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Conserved domains on  [gi|970839889|gb|ALU66378|]
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cytochrome c oxidase subunit II, partial (mitochondrion) [Sphenarium macrophallicum]

Protein Classification

cytochrome c oxidase subunit II( domain architecture ID 11475927)

cytochrome c oxidase subunit II, part of the functional core of the enzyme, transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit I

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COX2 MTH00154
cytochrome c oxidase subunit II; Provisional
 1-161 2.04e-101

cytochrome c oxidase subunit II; Provisional


:

Pssm-ID: 214438 [Multi-domain]  Cd Length: 227  Bit Score: 290.19  E-value: 2.04e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00154  32 IMITILVGYMMISLLFNKFTNRFLLEGQEIEIIWTILPAIILIFIALPSLRLLYLLDEVNNPSITLKTIGHQWYWSYEYS 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DFINIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGL 159
Cdd:MTH00154 112 DFKNIEFDSYMIPTNElENNGFRLLDVDNRLVLPMNTQIRILITAADVIHSWTVPSLGVKVDAVPGRLNQLNFLINRPGL 191


                 ..
gi 970839889 160 YF 161
Cdd:MTH00154 192 FF 193
 
Name Accession Description Interval E-value
COX2 MTH00154
cytochrome c oxidase subunit II; Provisional
 1-161 2.04e-101

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214438 [Multi-domain]  Cd Length: 227  Bit Score: 290.19  E-value: 2.04e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00154  32 IMITILVGYMMISLLFNKFTNRFLLEGQEIEIIWTILPAIILIFIALPSLRLLYLLDEVNNPSITLKTIGHQWYWSYEYS 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DFINIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGL 159
Cdd:MTH00154 112 DFKNIEFDSYMIPTNElENNGFRLLDVDNRLVLPMNTQIRILITAADVIHSWTVPSLGVKVDAVPGRLNQLNFLINRPGL 191


                 ..
gi 970839889 160 YF 161
Cdd:MTH00154 192 FF 193
CcO_II_C cd13912
C-terminal domain of Cytochrome c Oxidase subunit II; Cytochrome c Oxidase (CcO), the terminal ...
 64-161 7.55e-60

C-terminal domain of Cytochrome c Oxidase subunit II; Cytochrome c Oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit II contains a copper-copper binuclear site called CuA, which is believed to be involved in electron transfer from cytochrome c to the binuclear center (active site) in subunit I.


Pssm-ID: 259979 [Multi-domain]  Cd Length: 130  Bit Score: 181.61  E-value: 7.55e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  64 ITIKSIGRQWYWSYEYSDFINIEFDAYMLPEEEQS-NKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDA 142
Cdd:cd13912    3 LTIKAIGHQWYWSYEYSDFNDLEFDSYMIPEDDLEkGQLRLLEVDNRLVVPVNTHIRVLVTSADVIHSWAVPSLGIKVDA 82

                         90
                 ....*....|....*....
gi 970839889 143 TPGRLNQSTFSINRPGLYF 161
Cdd:cd13912   83 VPGRLNQTSFFIERPGVYY 101
COX2 pfam00116
Cytochrome C oxidase subunit II, periplasmic domain;
64-161 8.36e-56

Cytochrome C oxidase subunit II, periplasmic domain;


Pssm-ID: 395066 [Multi-domain]  Cd Length: 120  Bit Score: 171.05  E-value: 8.36e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   64 ITIKSIGRQWYWSYEYSDFINIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDA 142
Cdd:pfam00116   1 LTIKAIGHQWYWSYEYTDFGDLEFDSYMIPTEDlEEGQLRLLEVDNRVVLPVETHIRVIVTAADVIHSWAVPSLGIKTDA 80

                          90
                  ....*....|....*....
gi 970839889  143 TPGRLNQSTFSINRPGLYF 161
Cdd:pfam00116  81 VPGRLNQTSFSIDREGVFY 99
CyoA COG1622
Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];
26-160 1.57e-31

Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];


Pssm-ID: 441229 [Multi-domain]  Cd Length: 229  Bit Score: 112.61  E-value: 1.57e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  26 HGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYsdfiniefdaymlPEEEQsnkfrllD 105
Cdd:COG1622   75 HNTKLEIVWTVIPIIIVIVLAVPTLRVLHALDDAPEDPLTVEVTGYQWKWLFRY-------------PDQGI-------A 134

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 970839889 106 VDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGLY 160
Cdd:COG1622  135 TVNELVLPVGRPVRFLLTSADVIHSFWVPALGGKQDAIPGRVTELWFTADKPGTY 189
CoxB TIGR02866
cytochrome c oxidase, subunit II; Cytochrome c oxidase is the terminal electron acceptor of ...
 1-160 1.64e-25

cytochrome c oxidase, subunit II; Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions. [Energy metabolism, Electron transport]


Pssm-ID: 274329 [Multi-domain]  Cd Length: 199  Bit Score: 96.30  E-value: 1.64e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889    1 IMITIIVGYSLNYIMMiKFKNRN------MLHGH-LIETIWTMIPA-ITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQ 72
Cdd:TIGR02866  21 TLISLLVAALLAYVVW-KFRRKGdeekpsQIHGNrRLEYVWTVIPLiIVVGLFAATAKGLLYLERPIPKDALKVKVTGYQ 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   73 WYWSYEYSDFiniefdaymlpeeeqsnkfrLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTF 152
Cdd:TIGR02866 100 WWWDFEYPES--------------------GFTTVNELVLPAGTPVELQVTSKDVIHSFWVPELGGKIDAIPGQTNALWF 159


                  ....*...
gi 970839889  153 SINRPGLY 160
Cdd:TIGR02866 160 NADEPGVY 167
 
Name Accession Description Interval E-value
COX2 MTH00154
cytochrome c oxidase subunit II; Provisional
 1-161 2.04e-101

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214438 [Multi-domain]  Cd Length: 227  Bit Score: 290.19  E-value: 2.04e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00154  32 IMITILVGYMMISLLFNKFTNRFLLEGQEIEIIWTILPAIILIFIALPSLRLLYLLDEVNNPSITLKTIGHQWYWSYEYS 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DFINIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGL 159
Cdd:MTH00154 112 DFKNIEFDSYMIPTNElENNGFRLLDVDNRLVLPMNTQIRILITAADVIHSWTVPSLGVKVDAVPGRLNQLNFLINRPGL 191


                 ..
gi 970839889 160 YF 161
Cdd:MTH00154 192 FF 193
COX2 MTH00140
cytochrome c oxidase subunit II; Provisional
 1-161 1.62e-78

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214430 [Multi-domain]  Cd Length: 228  Bit Score: 232.52  E-value: 1.62e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00140  32 VLIFSFVMYMLVLLLFNKFSCRTILEAQKLETIWTIVPALILVFLALPSLRLLYLLDETNNPLLTVKAIGHQWYWSYEYS 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DFINIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGL 159
Cdd:MTH00140 112 DFSVIEFDSYMVPENElELGDFRLLEVDNRLVLPYSVDTRVLVTSADVIHSWTVPSLGVKVDAIPGRLNQLSFEPKRPGV 191


                 ..
gi 970839889 160 YF 161
Cdd:MTH00140 192 FY 193
COX2 MTH00117
cytochrome c oxidase subunit II; Provisional
 1-161 2.24e-76

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177178 [Multi-domain]  Cd Length: 227  Bit Score: 227.10  E-value: 2.24e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00117  32 LLISSLVLYLLTLMLTTKLTHTNTVDAQEVELIWTILPAIVLILLALPSLRILYLMDEINNPHLTIKAIGHQWYWSYEYT 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DFINIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGL 159
Cdd:MTH00117 112 DYKDLSFDSYMIPTQDlPNGHFRLLEVDHRMVIPMESPIRILITAEDVLHSWAVPSLGVKTDAVPGRLNQTSFITTRPGV 191


                 ..
gi 970839889 160 YF 161
Cdd:MTH00117 192 FY 193
COX2 MTH00139
cytochrome c oxidase subunit II; Provisional
 1-161 3.27e-75

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214429 [Multi-domain]  Cd Length: 226  Bit Score: 224.21  E-value: 3.27e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00139  32 IMILSFVGYISLSLMSNKFTSRSLLESQEVETIWTVLPAFILLFLALPSLRLLYLMDEVSDPYLTFKAVGHQWYWSYEYS 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DFINIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGL 159
Cdd:MTH00139 112 DFKNLSFDSYMIPTEDlSSGEFRLLEVDNRLVLPYKSNIRALITAADVLHSWTVPSLGVKIDAVPGRLNQVGFFINRPGV 191


                 ..
gi 970839889 160 YF 161
Cdd:MTH00139 192 FY 193
COX2 MTH00008
cytochrome c oxidase subunit II; Validated
 1-161 7.48e-73

cytochrome c oxidase subunit II; Validated


Pssm-ID: 164584 [Multi-domain]  Cd Length: 228  Bit Score: 218.19  E-value: 7.48e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00008  32 TLVLTVVGYAMTSLMFNKLSNRYILEAQQIETIWTILPALILLFLAFPSLRLLYLMDEVSNPSITLKTIGHQWYWSYEYS 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DFINIEFDAYMLPEEEQS-NKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGL 159
Cdd:MTH00008 112 DFSNLEFDSYMLPTSDLSpGQFRLLEVDNRAVLPMQTEIRVLVTAADVIHSWTVPSLGVKVDAVPGRLNQIGFTITRPGV 191


                 ..
gi 970839889 160 YF 161
Cdd:MTH00008 192 FY 193
COX2 MTH00168
cytochrome c oxidase subunit II; Provisional
 1-161 1.36e-72

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177223 [Multi-domain]  Cd Length: 225  Bit Score: 217.16  E-value: 1.36e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00168  32 VLILTLVLYSLLVLVTSKYTNRFLLDSQMIEFVWTIIPAFILISLALPSLRLLYLMDEIDKPDLTIKAVGHQWYWSYEYT 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DFINIEFDAYMLPEEEQSN-KFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGL 159
Cdd:MTH00168 112 DYNDLEFDSYMVPTQDLSPgQFRLLEVDNRLVLPMDSKIRVLVTSADVLHSWTLPSLGLKMDAVPGRLNQLAFLSSRPGS 191


                 ..
gi 970839889 160 YF 161
Cdd:MTH00168 192 FY 193
COX2 MTH00038
cytochrome c oxidase subunit II; Provisional
 1-161 9.43e-71

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177113 [Multi-domain]  Cd Length: 229  Bit Score: 212.64  E-value: 9.43e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00038  32 TLITILVFYGLASLLFSSPTNRFFLEGQELETIWTIVPAFILIFIALPSLQLLYLMDEVNNPFLTIKAIGHQWYWSYEYT 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DFINIEFDAYMLPEEEQSNKF-RLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGL 159
Cdd:MTH00038 112 DYNDLEFDSYMVPTSDLSTGLpRLLEVDNRLVLPYQTPIRVLVSSADVLHSWAVPSLGVKMDAVPGRLNQTTFFISRTGL 191


                 ..
gi 970839889 160 YF 161
Cdd:MTH00038 192 FY 193
COX2 MTH00098
cytochrome c oxidase subunit II; Validated
 2-161 8.18e-66

cytochrome c oxidase subunit II; Validated


Pssm-ID: 177160 [Multi-domain]  Cd Length: 227  Bit Score: 200.33  E-value: 8.18e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   2 MITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYSD 81
Cdd:MTH00098  33 LISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTD 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  82 FINIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGLY 160
Cdd:MTH00098 113 YEDLSFDSYMIPTSDlKPGELRLLEVDNRVVLPMEMPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSTRPGLY 192


                 .
gi 970839889 161 F 161
Cdd:MTH00098 193 Y 193
COX2 MTH00076
cytochrome c oxidase subunit II; Provisional
 1-161 1.32e-65

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 164646 [Multi-domain]  Cd Length: 228  Bit Score: 199.62  E-value: 1.32e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00076  32 FLISTLVLYIITIMMTTKLTNTNTMDAQEIEMVWTIMPAIILIVIALPSLRILYLMDEINDPHLTVKAIGHQWYWSYEYT 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DFINIEFDAYMLPEEEQS-NKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGL 159
Cdd:MTH00076 112 DYEDLSFDSYMIPTQDLTpGQFRLLEVDNRMVVPMESPIRMLITAEDVLHSWAVPSLGIKTDAIPGRLNQTSFIASRPGV 191


                 ..
gi 970839889 160 YF 161
Cdd:MTH00076 192 YY 193
COX2 MTH00129
cytochrome c oxidase subunit II; Provisional
 2-161 6.93e-65

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177187 [Multi-domain]  Cd Length: 230  Bit Score: 198.01  E-value: 6.93e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   2 MITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYSD 81
Cdd:MTH00129  33 LISTLVLYIIVAMVSTKLTNKYILDSQEIEIIWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTD 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  82 FINIEFDAYMLPEEEQS-NKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGLY 160
Cdd:MTH00129 113 YEDLGFDSYMIPTQDLTpGQFRLLEADHRMVVPVESPIRVLVSAEDVLHSWAVPALGVKMDAVPGRLNQTAFIASRPGVF 192


                 .
gi 970839889 161 F 161
Cdd:MTH00129 193 Y 193
COX2 MTH00185
cytochrome c oxidase subunit II; Provisional
 2-161 7.02e-65

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 164736 [Multi-domain]  Cd Length: 230  Bit Score: 198.19  E-value: 7.02e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   2 MITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYSD 81
Cdd:MTH00185  33 LISTLVLYIIVAMVTTKLTNKYILDSQEIEIVWTILPAIILIMIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTD 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  82 FINIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGLY 160
Cdd:MTH00185 113 YEQLEFDSYMTPTQDlTPGQFRLLETDHRMVVPMESPIRVLITAEDVLHSWTVPALGVKMDAVPGRLNQATFIISRPGLY 192


                 .
gi 970839889 161 F 161
Cdd:MTH00185 193 Y 193
COX2 MTH00023
cytochrome c oxidase subunit II; Validated
 1-161 1.12e-63

cytochrome c oxidase subunit II; Validated


Pssm-ID: 214402 [Multi-domain]  Cd Length: 240  Bit Score: 195.35  E-value: 1.12e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00023  41 IIIITVVLWLIVEALNGKFYDRFLVDGTFLEIVWTIIPAVILVFIALPSLKLLYLMDEVVSPALTIKAIGHQWYWSYEYS 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DFI--NIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRP 157
Cdd:MTH00023 121 DYEgeTLEFDSYMVPTSDlNSGDFRLLEVDNRLVVPINTHVRILVTGADVLHSFAVPSLGLKIDAVPGRLNQTGFFIKRP 200


                 ....
gi 970839889 158 GLYF 161
Cdd:MTH00023 201 GVFY 204
COX2 MTH00051
cytochrome c oxidase subunit II; Provisional
 1-161 1.99e-61

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177126 [Multi-domain]  Cd Length: 234  Bit Score: 189.22  E-value: 1.99e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   1 IMITIIVGYSLNYIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYS 80
Cdd:MTH00051  34 TIIITTVLWLIIRALTTKYYHKYLFEGTLIEIIWTLIPAAILIFIAFPSLKLLYLMDEVIDPALTIKAIGHQWYWSYEYS 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  81 DF--INIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRP 157
Cdd:MTH00051 114 DYgtDTIEFDSYMIPTSDlNSGDLRLLEVDNRLIVPIQTQVRVLVTAADVLHSFAVPSLSVKIDAVPGRLNQTSFFIKRP 193


                 ....
gi 970839889 158 GLYF 161
Cdd:MTH00051 194 GVFY 197
CcO_II_C cd13912
C-terminal domain of Cytochrome c Oxidase subunit II; Cytochrome c Oxidase (CcO), the terminal ...
 64-161 7.55e-60

C-terminal domain of Cytochrome c Oxidase subunit II; Cytochrome c Oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit II contains a copper-copper binuclear site called CuA, which is believed to be involved in electron transfer from cytochrome c to the binuclear center (active site) in subunit I.


Pssm-ID: 259979 [Multi-domain]  Cd Length: 130  Bit Score: 181.61  E-value: 7.55e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  64 ITIKSIGRQWYWSYEYSDFINIEFDAYMLPEEEQS-NKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDA 142
Cdd:cd13912    3 LTIKAIGHQWYWSYEYSDFNDLEFDSYMIPEDDLEkGQLRLLEVDNRLVVPVNTHIRVLVTSADVIHSWAVPSLGIKVDA 82

                         90
                 ....*....|....*....
gi 970839889 143 TPGRLNQSTFSINRPGLYF 161
Cdd:cd13912   83 VPGRLNQTSFFIERPGVYY 101
COX2 pfam00116
Cytochrome C oxidase subunit II, periplasmic domain;
64-161 8.36e-56

Cytochrome C oxidase subunit II, periplasmic domain;


Pssm-ID: 395066 [Multi-domain]  Cd Length: 120  Bit Score: 171.05  E-value: 8.36e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   64 ITIKSIGRQWYWSYEYSDFINIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDA 142
Cdd:pfam00116   1 LTIKAIGHQWYWSYEYTDFGDLEFDSYMIPTEDlEEGQLRLLEVDNRVVLPVETHIRVIVTAADVIHSWAVPSLGIKTDA 80

                          90
                  ....*....|....*....
gi 970839889  143 TPGRLNQSTFSINRPGLYF 161
Cdd:pfam00116  81 VPGRLNQTSFSIDREGVFY 99
COX2 MTH00027
cytochrome c oxidase subunit II; Provisional
 2-161 8.48e-50

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214405 [Multi-domain]  Cd Length: 262  Bit Score: 160.58  E-value: 8.48e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   2 MITIIVGYSLNYIMMIKFKNR------NMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSN-NTLITIKSIGRQWY 74
Cdd:MTH00027  58 ILTIIVGVVLWLIIRILLGNNyysyywNKLDGSLIEVIWTLIPAFILILIAFPSLRLLYIMDECGfSANITIKVTGHQWY 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  75 WSYEYSDF--INIEFDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQST 151
Cdd:MTH00027 138 WSYSYEDYgeKNIEFDSYMIPTADlEFGDLRLLEVDNRLILPVDTNVRVLITAADVLHSWTVPSLAVKMDAVPGRINETG 217

                        170
                 ....*....|
gi 970839889 152 FSINRPGLYF 161
Cdd:MTH00027 218 FLIKRPGIFY 227
COX2 MTH00080
cytochrome c oxidase subunit II; Provisional
 13-161 4.44e-44

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 177149 [Multi-domain]  Cd Length: 231  Bit Score: 145.15  E-value: 4.44e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  13 YIMMIKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRLLYMLD----DSNntlITIKSIGRQWYWSYEYSDFINIEFD 88
Cdd:MTH00080  46 LISNNFYFKSKKIEYQFGELLCSVFPVLILLMQMVPSLSLLYYYGlmnlDSN---LTVKVTGHQWYWSYEFSDIPGLEFD 122

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 970839889  89 AYMLPEEEQS-NKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGLYF 161
Cdd:MTH00080 123 SYMKSLDQLRlGEPRLLEVDNRCVLPCDTNIRFCITSSDVIHSWALPSLSIKMDAMSGILSTLCYSFPMPGVFY 196
CyoA COG1622
Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];
26-160 1.57e-31

Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion];


Pssm-ID: 441229 [Multi-domain]  Cd Length: 229  Bit Score: 112.61  E-value: 1.57e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  26 HGHLIETIWTMIPAITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQWYWSYEYsdfiniefdaymlPEEEQsnkfrllD 105
Cdd:COG1622   75 HNTKLEIVWTVIPIIIVIVLAVPTLRVLHALDDAPEDPLTVEVTGYQWKWLFRY-------------PDQGI-------A 134

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 970839889 106 VDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGLY 160
Cdd:COG1622  135 TVNELVLPVGRPVRFLLTSADVIHSFWVPALGGKQDAIPGRVTELWFTADKPGTY 189
COX2 MTH00047
cytochrome c oxidase subunit II; Provisional
 29-160 3.57e-27

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 214412 [Multi-domain]  Cd Length: 194  Bit Score: 100.41  E-value: 3.57e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  29 LIETIWTMIPaiTLIFIALPSLRLLYMLDDSN-NTLITIKSIGRQWYWSYEYSDfiNIEFDAYMlpeeeqsNKFRLLdVD 107
Cdd:MTH00047  48 VLELLWTVVP--TLLVLVLCFLNLNFITSDLDcFSSETIKVIGHQWYWSYEYSF--GGSYDSFM-------TDDIFG-VD 115

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 970839889 108 NRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGLY 160
Cdd:MTH00047 116 KPLRLVYGVPYHLLVTSSDVIHSFSVPDLNLKMDAIPGRINHLFFCPDRHGVF 168
CoxB TIGR02866
cytochrome c oxidase, subunit II; Cytochrome c oxidase is the terminal electron acceptor of ...
 1-160 1.64e-25

cytochrome c oxidase, subunit II; Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions. [Energy metabolism, Electron transport]


Pssm-ID: 274329 [Multi-domain]  Cd Length: 199  Bit Score: 96.30  E-value: 1.64e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889    1 IMITIIVGYSLNYIMMiKFKNRN------MLHGH-LIETIWTMIPA-ITLIFIALPSLRLLYMLDDSNNTLITIKSIGRQ 72
Cdd:TIGR02866  21 TLISLLVAALLAYVVW-KFRRKGdeekpsQIHGNrRLEYVWTVIPLiIVVGLFAATAKGLLYLERPIPKDALKVKVTGYQ 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889   73 WYWSYEYSDFiniefdaymlpeeeqsnkfrLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTF 152
Cdd:TIGR02866 100 WWWDFEYPES--------------------GFTTVNELVLPAGTPVELQVTSKDVIHSFWVPELGGKIDAIPGQTNALWF 159


                  ....*...
gi 970839889  153 SINRPGLY 160
Cdd:TIGR02866 160 NADEPGVY 167
PTZ00047 PTZ00047
cytochrome c oxidase subunit II; Provisional
 87-161 4.80e-19

cytochrome c oxidase subunit II; Provisional


Pssm-ID: 240243 [Multi-domain]  Cd Length: 162  Bit Score: 78.71  E-value: 4.80e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 970839889  87 FDAYMLPEEE-QSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGLYF 161
Cdd:PTZ00047  51 FQSNLVTDEDlKPGMLRQLEVDKRLTLPTRTHIRFLITATDVIHSWSVPSLGIKADAIPGRLHKINTFILREGVFY 126
CuRO_HCO_II_like cd13842
Cupredoxin domain of Heme-copper oxidase subunit II; Heme-copper oxidases are transmembrane ...
 64-160 1.71e-15

Cupredoxin domain of Heme-copper oxidase subunit II; Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from two to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian cytochrome c oxidase (CcO) are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria. Subunit II is found in CcO, ubiquinol oxidase, and the ba3-like oxidases, while the cbb3 oxidases contain alternative additional subunits. Additionally, nitrous oxide reductase contains the globular portion of subunit II as a domain within its structure. In some families, subunit II contains a copper-copper binuclear center that is involved in the transfer of electrons from the substrate to the binuclear center (active site) in subunit I.


Pssm-ID: 259911 [Multi-domain]  Cd Length: 95  Bit Score: 67.71  E-value: 1.71e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  64 ITIKSIGRQWYWSYEYSDfiniefdaymlpeeeqsnkfrlLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDAT 143
Cdd:cd13842    1 LTVYVTGVQWSWTFIYPN----------------------VRTPNEIVVPAGTPVRFRVTSPDVIHGFYIPNLGVKVDAV 58

                         90
                 ....*....|....*..
gi 970839889 144 PGRLNQSTFSINRPGLY 160
Cdd:cd13842   59 PGYTSELWFVADKPGTY 75
CuRO_HCO_II_like_5 cd13919
Uncharacterized subfamily with similarity to Heme-copper oxidase subunit II cupredoxin domain; ...
 64-160 9.18e-15

Uncharacterized subfamily with similarity to Heme-copper oxidase subunit II cupredoxin domain; Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from two to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian cytochrome c oxidase (CcO) are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria. Subunit II is found in CcO, ubiquinol oxidase, and the ba3-like oxidases, while the cbb3 oxidases contain alternative additional subunits. Additionally, nitrous oxide reductase contains the globular portion of subunit II as a domain within its structure. In some families, subunit II contains a copper-copper binuclear center that is involved in the transfer of electrons from the substrate to the binuclear center (active site) in subunit I.


Pssm-ID: 259986 [Multi-domain]  Cd Length: 107  Bit Score: 66.12  E-value: 9.18e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  64 ITIKSIGRQWYWSYEYsdfiniefdaymlPEEEQSNKFRLLDVDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDAT 143
Cdd:cd13919    2 LVVEVTAQQWAWTFRY-------------PGGDGKLGTDDDVTSPELHLPVGRPVLFNLRSKDVIHSFWVPEFRVKQDAV 68

                         90
                 ....*....|....*..
gi 970839889 144 PGRLNQSTFSINRPGLY 160
Cdd:cd13919   69 PGRTTRLWFTPTREGEY 85
CuRO_HCO_II_like_2 cd13915
Uncharacterized subfamily with similarity to Heme-copper oxidase subunit II cupredoxin domain; ...
 64-160 4.05e-14

Uncharacterized subfamily with similarity to Heme-copper oxidase subunit II cupredoxin domain; Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from two to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian cytochrome c oxidase (CcO) are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria. Subunit II is found in CcO, ubiquinol oxidase, and the ba3-like oxidases, while the cbb3 oxidases contain alternative additional subunits. Additionally, nitrous oxide reductase contains the globular portion of subunit II as a domain within its structure. In some families, subunit II contains a copper-copper binuclear center that is involved in the transfer of electrons from the substrate to the binuclear center (active site) in subunit I.


Pssm-ID: 259982 [Multi-domain]  Cd Length: 98  Bit Score: 64.19  E-value: 4.05e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  64 ITIKSIGRQWYWSYEYsdfiniefdaymlPEEEQSnkfrlldvDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDAT 143
Cdd:cd13915    2 LEIQVTGRQWMWEFTY-------------PNGKRE--------INELHVPVGKPVRLILTSKDVIHSFYVPAFRIKQDVV 60

                         90
                 ....*....|....*..
gi 970839889 144 PGRLNQSTFSINRPGLY 160
Cdd:cd13915   61 PGRYTYLWFEATKPGEY 77
CuRO_CcO_Caa3_II cd04213
The cupredoxin domain of Caa3 type Cytochrome c oxidase subunit II; Cytochrome c oxidase (CcO), ...
 64-161 3.59e-12

The cupredoxin domain of Caa3 type Cytochrome c oxidase subunit II; Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of most bacteria, is a multi-chain transmembrane protein located in the inner membrane the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Caa3 type of CcO Subunit II contains a copper-copper binuclear site called CuA, which is believed to be involved in electron transfer from cytochrome c to the cytochromes a, a3 and CuB active site in subunit I.


Pssm-ID: 259875 [Multi-domain]  Cd Length: 103  Bit Score: 59.17  E-value: 3.59e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  64 ITIKSIGRQWYWSYEYSDFINIEFdaymlpeeEQSNKFRlldvdnrtlIPINSEIRMLTSASDVLHSWTIPSMGIKVDAT 143
Cdd:cd04213    2 LTIEVTGHQWWWEFRYPDEPGRGI--------VTANELH---------IPVGRPVRLRLTSADVIHSFWVPSLAGKMDMI 64

                         90
                 ....*....|....*...
gi 970839889 144 PGRLNQSTFSINRPGLYF 161
Cdd:cd04213   65 PGRTNRLWLQADEPGVYR 82
COX2_TM pfam02790
Cytochrome C oxidase subunit II, transmembrane domain; The N-terminal domain of cytochrome C ...
 1-52 3.59e-10

Cytochrome C oxidase subunit II, transmembrane domain; The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices.


Pssm-ID: 397083 [Multi-domain]  Cd Length: 89  Bit Score: 53.49  E-value: 3.59e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 970839889    1 IMITIIVGYSLNYIMM------IKFKNRNMLHGHLIETIWTMIPAITLIFIALPSLRL 52
Cdd:pfam02790  32 TLILILVLYILVTCLIrfnrrkNPITARYTTHGQTIEIIWTIIPAVILILIALPSFKL 89
CuRO_HCO_II_like_3 cd13914
Uncharacterized subfamily with similarity to Heme-copper oxidase subunit II cupredoxin domain; ...
 64-160 5.83e-10

Uncharacterized subfamily with similarity to Heme-copper oxidase subunit II cupredoxin domain; Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from two to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian cytochrome c oxidase (CcO) are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria. Subunit II is found in CcO, ubiquinol oxidase, and the ba3-like oxidases, while the cbb3 oxidases contain alternative additional subunits. Additionally, nitrous oxide reductase contains the globular portion of subunit II as a domain within its structure. In some families, subunit II contains a copper-copper binuclear center that is involved in the transfer of electrons from the substrate to the binuclear center (active site) in subunit I.


Pssm-ID: 259981 [Multi-domain]  Cd Length: 108  Bit Score: 53.57  E-value: 5.83e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  64 ITIKSIGRQWYWSYEYsdfiniefdaymlPEEEQSNkfrlldvDNRTLIPINSEIRMLTSASDVLHSWTIPSMGIKVDAT 143
Cdd:cd13914    1 VEIEVEAYQWGWEFSY-------------PEANVTT-------SEQLVIPADRPVYFRITSRDVIHAFHVPELGLKQDAF 60

                         90
                 ....*....|....*..
gi 970839889 144 PGRLNQSTFSINRPGLY 160
Cdd:cd13914   61 PGQYNTIKTEATEEGEY 77
CuRO_HCO_II_like_6 cd13918
Uncharacterized subfamily with similarity to Heme-copper oxidase subunit II cupredoxin domain; ...
 52-160 7.75e-08

Uncharacterized subfamily with similarity to Heme-copper oxidase subunit II cupredoxin domain; Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from two to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian cytochrome c oxidase (CcO) are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria. Subunit II is found in CcO, ubiquinol oxidase, and the ba3-like oxidases, while the cbb3 oxidases contain alternative additional subunits. Additionally, nitrous oxide reductase contains the globular portion of subunit II as a domain within its structure. In some families, subunit II contains a copper-copper binuclear center that is involved in the transfer of electrons from the substrate to the binuclear center (active site) in subunit I.


Pssm-ID: 259985 [Multi-domain]  Cd Length: 139  Bit Score: 48.61  E-value: 7.75e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970839889  52 LLYMLD---DSNNTLITIKSIGRQWYWSYEYSDfiniefdaymlpEEEQSNKFRlldvdnrtlIPINSEIRMLTSASDVL 128
Cdd:cd13918   18 LLYVEDppdEADEDALEVEVEGFQFGWQFEYPN------------GVTTGNTLR---------VPADTPIALRVTSTDVF 76

                         90       100       110
                 ....*....|....*....|....*....|..
gi 970839889 129 HSWTIPSMGIKVDATPGRLNQSTFSINRPGLY 160
Cdd:cd13918   77 HTFGIPELRVKADAIPGEYTSTWFEADEPGTY 108
ba3_CcO_II_C cd13913
C-terminal cupredoxin domain of Ba3-like heme-copper oxidase subunit II; The ba3 family of ...
 112-160 2.11e-04

C-terminal cupredoxin domain of Ba3-like heme-copper oxidase subunit II; The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea, which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead, they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively.


Pssm-ID: 259980 [Multi-domain]  Cd Length: 99  Bit Score: 38.32  E-value: 2.11e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 970839889 112 IPINSEIRMLTSASDVLHSWTIPSMGIKVDATPGRLNQSTFSINRPGLY 160
Cdd:cd13913   29 VPAGATVTFYVTSKDVIHGFEIAGTNVNVMVIPGQVSSVTYTFDKPGEY 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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