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Conserved domains on  [gi|971762072|ref|YP_009215284|]
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GTP-binding domain [Gordonia phage Gmala1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YAcAr super family cl15723
YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA ...
 6-75 8.13e-10

YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA families and shows associations with NAD utilization and ADP-ribosylation domains including NUDIX, NADAR and MACRO. Members of this family are predicted to function as sensors of nucleotide, nucleotide-derived ligands, or nucleic acids, which are potentially processed/modified by associating effectors. Also associates in a distinct system with a phosphoribosyltransferase (PRTase) domain.


The actual alignment was detected with superfamily member pfam10686:

Pssm-ID: 431435 [Multi-domain]  Cd Length: 66  Bit Score: 51.77  E-value: 8.13e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 971762072    6 KILVTGSRYWDDYQMVQDLICDVLSDFewysKECELIHGGAPGADEMAARfcsgYFDM---TVTEFPADWGKH 75
Cdd:pfam10686   2 RVLVTGGRDFNDHELIWAALDKVRARH----PDMVLVHGGAKGADRIAAR----WARErgvPQVRFPPDWKRH 66
 
Name Accession Description Interval E-value
YAcAr pfam10686
YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA ...
 6-75 8.13e-10

YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA families and shows associations with NAD utilization and ADP-ribosylation domains including NUDIX, NADAR and MACRO. Members of this family are predicted to function as sensors of nucleotide, nucleotide-derived ligands, or nucleic acids, which are potentially processed/modified by associating effectors. Also associates in a distinct system with a phosphoribosyltransferase (PRTase) domain.


Pssm-ID: 431435 [Multi-domain]  Cd Length: 66  Bit Score: 51.77  E-value: 8.13e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 971762072    6 KILVTGSRYWDDYQMVQDLICDVLSDFewysKECELIHGGAPGADEMAARfcsgYFDM---TVTEFPADWGKH 75
Cdd:pfam10686   2 RVLVTGGRDFNDHELIWAALDKVRARH----PDMVLVHGGAKGADRIAAR----WARErgvPQVRFPPDWKRH 66
 
Name Accession Description Interval E-value
YAcAr pfam10686
YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA ...
 6-75 8.13e-10

YspA, cpYpsA-related SLOG family; Family in the SLOG superfamily, related to YspA and cpYpsA families and shows associations with NAD utilization and ADP-ribosylation domains including NUDIX, NADAR and MACRO. Members of this family are predicted to function as sensors of nucleotide, nucleotide-derived ligands, or nucleic acids, which are potentially processed/modified by associating effectors. Also associates in a distinct system with a phosphoribosyltransferase (PRTase) domain.


Pssm-ID: 431435 [Multi-domain]  Cd Length: 66  Bit Score: 51.77  E-value: 8.13e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 971762072    6 KILVTGSRYWDDYQMVQDLICDVLSDFewysKECELIHGGAPGADEMAARfcsgYFDM---TVTEFPADWGKH 75
Cdd:pfam10686   2 RVLVTGGRDFNDHELIWAALDKVRARH----PDMVLVHGGAKGADRIAAR----WARErgvPQVRFPPDWKRH 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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