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Conserved domains on  [gi|965686100|dbj|BAU05242|]
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Ig domain protein group 1 domain protein [Fischerella sp. NIES-3754]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6605 pfam20254
Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown ...
 573-972 9.93e-123

Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown function often found associated with bacterial Ig-like domains.


:

Pssm-ID: 466405  Cd Length: 370  Bit Score: 378.97  E-value: 9.93e-123
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   573 TIDVYRLGYYGGTGGRLMASSGslngtTQPACTLDPNTRLVECNWTTSYVVQVGNNWTSGLYVAKLTDqATSKVAHVWFV 652
Cdd:pfam20254    1 TREVYRLGWYGGKGARLVWTSA-----PLTYGAIHFHTDLVDCNWTTSFTFTVPADWRSGVYAAKLTT-ADGKQSYIPFV 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   653 VRDDSSTADVLFQSSVSTVLAYSATGGYSLY----GFNSIGGQRAFKVSYDRPVYqaTYEQSFEPDTLLRwEYNMVRWLE 728
Cdd:pfam20254   75 VRPPARRADLLVVLPTTTYQAYNNWGGYSLYdhsdGSGVAYSSRARPVSFDRPYY--RHWAFGAPGYFFA-DLPFIRWLE 151

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   729 SQGYDVTYTDNMQVHTDGQRLLNHKVFLSVGHDEYWSKEIRDYVEAARNAGINIGFFSANTCYWRVRFEDSTPAAgqvqs 808
Cdd:pfam20254  152 REGYDVDYITDHDLHRGALLLGRYRAVLSGGHDEYWSLEMRDALEAARDAGGNLAFLGGNGFYWRVRLEPDRPHV----- 226

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   809 NRVMACYKqDWALDPVAQQQGSSaATNKFRSVQNQRPENALLGVMYGSDLDLYsgynFVVTNSSDPYYANTGLQDGDQLT 888
Cdd:pfam20254  227 RRTMVCYK-TWSPDPGEYPHALT-GELLWRDRGNPRPENSLLGVGYAAQGFGP----YVVTDPDHWLFAGTGLKNGDFGG 300

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   889 LLVGYEWDFIVNNGsTPANLVVLAESPVQPSGtlptfdeppgeqslpaNQDFTKSHSTRYTASSGAKVFASGTIQWAWGL 968
Cdd:pfam20254  301 GLLGYEADRVDVLG-SPPGIVVLASSPHVDYG----------------NPGGRVRADMTYYETGGGAVFSAGSIQWAGGL 363


                   ....
gi 965686100   969 DSDG 972
Cdd:pfam20254  364 AWNG 367
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 7-147 2.69e-47

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


:

Pssm-ID: 433109  Cd Length: 143  Bit Score: 165.52  E-value: 2.69e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100     7 NQVPSISDFTDNTSYELGMKFRSATEGQITAVRFWKAPSETGTHTGRIWSATGTLLASVTFTNETASGWQEQALSTPINI 86
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 965686100    87 QANTTYVVSVNINE-YYVATYDQLGSSITNGDLsSVADGNNGVFN-GTLGAFPNNSYRNTNYF 147
Cdd:pfam13313   81 TAGTTYVVSYHAPSgRYAATAGYFTSGVTNGPL-TAPSGGNGVYAyGAGGGFPTQSYNGSNYW 142
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 269-409 9.07e-47

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


:

Pssm-ID: 433109  Cd Length: 143  Bit Score: 163.98  E-value: 9.07e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   269 TQVPSISNVTDGVPYELGMKFRSTKGGQITAIRFWKASGETGTHIGKIWTATGTLLESVTFTNETASGWQQQLLETPVNI 348
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 965686100   349 QANTTYVVSVNV-NAYYVATNDELGNSIVNGDLsSVADGNNGVYN-ITPNSFPTSSYRNSNYY 409
Cdd:pfam13313   81 TAGTTYVVSYHApSGRYAATAGYFTSGVTNGPL-TAPSGGNGVYAyGAGGGFPTQSYNGSNYW 142
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 178-226 2.06e-07

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


:

Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 48.70  E-value: 2.06e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 965686100   178 NPLVVQVKDSAGNPQSGVTVNFAVTsgGGSVSPASAVTNASGQASTTLT 226
Cdd:pfam02369    7 NTVTATVTDANGNPVPGATVTFSAS--GGTLSASSGTTDANGQATVTLT 53
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 438-486 5.84e-06

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


:

Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 44.85  E-value: 5.84e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 965686100   438 NPLVVRVVNAQNNPQSGVTVNFAITNGGgsVSPASVQTNASGEASTNLT 486
Cdd:pfam02369    7 NTVTATVTDANGNPVPGATVTFSASGGT--LSASSGTTDANGQATVTLT 53
 
Name Accession Description Interval E-value
DUF6605 pfam20254
Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown ...
 573-972 9.93e-123

Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown function often found associated with bacterial Ig-like domains.


Pssm-ID: 466405  Cd Length: 370  Bit Score: 378.97  E-value: 9.93e-123
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   573 TIDVYRLGYYGGTGGRLMASSGslngtTQPACTLDPNTRLVECNWTTSYVVQVGNNWTSGLYVAKLTDqATSKVAHVWFV 652
Cdd:pfam20254    1 TREVYRLGWYGGKGARLVWTSA-----PLTYGAIHFHTDLVDCNWTTSFTFTVPADWRSGVYAAKLTT-ADGKQSYIPFV 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   653 VRDDSSTADVLFQSSVSTVLAYSATGGYSLY----GFNSIGGQRAFKVSYDRPVYqaTYEQSFEPDTLLRwEYNMVRWLE 728
Cdd:pfam20254   75 VRPPARRADLLVVLPTTTYQAYNNWGGYSLYdhsdGSGVAYSSRARPVSFDRPYY--RHWAFGAPGYFFA-DLPFIRWLE 151

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   729 SQGYDVTYTDNMQVHTDGQRLLNHKVFLSVGHDEYWSKEIRDYVEAARNAGINIGFFSANTCYWRVRFEDSTPAAgqvqs 808
Cdd:pfam20254  152 REGYDVDYITDHDLHRGALLLGRYRAVLSGGHDEYWSLEMRDALEAARDAGGNLAFLGGNGFYWRVRLEPDRPHV----- 226

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   809 NRVMACYKqDWALDPVAQQQGSSaATNKFRSVQNQRPENALLGVMYGSDLDLYsgynFVVTNSSDPYYANTGLQDGDQLT 888
Cdd:pfam20254  227 RRTMVCYK-TWSPDPGEYPHALT-GELLWRDRGNPRPENSLLGVGYAAQGFGP----YVVTDPDHWLFAGTGLKNGDFGG 300

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   889 LLVGYEWDFIVNNGsTPANLVVLAESPVQPSGtlptfdeppgeqslpaNQDFTKSHSTRYTASSGAKVFASGTIQWAWGL 968
Cdd:pfam20254  301 GLLGYEADRVDVLG-SPPGIVVLASSPHVDYG----------------NPGGRVRADMTYYETGGGAVFSAGSIQWAGGL 363


                   ....
gi 965686100   969 DSDG 972
Cdd:pfam20254  364 AWNG 367
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 7-147 2.69e-47

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 165.52  E-value: 2.69e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100     7 NQVPSISDFTDNTSYELGMKFRSATEGQITAVRFWKAPSETGTHTGRIWSATGTLLASVTFTNETASGWQEQALSTPINI 86
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 965686100    87 QANTTYVVSVNINE-YYVATYDQLGSSITNGDLsSVADGNNGVFN-GTLGAFPNNSYRNTNYF 147
Cdd:pfam13313   81 TAGTTYVVSYHAPSgRYAATAGYFTSGVTNGPL-TAPSGGNGVYAyGAGGGFPTQSYNGSNYW 142
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 269-409 9.07e-47

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 163.98  E-value: 9.07e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   269 TQVPSISNVTDGVPYELGMKFRSTKGGQITAIRFWKASGETGTHIGKIWTATGTLLESVTFTNETASGWQQQLLETPVNI 348
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 965686100   349 QANTTYVVSVNV-NAYYVATNDELGNSIVNGDLsSVADGNNGVYN-ITPNSFPTSSYRNSNYY 409
Cdd:pfam13313   81 TAGTTYVVSYHApSGRYAATAGYFTSGVTNGPL-TAPSGGNGVYAyGAGGGFPTQSYNGSNYW 142
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 178-226 2.06e-07

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 48.70  E-value: 2.06e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 965686100   178 NPLVVQVKDSAGNPQSGVTVNFAVTsgGGSVSPASAVTNASGQASTTLT 226
Cdd:pfam02369    7 NTVTATVTDANGNPVPGATVTFSAS--GGTLSASSGTTDANGQATVTLT 53
BID_1 smart00634
Bacterial Ig-like domain (group 1);
163-252 7.68e-07

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 48.09  E-value: 7.68e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100    163 VSGDNQTGATgatlpnpLVVQVKDSAGNPQSGVTVNFAVTSGG-GSVSPASAVTNASGQASTTLTlGASPGaisfvTNTV 241
Cdd:smart00634   12 AVANGSDAIT-------LTATVTDANGNPVAGQEVTFTTPSGGaLTLSKGTATTDANGIATVTLT-STTAG-----VYTV 78

                            90
                    ....*....|.
gi 965686100    242 SATADGIGSVT 252
Cdd:smart00634   79 TASLENGSSSV 89
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 47-600 1.86e-06

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 52.08  E-value: 1.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   47 TGTHTGRIWSATGTLLAS------VTFTNETASGWQEQALSTPINIQANTTYVVSVNINEYYVATYDQLGSSITNGDLSS 120
Cdd:COG3210   807 AGTTAINVTGSGGTITINtattglTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVAT 886

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  121 VADGNNGVFNGTLGAFPNNSYRNTNYFRDINFVPVALPTITKVSGDNQTGATGATLPNPLVVQVKDSAGNPQSGVTVNFA 200
Cdd:COG3210   887 STGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDT 966

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  201 VTSGGGSVSPASAVTNASGQASTTLTLGASPGAISFVTNTVSATADGIGSVTFSATANPPGGTQTVLTTQVPSISNVTDG 280
Cdd:COG3210   967 GASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGV 1046

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  281 VPYELGMKFRSTKGGQITAIRFWKASGETGTHIGKIWTATGTLLESVTFTNETASGWQQQLLETPVNIQANTTYVVSVNV 360
Cdd:COG3210  1047 GVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTT 1126

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  361 NAYYVATNDELGNSIVNGDLSSVADGNNGVYNITPNSFPTSSYRNSNYYRDIGFVVGSTLIKVSGDNQIGTTGSTLPNPL 440
Cdd:COG3210  1127 VGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTGG 1206

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  441 VVRVVNAQNNPQSGVTVNFAITNGGGSVSPASVQTNASGEASTNLTLGPVPSGPGGVIVTATAAGIGSITFSATATPANT 520
Cdd:COG3210  1207 STTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGSTV 1286

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  521 NPIYLENLNSGTTNWKLVNRANGEIAGYASATSVNKGGSLDIKVSLAQPGQFTIDVYRLGYYGGTGGRLMASSGSLNGTT 600
Cdd:COG3210  1287 DIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGAG 1366
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 438-486 5.84e-06

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 44.85  E-value: 5.84e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 965686100   438 NPLVVRVVNAQNNPQSGVTVNFAITNGGgsVSPASVQTNASGEASTNLT 486
Cdd:pfam02369    7 NTVTATVTDANGNPVPGATVTFSASGGT--LSASSGTTDANGQATVTLT 53
BID_1 smart00634
Bacterial Ig-like domain (group 1);
430-510 4.09e-04

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 40.39  E-value: 4.09e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100    430 GTTGSTLpnplVVRVVNAQNNPQSGVTVNFAITNGG-GSVSPASVQTNASGEASTNLTlgpvPSGPGGVIVTATAAGIGS 508
Cdd:smart00634   16 GSDAITL----TATVTDANGNPVAGQEVTFTTPSGGaLTLSKGTATTDANGIATVTLT----STTAGVYTVTASLENGSS 87


                    ..
gi 965686100    509 IT 510
Cdd:smart00634   88 SV 89
PRK15314 PRK15314
outer membrane protein RatB; Provisional
 159-520 5.47e-04

outer membrane protein RatB; Provisional


Pssm-ID: 185214 [Multi-domain]  Cd Length: 2435  Bit Score: 44.06  E-value: 5.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  159 TITKVSGDNQTGATGATLPNPL--VVQVKDSAGNPQSGVTVNfaVTSGGGSVSPASAVTNASGQASTTLTLGASPGAISF 236
Cdd:PRK15314 1587 TLTLAGQDETTGSAKAKKGEQMaaTIDVKDAAGQPMKNVMVK--ISRGSSYNRANSATSSSSVTDDITLRNVMPSGLATY 1664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  237 VTNTVS----ATADGIGSVTFSATANPPGGTQTVLTTQVPSISNVTDGVpyelGMKFRSTKGGQITAIRFWKASGETGTH 312
Cdd:PRK15314 1665 LLDTSAkylyAQTDAQGQVTFTLAQDSTAGLKTTISAATMDGSNLTDSK----DAIFTVVTSPDSDKAKYWGHMPETFTN 1740

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  313 iGKIWTATGTLLESVTFTNETASGWQQqlletpvNIQANTTYVVSVNVNAYYVATNDELGNSIVNGDLSSVADGNNGVYN 392
Cdd:PRK15314 1741 -SKGVEFKRPLLRAELSSTADTSGYTE-------NNETWYTWSRYPNMYQDTASPCDRLGLPTVNDLQTLYTDYPNGALT 1812

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  393 IT-------------PNSFPTSSYRNSNYY--------------------------RDIGFVVGSTLIKVSGDNQIGTTG 433
Cdd:PRK15314 1813 TTlglpvasgkywgaGNSVPDATHSDSQFQyvrlsdnntlttkantataqlclakrRDLSIELTSSDMDADKGAPVAKKG 1892

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  434 STLpnPLVVRVVNAQNNPQSGVTVNFAITNgggSVSPASVQTNASGeastnltlgpvpsgpGGVIVTATAAGIGSITFSA 513
Cdd:PRK15314 1893 ESL--PLTVTVRDGSGTPQPNTAIRLGRTL---SIDRAGVVDGSSG---------------GGMVLTSVAPSTGSMTFNC 1952


                  ....*..
gi 965686100  514 TATPANT 520
Cdd:PRK15314 1953 TVSSCTS 1959
 
Name Accession Description Interval E-value
DUF6605 pfam20254
Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown ...
 573-972 9.93e-123

Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown function often found associated with bacterial Ig-like domains.


Pssm-ID: 466405  Cd Length: 370  Bit Score: 378.97  E-value: 9.93e-123
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   573 TIDVYRLGYYGGTGGRLMASSGslngtTQPACTLDPNTRLVECNWTTSYVVQVGNNWTSGLYVAKLTDqATSKVAHVWFV 652
Cdd:pfam20254    1 TREVYRLGWYGGKGARLVWTSA-----PLTYGAIHFHTDLVDCNWTTSFTFTVPADWRSGVYAAKLTT-ADGKQSYIPFV 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   653 VRDDSSTADVLFQSSVSTVLAYSATGGYSLY----GFNSIGGQRAFKVSYDRPVYqaTYEQSFEPDTLLRwEYNMVRWLE 728
Cdd:pfam20254   75 VRPPARRADLLVVLPTTTYQAYNNWGGYSLYdhsdGSGVAYSSRARPVSFDRPYY--RHWAFGAPGYFFA-DLPFIRWLE 151

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   729 SQGYDVTYTDNMQVHTDGQRLLNHKVFLSVGHDEYWSKEIRDYVEAARNAGINIGFFSANTCYWRVRFEDSTPAAgqvqs 808
Cdd:pfam20254  152 REGYDVDYITDHDLHRGALLLGRYRAVLSGGHDEYWSLEMRDALEAARDAGGNLAFLGGNGFYWRVRLEPDRPHV----- 226

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   809 NRVMACYKqDWALDPVAQQQGSSaATNKFRSVQNQRPENALLGVMYGSDLDLYsgynFVVTNSSDPYYANTGLQDGDQLT 888
Cdd:pfam20254  227 RRTMVCYK-TWSPDPGEYPHALT-GELLWRDRGNPRPENSLLGVGYAAQGFGP----YVVTDPDHWLFAGTGLKNGDFGG 300

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   889 LLVGYEWDFIVNNGsTPANLVVLAESPVQPSGtlptfdeppgeqslpaNQDFTKSHSTRYTASSGAKVFASGTIQWAWGL 968
Cdd:pfam20254  301 GLLGYEADRVDVLG-SPPGIVVLASSPHVDYG----------------NPGGRVRADMTYYETGGGAVFSAGSIQWAGGL 363


                   ....
gi 965686100   969 DSDG 972
Cdd:pfam20254  364 AWNG 367
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 7-147 2.69e-47

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 165.52  E-value: 2.69e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100     7 NQVPSISDFTDNTSYELGMKFRSATEGQITAVRFWKAPSETGTHTGRIWSATGTLLASVTFTNETASGWQEQALSTPINI 86
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 965686100    87 QANTTYVVSVNINE-YYVATYDQLGSSITNGDLsSVADGNNGVFN-GTLGAFPNNSYRNTNYF 147
Cdd:pfam13313   81 TAGTTYVVSYHAPSgRYAATAGYFTSGVTNGPL-TAPSGGNGVYAyGAGGGFPTQSYNGSNYW 142
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 269-409 9.07e-47

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 163.98  E-value: 9.07e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   269 TQVPSISNVTDGVPYELGMKFRSTKGGQITAIRFWKASGETGTHIGKIWTATGTLLESVTFTNETASGWQQQLLETPVNI 348
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 965686100   349 QANTTYVVSVNV-NAYYVATNDELGNSIVNGDLsSVADGNNGVYN-ITPNSFPTSSYRNSNYY 409
Cdd:pfam13313   81 TAGTTYVVSYHApSGRYAATAGYFTSGVTNGPL-TAPSGGNGVYAyGAGGGFPTQSYNGSNYW 142
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 178-226 2.06e-07

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 48.70  E-value: 2.06e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 965686100   178 NPLVVQVKDSAGNPQSGVTVNFAVTsgGGSVSPASAVTNASGQASTTLT 226
Cdd:pfam02369    7 NTVTATVTDANGNPVPGATVTFSAS--GGTLSASSGTTDANGQATVTLT 53
BID_1 smart00634
Bacterial Ig-like domain (group 1);
163-252 7.68e-07

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 48.09  E-value: 7.68e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100    163 VSGDNQTGATgatlpnpLVVQVKDSAGNPQSGVTVNFAVTSGG-GSVSPASAVTNASGQASTTLTlGASPGaisfvTNTV 241
Cdd:smart00634   12 AVANGSDAIT-------LTATVTDANGNPVAGQEVTFTTPSGGaLTLSKGTATTDANGIATVTLT-STTAG-----VYTV 78

                            90
                    ....*....|.
gi 965686100    242 SATADGIGSVT 252
Cdd:smart00634   79 TASLENGSSSV 89
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 47-600 1.86e-06

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 52.08  E-value: 1.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   47 TGTHTGRIWSATGTLLAS------VTFTNETASGWQEQALSTPINIQANTTYVVSVNINEYYVATYDQLGSSITNGDLSS 120
Cdd:COG3210   807 AGTTAINVTGSGGTITINtattglTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVAT 886

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  121 VADGNNGVFNGTLGAFPNNSYRNTNYFRDINFVPVALPTITKVSGDNQTGATGATLPNPLVVQVKDSAGNPQSGVTVNFA 200
Cdd:COG3210   887 STGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDT 966

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  201 VTSGGGSVSPASAVTNASGQASTTLTLGASPGAISFVTNTVSATADGIGSVTFSATANPPGGTQTVLTTQVPSISNVTDG 280
Cdd:COG3210   967 GASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGV 1046

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  281 VPYELGMKFRSTKGGQITAIRFWKASGETGTHIGKIWTATGTLLESVTFTNETASGWQQQLLETPVNIQANTTYVVSVNV 360
Cdd:COG3210  1047 GVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTT 1126

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  361 NAYYVATNDELGNSIVNGDLSSVADGNNGVYNITPNSFPTSSYRNSNYYRDIGFVVGSTLIKVSGDNQIGTTGSTLPNPL 440
Cdd:COG3210  1127 VGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTGG 1206

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  441 VVRVVNAQNNPQSGVTVNFAITNGGGSVSPASVQTNASGEASTNLTLGPVPSGPGGVIVTATAAGIGSITFSATATPANT 520
Cdd:COG3210  1207 STTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGSTV 1286

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  521 NPIYLENLNSGTTNWKLVNRANGEIAGYASATSVNKGGSLDIKVSLAQPGQFTIDVYRLGYYGGTGGRLMASSGSLNGTT 600
Cdd:COG3210  1287 DIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGAG 1366
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 71-560 2.05e-06

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 52.09  E-value: 2.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   71 TASGWQEQALSTPINIQANTTYVVSVNINEYYVATYDQLGSSITNGDLSSVADGNNGVFNGTLGAFPNNSYRNTNYFRDI 150
Cdd:COG4625     2 GGGGGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  151 NFVPVALPTITKVSGDNQTGATGATLPNPLVVQVKDSAGNPQSGVTVNFAVTSGGGSVSPASAVTNASGQASTTLTLGAS 230
Cdd:COG4625    82 GGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  231 PGAISFVTNTVSATADGIGSVTFSATANPPGGTQTVLTTQVPSISNVTDGVPYELGMKFRSTKGGQITAIRFWKASGETG 310
Cdd:COG4625   162 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGG 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  311 THIGKIWTATGTLLESVTFTNETASGWQQQLLETPVNIQANTTYVVSVNVNAYYVATNDELGNSIVNGDLSSVADGNNGV 390
Cdd:COG4625   242 GGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  391 YNITPNSFPTSSYRNSNYYRDIGFVVGSTLIKVSGDNQIGTTGSTLPNPLVVRVVNAQNNPQSGVTVNFAITNGGGSVSP 470
Cdd:COG4625   322 GGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGG 401

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  471 ASVQTNASGEASTNLTLGPVPSGPGGVIVTATAAGIGSITFSATATPANTNPIYLENLNSGTTNWKLVNRANGEI----- 545
Cdd:COG4625   402 GGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLtltgn 481

                         490
                  ....*....|....*
gi 965686100  546 AGYASATSVNKGGSL 560
Cdd:COG4625   482 NTYTGTTTVNGGGNY 496
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 438-486 5.84e-06

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 44.85  E-value: 5.84e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 965686100   438 NPLVVRVVNAQNNPQSGVTVNFAITNGGgsVSPASVQTNASGEASTNLT 486
Cdd:pfam02369    7 NTVTATVTDANGNPVPGATVTFSASGGT--LSASSGTTDANGQATVTLT 53
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 110-601 1.56e-05

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 49.01  E-value: 1.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  110 GSSITNGDLSSVADGNNGVFNGTLGAFPNNSYRNTNYFRDINFVPVALPTITKVSGDNQTGATGATLPNPLVVQVKDSAG 189
Cdd:COG4625     2 GGGGGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  190 NPQSGVTVNFAVTSGGGSVSPASAVTNASGQASTTLTLGASPGAISFVTNTVSATADGIGSVTFSATANPPGGTQTVLTT 269
Cdd:COG4625    82 GGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  270 QVPSISNVTDGVPYELGMKFRSTKGGQITAIrFWKASGETGTHIGKIWTATGTLLESVTFTNETASGWQQQLLETPVNIQ 349
Cdd:COG4625   162 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-NGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  350 ANTTYVVSVNVNAYYVATNDELGNSIVNGDLSSVADGNNGVYNITPNSFPTSSYRNSNYYRDIGFVVGSTLIKVSGDNQI 429
Cdd:COG4625   241 GGGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  430 GTTGSTLPNPLVVRVVNAQNNPQSGVTVNFAITNGGGSVSPASVQTNASGEASTNLTLGPVPSGPGGVIVTATAAGIGSI 509
Cdd:COG4625   321 GGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  510 TFSATATPANTNPIYLENLNSGTTNWKLVNRANGEIAGYASATSVNKGGSLDIKVSLAQPGQFTIDVyrlGYYGGTGGRL 589
Cdd:COG4625   401 GGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGG---GSGSGAGTLT 477

                         490
                  ....*....|..
gi 965686100  590 MASSGSLNGTTQ 601
Cdd:COG4625   478 LTGNNTYTGTTT 489
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 110-690 1.32e-04

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 46.30  E-value: 1.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  110 GSSITNGDLSSVADGNNGVF------------NGTLGAFPNNSYRNTNYFRDINFVPVALPTITKVSGDNQTGATGATLP 177
Cdd:COG3210   802 GTITAAGTTAINVTGSGGTItintattgltgtGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGS 881

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  178 NPLVVQVKDSAGNPQSGVTVNFAVTSGGGSVSPASAVTNASGQASTTLTLGASPGAISFVTNTVSATADGIGSVTFSATA 257
Cdd:COG3210   882 GGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASD 961

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  258 NPPGGTQTVLTTQVPSISNVTDGVPYELGMKFRSTKGGQITAIRFWKASGETGTHIGKIWTATGTLLESVTFTNETASGW 337
Cdd:COG3210   962 GAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAG 1041

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  338 QQQLLETPVNIQANTTYVVSVNVNAYYVATNDELGNSIVNGDLSSVADGNNGVYNITPNSFPTSSYRNSNYYRDIGFVVG 417
Cdd:COG3210  1042 GQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKV 1121

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  418 STLIKVSGDNQIGTTGSTLPNPLVVRVVNAQNNPQSGVTVNFAITNGGGSVSPASVQTNASGEASTNLTLGPVPSGPGGV 497
Cdd:COG3210  1122 GGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGG 1201

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  498 IVTATAAGIGSITFSATATPANTNPIYLENLNSGTTNWKLVNRANGEIAGYASATSVNKGGSLDIKVSLAQPGQFTIDVY 577
Cdd:COG3210  1202 DSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATA 1281

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  578 RLGYYGGTGGRLMASSGSLNGTTQPACTLDPNTRLVECNWTTSYVVQVGNNWTSGLYVAKLTDQATSKVAHVWFVVRDDS 657
Cdd:COG3210  1282 TGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDS 1361

                         570       580       590
                  ....*....|....*....|....*....|...
gi 965686100  658 STADVLFQSSVSTVLAYSATGGYSLYGFNSIGG 690
Cdd:COG3210  1362 AAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAE 1394
BID_1 smart00634
Bacterial Ig-like domain (group 1);
430-510 4.09e-04

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 40.39  E-value: 4.09e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100    430 GTTGSTLpnplVVRVVNAQNNPQSGVTVNFAITNGG-GSVSPASVQTNASGEASTNLTlgpvPSGPGGVIVTATAAGIGS 508
Cdd:smart00634   16 GSDAITL----TATVTDANGNPVAGQEVTFTTPSGGaLTLSKGTATTDANGIATVTLT----STTAGVYTVTASLENGSS 87


                    ..
gi 965686100    509 IT 510
Cdd:smart00634   88 SV 89
AidA COG3468
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ...
 56-505 5.35e-04

Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442691 [Multi-domain]  Cd Length: 846  Bit Score: 44.17  E-value: 5.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   56 SATGTLLASVTFTNETASGWQEQALSTPINIQANTTYVVSVNINEYYVATYDQLGSSITNGDLSSVADGNNGVFNGTLGA 135
Cdd:COG3468     1 TASGGGGGATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  136 FPNNSYRNTNYFRDINFVPVALPTITKVSGDNQTGATGATLPNPLVVQVKDSAGNPQSGVTVNFAVTSGGGSVSPASAVT 215
Cdd:COG3468    81 SGGTGGNSTGGGGGNSGTGGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  216 NASGQASTTLTLGASPGAISFVTNTVSATADGIGSVTFSATANPPGGTQTVLTTQVPSISNVTDGVPY-ELGMKFRSTKG 294
Cdd:COG3468   161 TGSGGGGSGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAgSGGNTGGGVGG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  295 GQITAIRFWKASGETGTHIGKIWTATGTLLESVTFTNETASGWQQQLLetpvNIQANTTYVVSVNVNAYYVATNDELGNS 374
Cdd:COG3468   241 GGGSAGGTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGG----GGASGTGGGGTASTGGGGGGGGGNGGGG 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  375 IVNGDLSSVADGNNGVYNITPNSFPTSSYRNSNYYRDIGFVVGSTLIKVSGDNQIGTTGSTLPNPLVVRVVNAQNNPQSG 454
Cdd:COG3468   317 GGGSNAGGGSGGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLT 396

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 965686100  455 VTVNFAITNGGGSVSPASVQTNASGeastNLTLGPVPSGPGGVIVTATAAG 505
Cdd:COG3468   397 TGGTGNNGGGGVGGGGGGGLTLTGG----TLTVNGNYTGNNGTLVLNTVLG 443
PRK15314 PRK15314
outer membrane protein RatB; Provisional
 159-520 5.47e-04

outer membrane protein RatB; Provisional


Pssm-ID: 185214 [Multi-domain]  Cd Length: 2435  Bit Score: 44.06  E-value: 5.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  159 TITKVSGDNQTGATGATLPNPL--VVQVKDSAGNPQSGVTVNfaVTSGGGSVSPASAVTNASGQASTTLTLGASPGAISF 236
Cdd:PRK15314 1587 TLTLAGQDETTGSAKAKKGEQMaaTIDVKDAAGQPMKNVMVK--ISRGSSYNRANSATSSSSVTDDITLRNVMPSGLATY 1664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  237 VTNTVS----ATADGIGSVTFSATANPPGGTQTVLTTQVPSISNVTDGVpyelGMKFRSTKGGQITAIRFWKASGETGTH 312
Cdd:PRK15314 1665 LLDTSAkylyAQTDAQGQVTFTLAQDSTAGLKTTISAATMDGSNLTDSK----DAIFTVVTSPDSDKAKYWGHMPETFTN 1740

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  313 iGKIWTATGTLLESVTFTNETASGWQQqlletpvNIQANTTYVVSVNVNAYYVATNDELGNSIVNGDLSSVADGNNGVYN 392
Cdd:PRK15314 1741 -SKGVEFKRPLLRAELSSTADTSGYTE-------NNETWYTWSRYPNMYQDTASPCDRLGLPTVNDLQTLYTDYPNGALT 1812

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  393 IT-------------PNSFPTSSYRNSNYY--------------------------RDIGFVVGSTLIKVSGDNQIGTTG 433
Cdd:PRK15314 1813 TTlglpvasgkywgaGNSVPDATHSDSQFQyvrlsdnntlttkantataqlclakrRDLSIELTSSDMDADKGAPVAKKG 1892

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  434 STLpnPLVVRVVNAQNNPQSGVTVNFAITNgggSVSPASVQTNASGeastnltlgpvpsgpGGVIVTATAAGIGSITFSA 513
Cdd:PRK15314 1893 ESL--PLTVTVRDGSGTPQPNTAIRLGRTL---SIDRAGVVDGSSG---------------GGMVLTSVAPSTGSMTFNC 1952


                  ....*..
gi 965686100  514 TATPANT 520
Cdd:PRK15314 1953 TVSSCTS 1959
PRK15316 PRK15316
RatA-like protein; Provisional
 179-315 1.77e-03

RatA-like protein; Provisional


Pssm-ID: 185216 [Multi-domain]  Cd Length: 2683  Bit Score: 42.35  E-value: 1.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100  179 PLVVQVKDSAGNPqsgvTVNFAVTSGGGSVSPASAVTNASGQASTTLTLGASPGAISFVT-----NTVSATADGIGSVTF 253
Cdd:PRK15316 2441 SVTVTVKDSAGNT----VPNVEFTLKRGEASPRNAGATLYGNVVAMDDLTVQPLSGSAVTlsesgNTISGMTGADGTASF 2516

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 965686100  254 SATANPPGGTQTVLTTQVPSISNVTDgvpyELGMKFRSTKGGQITAIRFWKASGETGTHIGK 315
Cdd:PRK15316 2517 TLRQDNTPGYKTPLTVTLANYASATD----TLDAIFTVPTSPNVSSAHFWGHMADTVVVNSK 2574
Invasin_D3 pfam09134
Invasin, domain 3; Members of this family adopt a structure consisting of an ...
 180-255 3.63e-03

Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.


Pssm-ID: 430426 [Multi-domain]  Cd Length: 98  Bit Score: 37.68  E-value: 3.63e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 965686100   180 LVVQVKDSAGNPQ--SGVTVNFAVTSGGGSvspaSAVTNASGQASTTLTLGASPGaisfvTNTVSATADGIG-----SVT 252
Cdd:pfam09134   24 LTVTLKDANGNPLtvGGATVTFSTTAGTLS----AVTDNGDGTYTATLTSGTTAG-----TATVTFTVNGVAgaataTVT 94


                   ...
gi 965686100   253 FSA 255
Cdd:pfam09134   95 FVA 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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