cdd:TIGR02241   1 EDPLVSFRFYVEIDGETVAGFSSVSGLQITMDVIEYREGGGNENERKL--PGRTKYGPVTLKRGVTNDSDLWQWANDSML 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 972322226   87 GKMDEARRSGTITLHNQKGEPVAAWTFERAWPSKLNGPTYDAKSNEVAIEELTITHEGYKRV 148
Cdd:TIGR02241  79 NDMGTRRKNASIRLYNEAGEPLMRWEVINAWPTKYGAPDLDANSNQVAVESIELVHEGLKRQ 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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