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Conserved domains on  [gi|9634958|ref|NP_054655|]
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ORF2 [Torque teno mini virus 9]

Protein Classification

TT_ORF2 domain-containing protein( domain architecture ID 10503046)

TT_ORF2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TT_ORF2 pfam02957
TT viral ORF2; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of ...
 9-102 2.32e-30

TT viral ORF2; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals, and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF2 is a 150 residue protein. This family also includes the VP2 protein from the chicken anaemia virus which is a gyrovirus. Gyroviruses are small circular single stranded viruses. The proteins contain a set of conserved cysteine and histidine residues suggesting a zinc binding domain.


:

Pssm-ID: 251643  Cd Length: 103  Bit Score: 103.74  E-value: 2.32e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9634958      9 YIPSKSTLRQKKLQWMNLIVHGHDIFCDCCKPLECTIGTIINQEPDLKFNTEEKNLLKKCLSTK---------DGDAGAG 79
Cdd:pfam02957   1 WRPPRYNPKGLELQWINSIVRSHDLFCGCGDPLKHLIHPILRQLPALPAAPEEPGDLAKWLTTTgedggtgprGGDGTAG 80

                          90       100
                  ....*....|....*....|...
gi 9634958     80 AADPDGFGEGDLDALFTEDFGEE 102
Cdd:pfam02957  81 DAAGEGLDEGDLDLLFAEDFAED 103
 
Name Accession Description Interval E-value
TT_ORF2 pfam02957
TT viral ORF2; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of ...
 9-102 2.32e-30

TT viral ORF2; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals, and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF2 is a 150 residue protein. This family also includes the VP2 protein from the chicken anaemia virus which is a gyrovirus. Gyroviruses are small circular single stranded viruses. The proteins contain a set of conserved cysteine and histidine residues suggesting a zinc binding domain.


Pssm-ID: 251643  Cd Length: 103  Bit Score: 103.74  E-value: 2.32e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9634958      9 YIPSKSTLRQKKLQWMNLIVHGHDIFCDCCKPLECTIGTIINQEPDLKFNTEEKNLLKKCLSTK---------DGDAGAG 79
Cdd:pfam02957   1 WRPPRYNPKGLELQWINSIVRSHDLFCGCGDPLKHLIHPILRQLPALPAAPEEPGDLAKWLTTTgedggtgprGGDGTAG 80

                          90       100
                  ....*....|....*....|...
gi 9634958     80 AADPDGFGEGDLDALFTEDFGEE 102
Cdd:pfam02957  81 DAAGEGLDEGDLDLLFAEDFAED 103
 
Name Accession Description Interval E-value
TT_ORF2 pfam02957
TT viral ORF2; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of ...
 9-102 2.32e-30

TT viral ORF2; TT virus (TTV), isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals, and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF2 is a 150 residue protein. This family also includes the VP2 protein from the chicken anaemia virus which is a gyrovirus. Gyroviruses are small circular single stranded viruses. The proteins contain a set of conserved cysteine and histidine residues suggesting a zinc binding domain.


Pssm-ID: 251643  Cd Length: 103  Bit Score: 103.74  E-value: 2.32e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9634958      9 YIPSKSTLRQKKLQWMNLIVHGHDIFCDCCKPLECTIGTIINQEPDLKFNTEEKNLLKKCLSTK---------DGDAGAG 79
Cdd:pfam02957   1 WRPPRYNPKGLELQWINSIVRSHDLFCGCGDPLKHLIHPILRQLPALPAAPEEPGDLAKWLTTTgedggtgprGGDGTAG 80

                          90       100
                  ....*....|....*....|...
gi 9634958     80 AADPDGFGEGDLDALFTEDFGEE 102
Cdd:pfam02957  81 DAAGEGLDEGDLDLLFAEDFAED 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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