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Conserved domains on  [gi|966643482|gb|KTF78394|]
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hypothetical protein cypCar_00020777, partial [Cyprinus carpio]

Protein Classification

cysteine rich repeat-containing protein( domain architecture ID 10467185)

cysteine rich repeat-containing protein similar to human Golgi apparatus protein 1 that binds fibroblast growth factor and E-selectin, and to cysteine-rich fibroblast growth factor receptor that regulates intracellular FGF-1 and FGF-2 levels

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cys_rich_FGFR pfam00839
Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in ...
 45-104 1.76e-09

Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in multiple copies in a protein that binds to fibroblast growth factors. The repeat is also found in MG160 and E-selectin ligand (ESL-1).


:

Pssm-ID: 425899  Cd Length: 58  Bit Score: 50.82  E-value: 1.76e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 966643482   45 QCHQYITKMTSIIFSDYRLICGFMDKCREDINTLqCGSIAVGekdlhsQGEVIACLERAL 104
Cdd:pfam00839   2 ECRQEVLRLQEEEAEDYRLDPELQKACKDDIEKF-CSDVAEG------KGQVLECLKEHL 54
Cys_rich_FGFR pfam00839
Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in ...
 119-156 6.42e-07

Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in multiple copies in a protein that binds to fibroblast growth factors. The repeat is also found in MG160 and E-selectin ligand (ESL-1).


:

Pssm-ID: 425899  Cd Length: 58  Bit Score: 44.27  E-value: 6.42e-07
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 966643482  119 DECKKAIMRVAELSADDFHLDRYLYFSCRDDRERFCEH 156
Cdd:pfam00839   1 PECRQEVLRLQEEEAEDYRLDPELQKACKDDIEKFCSD 38
 
Name Accession Description Interval E-value
Cys_rich_FGFR pfam00839
Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in ...
 45-104 1.76e-09

Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in multiple copies in a protein that binds to fibroblast growth factors. The repeat is also found in MG160 and E-selectin ligand (ESL-1).


Pssm-ID: 425899  Cd Length: 58  Bit Score: 50.82  E-value: 1.76e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 966643482   45 QCHQYITKMTSIIFSDYRLICGFMDKCREDINTLqCGSIAVGekdlhsQGEVIACLERAL 104
Cdd:pfam00839   2 ECRQEVLRLQEEEAEDYRLDPELQKACKDDIEKF-CSDVAEG------KGQVLECLKEHL 54
Cys_rich_FGFR pfam00839
Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in ...
 119-156 6.42e-07

Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in multiple copies in a protein that binds to fibroblast growth factors. The repeat is also found in MG160 and E-selectin ligand (ESL-1).


Pssm-ID: 425899  Cd Length: 58  Bit Score: 44.27  E-value: 6.42e-07
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 966643482  119 DECKKAIMRVAELSADDFHLDRYLYFSCRDDRERFCEH 156
Cdd:pfam00839   1 PECRQEVLRLQEEEAEDYRLDPELQKACKDDIEKFCSD 38
 
Name Accession Description Interval E-value
Cys_rich_FGFR pfam00839
Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in ...
 45-104 1.76e-09

Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in multiple copies in a protein that binds to fibroblast growth factors. The repeat is also found in MG160 and E-selectin ligand (ESL-1).


Pssm-ID: 425899  Cd Length: 58  Bit Score: 50.82  E-value: 1.76e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 966643482   45 QCHQYITKMTSIIFSDYRLICGFMDKCREDINTLqCGSIAVGekdlhsQGEVIACLERAL 104
Cdd:pfam00839   2 ECRQEVLRLQEEEAEDYRLDPELQKACKDDIEKF-CSDVAEG------KGQVLECLKEHL 54
Cys_rich_FGFR pfam00839
Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in ...
 119-156 6.42e-07

Cysteine rich repeat; This cysteine rich repeat contains four cysteines. It is found in multiple copies in a protein that binds to fibroblast growth factors. The repeat is also found in MG160 and E-selectin ligand (ESL-1).


Pssm-ID: 425899  Cd Length: 58  Bit Score: 44.27  E-value: 6.42e-07
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 966643482  119 DECKKAIMRVAELSADDFHLDRYLYFSCRDDRERFCEH 156
Cdd:pfam00839   1 PECRQEVLRLQEEEAEDYRLDPELQKACKDDIEKFCSD 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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