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Conserved domains on  [gi|970949440|ref|NP_001305114|]
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integrin alpha-D isoform 1 precursor [Homo sapiens]

Protein Classification

integrin alpha( domain architecture ID 11546373)

integrin alpha forms a heterodimer with integrin beta to mediate cell-extracellular matrix and cell-cell interactions; integrin alpha is a component of integrin, a cell adhesion molecule that mediates cell-extracellular matrix and cell-cell interactions

Gene Ontology:  GO:0007155|GO:0008305|GO:0005178|GO:0046872
PubMed:  3028640|2199285|12297042|12826403|14689578|12361595|12234368

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
 149-324 7.36e-92

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


:

Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 291.95  E-value: 7.36e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  149 MDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFEG--TDTLFALMQYSNLLKIHFTFTQFRTSPSQQSLVDPIVQLKGLTF 226
Cdd:cd01469     1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIgpTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  227 TATGILTVVTQLFHHKNGARKSAKKILIVITDGQKYKDPLEySDVIPQAEKAGIIRYAIGVGHAFQGPTARQELNTISSA 306
Cdd:cd01469    81 TATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLL-KDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASK 159

                         170
                  ....*....|....*...
gi 970949440  307 PPQDHVFKVDNFAALGSI 324
Cdd:cd01469   160 PPEEHFFNVTDFAALKDI 177
Integrin_alpha2 super family cl26747
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 617-958 5.46e-23

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


The actual alignment was detected with superfamily member pfam08441:

Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 103.55  E-value: 5.46e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   617 PVLKVGVAMRFSPVEVAKAVYRCwEEKPSALEAGDATVCLTIQKSSLDQLGDIqssVRFDLALDPGR---LTSRAIFNET 693
Cdd:pfam08441    2 PVVSVSASLQVEPNSINPEKKNC-TLTGTPVSCFTVRACFSYTGKPIPNPSLV---LNYELELDRQKkkgLPPRVLFLDS 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   694 KNPTLTRRKTLGLG--IHCETLKLLLPDCVEDVVSPIILHLNFSLVREPIPSP--QNLRPVLAVGSQDLFTASLPFEKNC 769
Cdd:pfam08441   78 QQPSLTGTLVLLSQgrKVCRTTKAYLRDEFRDKLSPIVISLNYSLRVDPRAPSdlPGLKPILDQNQPSTVQEQANFLKDC 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   770 GQDGLCEGDLGVTLSFSGLQ---TLTVGSSLELNVIVTVWNAGEDSYGTVVSLYYPAGLSHRRVSGAQKQPhqsalRLAC 846
Cdd:pfam08441  158 GEDNVCVPDLQLSAKFDSREsdePLLLGDDNDLALEITVTNLGEDAYEAELYVTLPPGLDYSGVRREGSEK-----QLSC 232

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   847 EtvPTEDEGLRSSRCSVNHPiFHEGSNGTFIVTFDVSyKATLGDRML---MRASASSENNKASSskaTFQLELPVKYAVY 923
Cdd:pfam08441  233 T--AKKENSTRQVVCDLGNP-MKRGTQVTFGLRFSVS-GLELSTEELsfdLQIRSTNEQNSNSN---PVSLKVPVVAEAQ 305

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....
gi 970949440   924 TMI---SRQEESTKYFNFATSDEKKMKEAE------HRYRVNNL 958
Cdd:pfam08441  306 LSLsgvSKPDQVVGGSVKGESAMKPRSEEDigplveHTYEVINN 349
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 453-495 1.66e-09

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 54.69  E-value: 1.66e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 970949440    453 IGSYFGASLCSV-DVDSDGSTDLiLIGAPHYYEQTRGGQVSVCP 495
Cdd:smart00191    1 PGSYFGYSVAGVgDVNGDGYPDL-LVGAPRANDAGETGAVYVYF 43
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 517-572 7.63e-09

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 52.76  E-value: 7.63e-09
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 970949440    517 PWGRFGAALTVLGDVNEDKLIDVAIGAPGEQENR--GAVYLFHGaSESGISPSHSQRI 572
Cdd:smart00191    1 PGSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGetGAVYVYFG-SSGGGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 582-614 1.05e-03

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 38.13  E-value: 1.05e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 970949440    582 QYFGQALSGGQDLTQDGLMDLAVGA--------RGQVLLLR 614
Cdd:smart00191    3 SYFGYSVAGVGDVNGDGYPDLLVGAprandageTGAVYVYF 43
Integrin_alpha pfam00357
Integrin alpha cytoplasmic region; This family contains the short intracellular region of ...
 1125-1139 2.12e-03

Integrin alpha cytoplasmic region; This family contains the short intracellular region of integrin alpha chains.


:

Pssm-ID: 459778  Cd Length: 15  Bit Score: 36.32  E-value: 2.12e-03
                           10
                   ....*....|....*
gi 970949440  1125 KLGFFKRHYKEMLED 1139
Cdd:pfam00357    1 KCGFFKRNYPPQEEE 15
 
Name Accession Description Interval E-value
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
 149-324 7.36e-92

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 291.95  E-value: 7.36e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  149 MDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFEG--TDTLFALMQYSNLLKIHFTFTQFRTSPSQQSLVDPIVQLKGLTF 226
Cdd:cd01469     1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIgpTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  227 TATGILTVVTQLFHHKNGARKSAKKILIVITDGQKYKDPLEySDVIPQAEKAGIIRYAIGVGHAFQGPTARQELNTISSA 306
Cdd:cd01469    81 TATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLL-KDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASK 159

                         170
                  ....*....|....*...
gi 970949440  307 PPQDHVFKVDNFAALGSI 324
Cdd:cd01469   160 PPEEHFFNVTDFAALKDI 177
VWA pfam00092
von Willebrand factor type A domain;
150-327 4.05e-48

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 168.99  E-value: 4.05e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   150 DIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFE--GTDTLFALMQYSNLLKIHFTFTQFRTSPSQQSLVDPI-VQLKGLTF 226
Cdd:pfam00092    1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDigPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLrYLGGGTTN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   227 TATGILTVVTQLFHHKNGARKSAKKILIVITDGQKYKDplEYSDVIPQAEKAGIIRYAIGVGHAFqgptaRQELNTISSA 306
Cdd:pfam00092   81 TGKALKYALENLFSSAAGARPGAPKVVVLLTDGRSQDG--DPEEVARELKSAGVTVFAVGVGNAD-----DEELRKIASE 153

                          170       180
                   ....*....|....*....|.
gi 970949440   307 PPQDHVFKVDNFAALGSIQKQ 327
Cdd:pfam00092  154 PGEGHVFTVSDFEALEDLQDQ 174
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 150-325 1.39e-37

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 139.13  E-value: 1.39e-37
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440    150 DIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFE--GTDTLFALMQYSNLLKIHFTFTQFRTSPSQQSLVDPI-VQLKGLTF 226
Cdd:smart00327    1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDigPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLsYKLGGGTN 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440    227 TATGILTVVTQLFHHKNGARKSAKKILIVITDGQKYKDPLEYSDVIPQAEKAGIIRYAIGVGHAFqgptARQELNTISSA 306
Cdd:smart00327   81 LGAALQYALENLFSKSAGSRRGAPKVVILITDGESNDGPKDLLKAAKELKRSGVKVFVVGVGNDV----DEEELKKLASA 156

                           170
                    ....*....|....*....
gi 970949440    307 PPQDHVFKVDNFAALGSIQ 325
Cdd:smart00327  157 PGGVYVFLPELLDLLIDLL 175
Integrin_alpha2 pfam08441
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 617-958 5.46e-23

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 103.55  E-value: 5.46e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   617 PVLKVGVAMRFSPVEVAKAVYRCwEEKPSALEAGDATVCLTIQKSSLDQLGDIqssVRFDLALDPGR---LTSRAIFNET 693
Cdd:pfam08441    2 PVVSVSASLQVEPNSINPEKKNC-TLTGTPVSCFTVRACFSYTGKPIPNPSLV---LNYELELDRQKkkgLPPRVLFLDS 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   694 KNPTLTRRKTLGLG--IHCETLKLLLPDCVEDVVSPIILHLNFSLVREPIPSP--QNLRPVLAVGSQDLFTASLPFEKNC 769
Cdd:pfam08441   78 QQPSLTGTLVLLSQgrKVCRTTKAYLRDEFRDKLSPIVISLNYSLRVDPRAPSdlPGLKPILDQNQPSTVQEQANFLKDC 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   770 GQDGLCEGDLGVTLSFSGLQ---TLTVGSSLELNVIVTVWNAGEDSYGTVVSLYYPAGLSHRRVSGAQKQPhqsalRLAC 846
Cdd:pfam08441  158 GEDNVCVPDLQLSAKFDSREsdePLLLGDDNDLALEITVTNLGEDAYEAELYVTLPPGLDYSGVRREGSEK-----QLSC 232

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   847 EtvPTEDEGLRSSRCSVNHPiFHEGSNGTFIVTFDVSyKATLGDRML---MRASASSENNKASSskaTFQLELPVKYAVY 923
Cdd:pfam08441  233 T--AKKENSTRQVVCDLGNP-MKRGTQVTFGLRFSVS-GLELSTEELsfdLQIRSTNEQNSNSN---PVSLKVPVVAEAQ 305

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....
gi 970949440   924 TMI---SRQEESTKYFNFATSDEKKMKEAE------HRYRVNNL 958
Cdd:pfam08441  306 LSLsgvSKPDQVVGGSVKGESAMKPRSEEDigplveHTYEVINN 349
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 453-495 1.66e-09

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 54.69  E-value: 1.66e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 970949440    453 IGSYFGASLCSV-DVDSDGSTDLiLIGAPHYYEQTRGGQVSVCP 495
Cdd:smart00191    1 PGSYFGYSVAGVgDVNGDGYPDL-LVGAPRANDAGETGAVYVYF 43
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 517-572 7.63e-09

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 52.76  E-value: 7.63e-09
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 970949440    517 PWGRFGAALTVLGDVNEDKLIDVAIGAPGEQENR--GAVYLFHGaSESGISPSHSQRI 572
Cdd:smart00191    1 PGSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGetGAVYVYFG-SSGGGNSIPLQNL 57
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 125-328 1.06e-08

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 57.64  E-value: 1.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  125 LLLGSRWEIIQTVPDATPECPHQEMDIVFLIDGSGSIDQND-FNQMKGFVQAVMGQFEGTDTLfALMQYSnllkiHFTFT 203
Cdd:COG1240    69 LLAVLLLLLALALAPLALARPQRGRDVVLVVDASGSMAAENrLEAAKGALLDFLDDYRPRDRV-GLVAFG-----GEAEV 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  204 QFRTSPSQQSLVDPIVQLK--GLTFTATGILTVVTQLfhhkNGARKSAKKILIVITDGQKYKDPLEYSDVIPQAEKAGII 281
Cdd:COG1240   143 LLPLTRDREALKRALDELPpgGGTPLGDALALALELL----KRADPARRKVIVLLTDGRDNAGRIDPLEAAELAAAAGIR 218

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 970949440  282 RYAIGVGHAFQGPTARQELNTISSAppqdHVFKVDNFAALGSIQKQL 328
Cdd:COG1240   219 IYTIGVGTEAVDEGLLREIAEATGG----RYFRADDLSELAAIYREI 261
acidobact_VWFA TIGR03436
VWFA-related Acidobacterial domain; Members of this family are bacterial domains that include ...
 151-286 5.52e-05

VWFA-related Acidobacterial domain; Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.


Pssm-ID: 274577 [Multi-domain]  Cd Length: 296  Bit Score: 46.53  E-value: 5.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   151 IVFLIDGSGSI--DQNDF-NQMKGFVQAVMGqfegTDTLFALMQYSNLLKIHFTFT-----------QFRT-SPSQQSLV 215
Cdd:TIGR03436   56 VGLVIDTSGSMrnDLDRArAAAIRFLKTVLR----PNDRVFVVTFNTRLRLLQDFTsdprlleaalnRLKPpLRTDYNSS 131

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 970949440   216 DPIVQLKGLTFTATGILTVVTQLFHHKNGArKSAKKILIVITDGQKYKDPLEYSDVIPQAEKAGIIRYAIG 286
Cdd:TIGR03436  132 GAFVRDGGGTALYDAITLAALEQLANALAG-IPGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSID 201
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 457-493 5.54e-05

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 41.34  E-value: 5.54e-05
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 970949440   457 FGASLCSVDVDSDGSTDLIlIGAPHYYEQtRGGQVSV 493
Cdd:pfam01839    1 FGYSVAVGDLNGDGYADLA-VGAPGEGGA-GAGAVYV 35
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 521-556 2.89e-04

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 39.42  E-value: 2.89e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 970949440   521 FGAALTVlGDVNEDKLIDVAIGAPGE-QENRGAVYLF 556
Cdd:pfam01839    1 FGYSVAV-GDLNGDGYADLAVGAPGEgGAGAGAVYVL 36
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 582-614 1.05e-03

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 38.13  E-value: 1.05e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 970949440    582 QYFGQALSGGQDLTQDGLMDLAVGA--------RGQVLLLR 614
Cdd:smart00191    3 SYFGYSVAGVGDVNGDGYPDLLVGAprandageTGAVYVYF 43
Integrin_alpha pfam00357
Integrin alpha cytoplasmic region; This family contains the short intracellular region of ...
 1125-1139 2.12e-03

Integrin alpha cytoplasmic region; This family contains the short intracellular region of integrin alpha chains.


Pssm-ID: 459778  Cd Length: 15  Bit Score: 36.32  E-value: 2.12e-03
                           10
                   ....*....|....*
gi 970949440  1125 KLGFFKRHYKEMLED 1139
Cdd:pfam00357    1 KCGFFKRNYPPQEEE 15
 
Name Accession Description Interval E-value
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
 149-324 7.36e-92

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 291.95  E-value: 7.36e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  149 MDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFEG--TDTLFALMQYSNLLKIHFTFTQFRTSPSQQSLVDPIVQLKGLTF 226
Cdd:cd01469     1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIgpTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  227 TATGILTVVTQLFHHKNGARKSAKKILIVITDGQKYKDPLEySDVIPQAEKAGIIRYAIGVGHAFQGPTARQELNTISSA 306
Cdd:cd01469    81 TATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLL-KDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASK 159

                         170
                  ....*....|....*...
gi 970949440  307 PPQDHVFKVDNFAALGSI 324
Cdd:cd01469   160 PPEEHFFNVTDFAALKDI 177
VWA pfam00092
von Willebrand factor type A domain;
150-327 4.05e-48

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 168.99  E-value: 4.05e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   150 DIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFE--GTDTLFALMQYSNLLKIHFTFTQFRTSPSQQSLVDPI-VQLKGLTF 226
Cdd:pfam00092    1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDigPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLrYLGGGTTN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   227 TATGILTVVTQLFHHKNGARKSAKKILIVITDGQKYKDplEYSDVIPQAEKAGIIRYAIGVGHAFqgptaRQELNTISSA 306
Cdd:pfam00092   81 TGKALKYALENLFSSAAGARPGAPKVVVLLTDGRSQDG--DPEEVARELKSAGVTVFAVGVGNAD-----DEELRKIASE 153

                          170       180
                   ....*....|....*....|.
gi 970949440   307 PPQDHVFKVDNFAALGSIQKQ 327
Cdd:pfam00092  154 PGEGHVFTVSDFEALEDLQDQ 174
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 150-325 1.39e-37

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 139.13  E-value: 1.39e-37
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440    150 DIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFE--GTDTLFALMQYSNLLKIHFTFTQFRTSPSQQSLVDPI-VQLKGLTF 226
Cdd:smart00327    1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDigPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLsYKLGGGTN 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440    227 TATGILTVVTQLFHHKNGARKSAKKILIVITDGQKYKDPLEYSDVIPQAEKAGIIRYAIGVGHAFqgptARQELNTISSA 306
Cdd:smart00327   81 LGAALQYALENLFSKSAGSRRGAPKVVILITDGESNDGPKDLLKAAKELKRSGVKVFVVGVGNDV----DEEELKKLASA 156

                           170
                    ....*....|....*....
gi 970949440    307 PPQDHVFKVDNFAALGSIQ 325
Cdd:smart00327  157 PGGVYVFLPELLDLLIDLL 175
vWFA_subfamily_ECM cd01450
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 149-313 3.87e-31

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains


Pssm-ID: 238727 [Multi-domain]  Cd Length: 161  Bit Score: 120.09  E-value: 3.87e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  149 MDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFE--GTDTLFALMQYSNLLKIHFTFTQFRTSPSQQSLVDPIVQLKGL-T 225
Cdd:cd01450     1 LDIVFLLDGSESVGPENFEKVKDFIEKLVEKLDigPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLKYLGGGgT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  226 FTATGILTVVTQLFHHKNgARKSAKKILIVITDGQKYKDPLEySDVIPQAEKAGIIRYAIGVGHAFQgptarQELNTISS 305
Cdd:cd01450    81 NTGKALQYALEQLFSESN-ARENVPKVIIVLTDGRSDDGGDP-KEAAAKLKDEGIKVFVVGVGPADE-----EELREIAS 153


                  ....*...
gi 970949440  306 APPQDHVF 313
Cdd:cd01450   154 CPSERHVF 161
vWA_collagen_alphaI-XII-like cd01482
Collagen: The extracellular matrix represents a complex alloy of variable members of diverse ...
 150-318 2.42e-28

Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238759 [Multi-domain]  Cd Length: 164  Bit Score: 111.99  E-value: 2.42e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  150 DIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFE-GTD-TLFALMQYSNLLKIHFTFTQFrtsPSQQSLVDPIVQLK---GL 224
Cdd:cd01482     2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEiGPDgVQVGLVQYSDDPRTEFDLNAY---TSKEDVLAAIKNLPykgGN 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  225 TFTATGILTVVTQLFHHKNGARKSAKKILIVITDGQKYKDPLEYSDVipqAEKAGIIRYAIGVGHAfqgptARQELNTIS 304
Cdd:cd01482    79 TRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDVELPARV---LRNLGVNVFAVGVKDA-----DESELKMIA 150

                         170
                  ....*....|....
gi 970949440  305 SAPPQDHVFKVDNF 318
Cdd:cd01482   151 SKPSETHVFNVADF 164
vWA_collagen cd01472
von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This ...
 150-318 3.66e-27

von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.


Pssm-ID: 238749 [Multi-domain]  Cd Length: 164  Bit Score: 108.85  E-value: 3.66e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  150 DIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFE-GTD-TLFALMQYSNLLKIHFTFTQFRTspsQQSLVDPIVQLK---GL 224
Cdd:cd01472     2 DIVFLVDGSESIGLSNFNLVKDFVKRVVERLDiGPDgVRVGVVQYSDDPRTEFYLNTYRS---KDDVLEAVKNLRyigGG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  225 TFTATGILTVVTQLFHHKNGARKSAKKILIVITDGQKYKDPLEYSDVIPQaekAGIIRYAIGVGHAfqgptARQELNTIS 304
Cdd:cd01472    79 TNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDVEEPAVELKQ---AGIEVFAVGVKNA-----DEEELKQIA 150

                         170
                  ....*....|....
gi 970949440  305 SAPPQDHVFKVDNF 318
Cdd:cd01472   151 SDPKELYVFNVADF 164
vWFA cd00198
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 150-313 7.62e-26

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


Pssm-ID: 238119 [Multi-domain]  Cd Length: 161  Bit Score: 104.96  E-value: 7.62e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  150 DIVFLIDGSGSIDQNDFNQMKGFVQAVMGQF--EGTDTLFALMQYSNLLKIHFTFTQFRTSPSQQSLVDPIV-QLKGLTF 226
Cdd:cd00198     2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSLsaSPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKkGLGGGTN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  227 TATGILTVVTQLfhhKNGARKSAKKILIVITDGQKYKDPLEYSDVIPQAEKAGIIRYAIGVGhafqGPTARQELNTISSA 306
Cdd:cd00198    82 IGAALRLALELL---KSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIG----DDANEDELKEIADK 154


                  ....*..
gi 970949440  307 PPQDHVF 313
Cdd:cd00198   155 TTGGAVF 161
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 150-336 9.73e-24

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 100.92  E-value: 9.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  150 DIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFE-GTD-TLFALMQYSNLLKIHFTFTQFRTSPSQQSLVDPIVQLKGLTFT 227
Cdd:cd01475     4 DLVFLIDSSRSVRPENFELVKQFLNQIIDSLDvGPDaTRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETGTMT 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  228 ATGILTVVTQLFHHKNGARKSAK---KILIVITDGQKyKDPLeySDVIPQAEKAGIIRYAIGVGHAFQGptarqELNTIS 304
Cdd:cd01475    84 GLAIQYAMNNAFSEAEGARPGSErvpRVGIVVTDGRP-QDDV--SEVAAKARALGIEMFAVGVGRADEE-----ELREIA 155

                         170       180       190
                  ....*....|....*....|....*....|..
gi 970949440  305 SAPPQDHVFKVDNFAALGSIQKQLQEKIYAVE 336
Cdd:cd01475   156 SEPLADHVFYVEDFSTIEELTKKFQGKICVVP 187
Integrin_alpha2 pfam08441
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 617-958 5.46e-23

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 103.55  E-value: 5.46e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   617 PVLKVGVAMRFSPVEVAKAVYRCwEEKPSALEAGDATVCLTIQKSSLDQLGDIqssVRFDLALDPGR---LTSRAIFNET 693
Cdd:pfam08441    2 PVVSVSASLQVEPNSINPEKKNC-TLTGTPVSCFTVRACFSYTGKPIPNPSLV---LNYELELDRQKkkgLPPRVLFLDS 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   694 KNPTLTRRKTLGLG--IHCETLKLLLPDCVEDVVSPIILHLNFSLVREPIPSP--QNLRPVLAVGSQDLFTASLPFEKNC 769
Cdd:pfam08441   78 QQPSLTGTLVLLSQgrKVCRTTKAYLRDEFRDKLSPIVISLNYSLRVDPRAPSdlPGLKPILDQNQPSTVQEQANFLKDC 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   770 GQDGLCEGDLGVTLSFSGLQ---TLTVGSSLELNVIVTVWNAGEDSYGTVVSLYYPAGLSHRRVSGAQKQPhqsalRLAC 846
Cdd:pfam08441  158 GEDNVCVPDLQLSAKFDSREsdePLLLGDDNDLALEITVTNLGEDAYEAELYVTLPPGLDYSGVRREGSEK-----QLSC 232

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   847 EtvPTEDEGLRSSRCSVNHPiFHEGSNGTFIVTFDVSyKATLGDRML---MRASASSENNKASSskaTFQLELPVKYAVY 923
Cdd:pfam08441  233 T--AKKENSTRQVVCDLGNP-MKRGTQVTFGLRFSVS-GLELSTEELsfdLQIRSTNEQNSNSN---PVSLKVPVVAEAQ 305

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....
gi 970949440   924 TMI---SRQEESTKYFNFATSDEKKMKEAE------HRYRVNNL 958
Cdd:pfam08441  306 LSLsgvSKPDQVVGGSVKGESAMKPRSEEDigplveHTYEVINN 349
VWA_integrin_invertebrates cd01476
VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have ...
 150-313 2.95e-17

VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.


Pssm-ID: 238753 [Multi-domain]  Cd Length: 163  Bit Score: 80.14  E-value: 2.95e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  150 DIVFLIDGSGSIDQNdFNQMKGFVQAVMGQFE--GTDTLFALMQYSNLLK--IHFTFTQFRTSPSQQSLVDPIVQLKGLT 225
Cdd:cd01476     2 DLLFVLDSSGSVRGK-FEKYKKYIERIVEGLEigPTATRVALITYSGRGRqrVRFNLPKHNDGEELLEKVDNLRFIGGTT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  226 FTATGIlTVVTQLFHHKNGARKSAKKILIVITDGQKYKDPLEYSDVIpqAEKAGIIRYAIGVGhaFQGPTARQELNTISS 305
Cdd:cd01476    81 ATGAAI-EVALQQLDPSEGRREGIPKVVVVLTDGRSHDDPEKQARIL--RAVPNIETFAVGTG--DPGTVDTEELHSITG 155


                  ....*...
gi 970949440  306 APpqDHVF 313
Cdd:cd01476   156 NE--DHIF 161
vWA_ATR cd01474
ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, ...
 150-324 5.81e-13

ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.


Pssm-ID: 238751 [Multi-domain]  Cd Length: 185  Bit Score: 68.69  E-value: 5.81e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  150 DIVFLIDGSGSIDQNdFNQMKGFVQAVMGQFEGTDTLFALMQYSNLLKIHFTFTQFRTSPSQQSLVDPIVQLKGLTFTAT 229
Cdd:cd01474     6 DLYFVLDKSGSVAAN-WIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTDDSSAIIKGLEVLKKVTPSGQTYIHE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  230 GILTVVTQLFHHKNGARKSAkKILIVITDGQKYKDPLEYSD-VIPQAEKAGIIRYAIGVGHAFQgptarQELNTISSAPp 308
Cdd:cd01474    85 GLENANEQIFNRNGGGRETV-SVIIALTDGQLLLNGHKYPEhEAKLSRKLGAIVYCVGVTDFLK-----SQLINIADSK- 157

                         170
                  ....*....|....*..
gi 970949440  309 qDHVFKVDN-FAALGSI 324
Cdd:cd01474   158 -EYVFPVTSgFQALSGI 173
vWA_collagen_alpha3-VI-like cd01481
VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable ...
 150-318 1.05e-12

VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238758  Cd Length: 165  Bit Score: 67.35  E-value: 1.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  150 DIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFE-GTDTL-FALMQYSNLLKIHFTftqFRTSPSQQSLVDPI--VQLKGLT 225
Cdd:cd01481     2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDvGPDKIrVAVVQFSDTPRPEFY---LNTHSTKADVLGAVrrLRLRGGS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  226 FTATG--ILTVVTQLFHHKNGAR--KSAKKILIVITDGQKYKDPLEYSDVIPQaekAGIIRYAIGVGHAfqgptARQELN 301
Cdd:cd01481    79 QLNTGsaLDYVVKNLFTKSAGSRieEGVPQFLVLITGGKSQDDVERPAVALKR---AGIVPFAIGARNA-----DLAELQ 150

                         170
                  ....*....|....*..
gi 970949440  302 TISSAPpqDHVFKVDNF 318
Cdd:cd01481   151 QIAFDP--SFVFQVSDF 165
vWA_collagen_alpha_1-VI-type cd01480
VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable ...
 144-321 1.31e-10

VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238757 [Multi-domain]  Cd Length: 186  Bit Score: 61.63  E-value: 1.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  144 CPhqeMDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQF--------EGTDTLFALMQYSNLLKIHFTFTQFRTSPSQ-QSL 214
Cdd:cd01480     1 GP---VDITFVLDSSESVGLQNFDITKNFVKRVAERFlkdyyrkdPAGSWRVGVVQYSDQQEVEAGFLRDIRNYTSlKEA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  215 VDPIVQLKGLTFTATGILTVVTQLFHHkngARKSAKKILIVITDGQKYKDP---LEysDVIPQAEKAGIIRYAIGVghaf 291
Cdd:cd01480    78 VDNLEYIGGGTFTDCALKYATEQLLEG---SHQKENKFLLVITDGHSDGSPdggIE--KAVNEADHLGIKIFFVAV---- 148

                         170       180       190
                  ....*....|....*....|....*....|
gi 970949440  292 qGPTARQELNTISSAPPQDHVfkVDNFAAL 321
Cdd:cd01480   149 -GSQNEEPLSRIACDGKSALY--RENFAEL 175
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 453-495 1.66e-09

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 54.69  E-value: 1.66e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 970949440    453 IGSYFGASLCSV-DVDSDGSTDLiLIGAPHYYEQTRGGQVSVCP 495
Cdd:smart00191    1 PGSYFGYSVAGVgDVNGDGYPDL-LVGAPRANDAGETGAVYVYF 43
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 517-572 7.63e-09

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 52.76  E-value: 7.63e-09
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 970949440    517 PWGRFGAALTVLGDVNEDKLIDVAIGAPGEQENR--GAVYLFHGaSESGISPSHSQRI 572
Cdd:smart00191    1 PGSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGetGAVYVYFG-SSGGGNSIPLQNL 57
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 125-328 1.06e-08

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 57.64  E-value: 1.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  125 LLLGSRWEIIQTVPDATPECPHQEMDIVFLIDGSGSIDQND-FNQMKGFVQAVMGQFEGTDTLfALMQYSnllkiHFTFT 203
Cdd:COG1240    69 LLAVLLLLLALALAPLALARPQRGRDVVLVVDASGSMAAENrLEAAKGALLDFLDDYRPRDRV-GLVAFG-----GEAEV 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  204 QFRTSPSQQSLVDPIVQLK--GLTFTATGILTVVTQLfhhkNGARKSAKKILIVITDGQKYKDPLEYSDVIPQAEKAGII 281
Cdd:COG1240   143 LLPLTRDREALKRALDELPpgGGTPLGDALALALELL----KRADPARRKVIVLLTDGRDNAGRIDPLEAAELAAAAGIR 218

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 970949440  282 RYAIGVGHAFQGPTARQELNTISSAppqdHVFKVDNFAALGSIQKQL 328
Cdd:COG1240   219 IYTIGVGTEAVDEGLLREIAEATGG----RYFRADDLSELAAIYREI 261
VWA_2 pfam13519
von Willebrand factor type A domain;
151-256 1.74e-08

von Willebrand factor type A domain;


Pssm-ID: 463909 [Multi-domain]  Cd Length: 103  Bit Score: 53.45  E-value: 1.74e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   151 IVFLIDGSGSIDQND-----FNQMKGFVQAVMGQFEGtDTlFALMQYSNLLKIHFTFTQFRTSPsqQSLVDPIVQLKGLT 225
Cdd:pfam13519    1 LVFVLDTSGSMRNGDygptrLEAAKDAVLALLKSLPG-DR-VGLVTFGDGPEVLIPLTKDRAKI--LRALRRLEPKGGGT 76

                           90       100       110
                   ....*....|....*....|....*....|.
gi 970949440   226 FTATGILTVVTQLFHhkngARKSAKKILIVI 256
Cdd:pfam13519   77 NLAAALQLARAALKH----RRKNQPRRIVLI 103
vWA_micronemal_protein cd01471
Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a ...
 149-289 1.67e-06

Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.


Pssm-ID: 238748 [Multi-domain]  Cd Length: 186  Bit Score: 49.69  E-value: 1.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  149 MDIVFLIDGSGSI-DQNDFNQMKGFVQAVMGQFE-GTDTL-FALMQYSNLLKIHFTFTQFRtSPSQQSLVDPIVQLK--- 222
Cdd:cd01471     1 LDLYLLVDGSGSIgYSNWVTHVVPFLHTFVQNLNiSPDEInLYLVTFSTNAKELIRLSSPN-STNKDLALNAIRALLsly 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 970949440  223 ---GLTFTATGILTVVTQLFHHKnGARKSAKKILIVITDGQkykdpleySDVIPQAEKA-------GIIRYAIGVGH 289
Cdd:cd01471    80 ypnGSTNTTSALLVVEKHLFDTR-GNRENAPQLVIIMTDGI--------PDSKFRTLKEarklrerGVIIAVLGVGQ 147
acidobact_VWFA TIGR03436
VWFA-related Acidobacterial domain; Members of this family are bacterial domains that include ...
 151-286 5.52e-05

VWFA-related Acidobacterial domain; Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.


Pssm-ID: 274577 [Multi-domain]  Cd Length: 296  Bit Score: 46.53  E-value: 5.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440   151 IVFLIDGSGSI--DQNDF-NQMKGFVQAVMGqfegTDTLFALMQYSNLLKIHFTFT-----------QFRT-SPSQQSLV 215
Cdd:TIGR03436   56 VGLVIDTSGSMrnDLDRArAAAIRFLKTVLR----PNDRVFVVTFNTRLRLLQDFTsdprlleaalnRLKPpLRTDYNSS 131

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 970949440   216 DPIVQLKGLTFTATGILTVVTQLFHHKNGArKSAKKILIVITDGQKYKDPLEYSDVIPQAEKAGIIRYAIG 286
Cdd:TIGR03436  132 GAFVRDGGGTALYDAITLAALEQLANALAG-IPGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSID 201
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 457-493 5.54e-05

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 41.34  E-value: 5.54e-05
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 970949440   457 FGASLCSVDVDSDGSTDLIlIGAPHYYEQtRGGQVSV 493
Cdd:pfam01839    1 FGYSVAVGDLNGDGYADLA-VGAPGEGGA-GAGAVYV 35
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 521-556 2.89e-04

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 39.42  E-value: 2.89e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 970949440   521 FGAALTVlGDVNEDKLIDVAIGAPGE-QENRGAVYLF 556
Cdd:pfam01839    1 FGYSVAV-GDLNGDGYADLAVGAPGEgGAGAGAVYVL 36
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 582-614 1.05e-03

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 38.13  E-value: 1.05e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 970949440    582 QYFGQALSGGQDLTQDGLMDLAVGA--------RGQVLLLR 614
Cdd:smart00191    3 SYFGYSVAGVGDVNGDGYPDLLVGAprandageTGAVYVYF 43
YfbK COG2304
Secreted protein containing bacterial Ig-like domain and vWFA domain [General function ...
 137-306 1.28e-03

Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only];


Pssm-ID: 441879 [Multi-domain]  Cd Length: 289  Bit Score: 42.01  E-value: 1.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  137 VPDATPECPHQEMDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFEGTDTlFALMQYSNLLKIHFTFTQFRtspSQQSLVD 216
Cdd:COG2304    80 QPPKAAAEERPPLNLVFVIDVSGSMSGDKLELAKEAAKLLVDQLRPGDR-VSIVTFAGDARVLLPPTPAT---DRAKILA 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  217 PIVQLKGLTFTA--TGILTVVTQLfhhKNGARKSAKKILIVITDGQ---KYKDPLEYSDVIPQAEKAGIIRYAIGVGHAF 291
Cdd:COG2304   156 AIDRLQAGGGTAlgAGLELAYELA---RKHFIPGRVNRVILLTDGDanvGITDPEELLKLAEEAREEGITLTTLGVGSDY 232

                         170
                  ....*....|....*
gi 970949440  292 QgptaRQELNTISSA 306
Cdd:COG2304   233 N----EDLLERLADA 243
ViaA COG2425
Uncharacterized conserved protein, contains a von Willebrand factor type A (vWA) domain ...
 148-290 1.29e-03

Uncharacterized conserved protein, contains a von Willebrand factor type A (vWA) domain [Function unknown];


Pssm-ID: 441973 [Multi-domain]  Cd Length: 263  Bit Score: 41.97  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  148 EMDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFEGTDTlFALMQYSNLLKIHFTFTQfrtSPSQQSLVDPI--VQLKGLT 225
Cdd:COG2425   118 EGPVVLCVDTSGSMAGSKEAAAKAAALALLRALRPNRR-FGVILFDTEVVEDLPLTA---DDGLEDAIEFLsgLFAGGGT 193

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 970949440  226 FTATGILTVVTQLfhhknGARKSAKKILIVITDGQkykDPLEYSDVIPQA-EKAGIIR-YAIGVGHA 290
Cdd:COG2425   194 DIAPALRAALELL-----EEPDYRNADIVLITDGE---AGVSPEELLREVrAKESGVRlFTVAIGDA 252
Integrin_alpha pfam00357
Integrin alpha cytoplasmic region; This family contains the short intracellular region of ...
 1125-1139 2.12e-03

Integrin alpha cytoplasmic region; This family contains the short intracellular region of integrin alpha chains.


Pssm-ID: 459778  Cd Length: 15  Bit Score: 36.32  E-value: 2.12e-03
                           10
                   ....*....|....*
gi 970949440  1125 KLGFFKRHYKEMLED 1139
Cdd:pfam00357    1 KCGFFKRNYPPQEEE 15
vWA_subgroup cd01465
VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 152-291 3.56e-03

VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known.


Pssm-ID: 238742 [Multi-domain]  Cd Length: 170  Bit Score: 39.56  E-value: 3.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970949440  152 VFLIDGSGSIDQNDFNQMKGFVQAVMGQFEGTDTLfALMQYSNLLKIHFTFTQFRtspSQQSLVDPIVQLK--GLTFTAT 229
Cdd:cd01465     4 VFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRL-AIVTYDGAAETVLPATPVR---DKAAILAAIDRLTagGSTAGGA 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 970949440  230 GILTVVTQLFHHKNgarKSAKKILIVITDGQKY---KDPLEYSDVIPQAEKAGIIRYAIGVGHAF 291
Cdd:cd01465    80 GIQLGYQEAQKHFV---PGGVNRILLATDGDFNvgeTDPDELARLVAQKRESGITLSTLGFGDNY 141
vWA_norD_type cd01454
norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate ...
 240-290 4.91e-03

norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------> NO2- ------> NO -------> N2O ---------> N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.


Pssm-ID: 238731 [Multi-domain]  Cd Length: 174  Bit Score: 39.23  E-value: 4.91e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 970949440  240 HHKNGARKSAKKILIVITDGQKYKDPleYSDVIPQ-----------AEKAGIIRYAIGVGHA 290
Cdd:cd01454    94 AERLLARPEKRKILLVISDGEPNDLD--YYEGNVFatedalravieARKLGIEVFGITIDRD 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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