conserved hypothetical protein [Prevotella intermedia]
List of domain hits
Name | Accession | Description | Interval | E-value | ||
TssD super family | cl39188 | Hemolysin coregulated protein Hcp (TssD); T6SSs are toxin delivery systems. It is a ... |
10-63 | 5.28e-08 | ||
Hemolysin coregulated protein Hcp (TssD); T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. These tube and trans-envelope sub-assemblies are linked via TssK. This entry comprises family members such as the inner tube protein Hcp (TssD). Hcp proteins form hexamers that stack to form the inner tube/needle structure of the puncturing device. Other functions have also been described for Hcp proteins, for example, some Hcp proteins have been shown to have a chaperone function in that they bind to and stabilize effectors. In addition, there are 'evolved' Hcp proteins that have the Hcp domain at the N-terminal half of the protein and a toxic effector function present in the C-terminal portion of the protein. The actual alignment was detected with superfamily member pfam17642: Pssm-ID: 435939 Cd Length: 127 Bit Score: 49.08 E-value: 5.28e-08
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Name | Accession | Description | Interval | E-value | ||
TssD | pfam17642 | Hemolysin coregulated protein Hcp (TssD); T6SSs are toxin delivery systems. It is a ... |
10-63 | 5.28e-08 | ||
Hemolysin coregulated protein Hcp (TssD); T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. These tube and trans-envelope sub-assemblies are linked via TssK. This entry comprises family members such as the inner tube protein Hcp (TssD). Hcp proteins form hexamers that stack to form the inner tube/needle structure of the puncturing device. Other functions have also been described for Hcp proteins, for example, some Hcp proteins have been shown to have a chaperone function in that they bind to and stabilize effectors. In addition, there are 'evolved' Hcp proteins that have the Hcp domain at the N-terminal half of the protein and a toxic effector function present in the C-terminal portion of the protein. Pssm-ID: 435939 Cd Length: 127 Bit Score: 49.08 E-value: 5.28e-08
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Name | Accession | Description | Interval | E-value | ||
TssD | pfam17642 | Hemolysin coregulated protein Hcp (TssD); T6SSs are toxin delivery systems. It is a ... |
10-63 | 5.28e-08 | ||
Hemolysin coregulated protein Hcp (TssD); T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. These tube and trans-envelope sub-assemblies are linked via TssK. This entry comprises family members such as the inner tube protein Hcp (TssD). Hcp proteins form hexamers that stack to form the inner tube/needle structure of the puncturing device. Other functions have also been described for Hcp proteins, for example, some Hcp proteins have been shown to have a chaperone function in that they bind to and stabilize effectors. In addition, there are 'evolved' Hcp proteins that have the Hcp domain at the N-terminal half of the protein and a toxic effector function present in the C-terminal portion of the protein. Pssm-ID: 435939 Cd Length: 127 Bit Score: 49.08 E-value: 5.28e-08
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Blast search parameters | ||||
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