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Conserved domains on  [gi|9634023|ref|NP_052097|]
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host protein H-NS-interacting protein [Yersinia phage phiYeO3-12]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA00440 PHA00440
host protein H-NS-interacting protein
1-100 7.99e-56

host protein H-NS-interacting protein


:

Pssm-ID: 133889  Cd Length: 98  Bit Score: 167.71  E-value: 7.99e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9634023     1 MAMTKHFKVTFDVTAVIDSESEKNLNELLVDLAKKAGAGEKLNPFKQELLIQGLTHGPEGAAAFCIKQGLREFIRDGHSE 80
Cdd:PHA00440   1 MAMTKKFKVSFDVTAKMDSETEAILEEDILDLAKQAGAGEEVNPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEE 80
                         90       100
                 ....*....|....*....|
gi 9634023    81 lsSTEQKLMRFSPATVREVF 100
Cdd:PHA00440  81 --STDKDLFKFSPATVREVF 98
 
Name Accession Description Interval E-value
PHA00440 PHA00440
host protein H-NS-interacting protein
1-100 7.99e-56

host protein H-NS-interacting protein


Pssm-ID: 133889  Cd Length: 98  Bit Score: 167.71  E-value: 7.99e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9634023     1 MAMTKHFKVTFDVTAVIDSESEKNLNELLVDLAKKAGAGEKLNPFKQELLIQGLTHGPEGAAAFCIKQGLREFIRDGHSE 80
Cdd:PHA00440   1 MAMTKKFKVSFDVTAKMDSETEAILEEDILDLAKQAGAGEEVNPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEE 80
                         90       100
                 ....*....|....*....|
gi 9634023    81 lsSTEQKLMRFSPATVREVF 100
Cdd:PHA00440  81 --STDKDLFKFSPATVREVF 98
Phage_T7_55 pfam11247
Bacteriophage T7, gene 5.5; This family of phage proteins include Bacteriophage T7 gene 5.5 ...
1-100 5.47e-21

Bacteriophage T7, gene 5.5; This family of phage proteins include Bacteriophage T7 gene 5.5 (also known as Protein suppressor of silencing) which plays a role in the inhibition of gene silencing by the host nucleoid-associated protein H-NS/hns. It disrupts higher-order H-NS-DNA complexes.


Pssm-ID: 314235  Cd Length: 99  Bit Score: 79.81  E-value: 5.47e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9634023      1 MAMTKHFKVTFDVTAVIDSESEKNLNELLVDLAKKAGAGEKL-NPFKQELLIQGLTHGPEGAAAFCIKQGLREFIRDGHS 79
Cdd:pfam11247   1 MAMTKKFKVSFDVTAKMSSDVQAILEKDMLHLCKQVGSGAIVpNGKQKEMIVQFLTHGMEGLMTFVVRTSFREAIKDMHE 80
                          90       100
                  ....*....|....*....|.
gi 9634023     80 ELSSTEQklMRFSPATVREVF 100
Cdd:pfam11247  81 EYADKDS--FKQSPATVREVF 99
 
Name Accession Description Interval E-value
PHA00440 PHA00440
host protein H-NS-interacting protein
1-100 7.99e-56

host protein H-NS-interacting protein


Pssm-ID: 133889  Cd Length: 98  Bit Score: 167.71  E-value: 7.99e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9634023     1 MAMTKHFKVTFDVTAVIDSESEKNLNELLVDLAKKAGAGEKLNPFKQELLIQGLTHGPEGAAAFCIKQGLREFIRDGHSE 80
Cdd:PHA00440   1 MAMTKKFKVSFDVTAKMDSETEAILEEDILDLAKQAGAGEEVNPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEE 80
                         90       100
                 ....*....|....*....|
gi 9634023    81 lsSTEQKLMRFSPATVREVF 100
Cdd:PHA00440  81 --STDKDLFKFSPATVREVF 98
Phage_T7_55 pfam11247
Bacteriophage T7, gene 5.5; This family of phage proteins include Bacteriophage T7 gene 5.5 ...
1-100 5.47e-21

Bacteriophage T7, gene 5.5; This family of phage proteins include Bacteriophage T7 gene 5.5 (also known as Protein suppressor of silencing) which plays a role in the inhibition of gene silencing by the host nucleoid-associated protein H-NS/hns. It disrupts higher-order H-NS-DNA complexes.


Pssm-ID: 314235  Cd Length: 99  Bit Score: 79.81  E-value: 5.47e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9634023      1 MAMTKHFKVTFDVTAVIDSESEKNLNELLVDLAKKAGAGEKL-NPFKQELLIQGLTHGPEGAAAFCIKQGLREFIRDGHS 79
Cdd:pfam11247   1 MAMTKKFKVSFDVTAKMSSDVQAILEKDMLHLCKQVGSGAIVpNGKQKEMIVQFLTHGMEGLMTFVVRTSFREAIKDMHE 80
                          90       100
                  ....*....|....*....|.
gi 9634023     80 ELSSTEQklMRFSPATVREVF 100
Cdd:pfam11247  81 EYADKDS--FKQSPATVREVF 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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