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Conserved domains on  [gi|961890615|ref|XP_014853307|]
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PREDICTED: beta-2-glycoprotein 1-like [Poecilia mexicana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Sushi_2 pfam09014
Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is ...
 261-348 1.26e-49

Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies.


:

Pssm-ID: 430371  Cd Length: 88  Bit Score: 161.31  E-value: 1.26e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615  261 RAPCEVGIKRGRIFYNGRKIWIEDLTPNRVLHGEHVAFYCKNKAEKCGYPVASTCNDGNLPIPDCYEQPGKIEYNLRSKN 340
Cdd:pfam09014   1 RAPCKIPVKRARVLYNGEKVWIQDLLKNGVLHGEIVSFFCKNKEKKCSYTVPAQCIDGTLKIPECFKEPTWLQYKLFPKT 80


                  ....*...
gi 961890615  341 LPSEIRMC 348
Cdd:pfam09014  81 LPSEIKPC 88
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 41-260 1.52e-21

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 92.79  E-value: 1.52e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615  41 FEIGEDVTLSCEQGYLPSTATPPRITCTATGeWTPANlACSPRMCQIPRPLQPFAKGRTEAPFKSVLNFSCDDGYVMVGA 120
Cdd:PHA02927  44 YNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WTLFN-QCIKRRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYQLIGE 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615 121 NESRCLHDGT----WSHPPPLCKGVNCPLPKPPREGRivHDkavtGTSTIYGQGW--TYECNPPKAPSYERGSCMADGSA 194
Cdd:PHA02927 122 SKSYCELGSTgsmvWNPEAPICESVKCQSPPSISNGR--HN----GYEDFYTDGSvvTYSCNSGYSLIGNSGVLCSGGEW 195

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 961890615 195 TEPPVCRDVSCSiPPRIANGVITFAVMRQRGYKEKVKYSCLEHYTLEGEAEIQCQNTGNWS-SLPVC 260
Cdd:PHA02927 196 SDPPTCQIVKCP-HPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQpELPKC 261
 
Name Accession Description Interval E-value
Sushi_2 pfam09014
Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is ...
 261-348 1.26e-49

Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies.


Pssm-ID: 430371  Cd Length: 88  Bit Score: 161.31  E-value: 1.26e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615  261 RAPCEVGIKRGRIFYNGRKIWIEDLTPNRVLHGEHVAFYCKNKAEKCGYPVASTCNDGNLPIPDCYEQPGKIEYNLRSKN 340
Cdd:pfam09014   1 RAPCKIPVKRARVLYNGEKVWIQDLLKNGVLHGEIVSFFCKNKEKKCSYTVPAQCIDGTLKIPECFKEPTWLQYKLFPKT 80


                  ....*...
gi 961890615  341 LPSEIRMC 348
Cdd:pfam09014  81 LPSEIKPC 88
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 41-260 1.52e-21

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 92.79  E-value: 1.52e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615  41 FEIGEDVTLSCEQGYLPSTATPPRITCTATGeWTPANlACSPRMCQIPRPLQPFAKGRTEAPFKSVLNFSCDDGYVMVGA 120
Cdd:PHA02927  44 YNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WTLFN-QCIKRRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYQLIGE 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615 121 NESRCLHDGT----WSHPPPLCKGVNCPLPKPPREGRivHDkavtGTSTIYGQGW--TYECNPPKAPSYERGSCMADGSA 194
Cdd:PHA02927 122 SKSYCELGSTgsmvWNPEAPICESVKCQSPPSISNGR--HN----GYEDFYTDGSvvTYSCNSGYSLIGNSGVLCSGGEW 195

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 961890615 195 TEPPVCRDVSCSiPPRIANGVITFAVMRQRGYKEKVKYSCLEHYTLEGEAEIQCQNTGNWS-SLPVC 260
Cdd:PHA02927 196 SDPPTCQIVKCP-HPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQpELPKC 261
Sushi pfam00084
Sushi repeat (SCR repeat);
85-138 1.46e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 53.27  E-value: 1.46e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 961890615   85 CQIPRPLQ--PFAKGRTEAPFKSVLNFSCDDGYVMVGANESRCLHDGTWSHPPPLC 138
Cdd:pfam00084   1 CPPPPDIPngKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 102-139 1.33e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.54  E-value: 1.33e-08
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 961890615 102 PFKSVLNFSCDDGYVMVGANESRCLHDGTWSHPPPLCK 139
Cdd:cd00033   20 SYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 205-260 4.56e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 49.06  E-value: 4.56e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 961890615   205 CSIPPRIANGVITFAVMRQRgYKEKVKYSCLEHYTLEGEAEIQCQNTGNWS-SLPVC 260
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYS-YGDTVTYSCDPGYTLIGSSTITCLENGTWSpPPPTC 56
 
Name Accession Description Interval E-value
Sushi_2 pfam09014
Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is ...
 261-348 1.26e-49

Beta-2-glycoprotein-1 fifth domain; The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies.


Pssm-ID: 430371  Cd Length: 88  Bit Score: 161.31  E-value: 1.26e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615  261 RAPCEVGIKRGRIFYNGRKIWIEDLTPNRVLHGEHVAFYCKNKAEKCGYPVASTCNDGNLPIPDCYEQPGKIEYNLRSKN 340
Cdd:pfam09014   1 RAPCKIPVKRARVLYNGEKVWIQDLLKNGVLHGEIVSFFCKNKEKKCSYTVPAQCIDGTLKIPECFKEPTWLQYKLFPKT 80


                  ....*...
gi 961890615  341 LPSEIRMC 348
Cdd:pfam09014  81 LPSEIKPC 88
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 41-260 1.52e-21

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 92.79  E-value: 1.52e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615  41 FEIGEDVTLSCEQGYLPSTATPPRITCTATGeWTPANlACSPRMCQIPRPLQPFAKGRTEAPFKSVLNFSCDDGYVMVGA 120
Cdd:PHA02927  44 YNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WTLFN-QCIKRRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYQLIGE 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615 121 NESRCLHDGT----WSHPPPLCKGVNCPLPKPPREGRivHDkavtGTSTIYGQGW--TYECNPPKAPSYERGSCMADGSA 194
Cdd:PHA02927 122 SKSYCELGSTgsmvWNPEAPICESVKCQSPPSISNGR--HN----GYEDFYTDGSvvTYSCNSGYSLIGNSGVLCSGGEW 195

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 961890615 195 TEPPVCRDVSCSiPPRIANGVITFAVMRQRGYKEKVKYSCLEHYTLEGEAEIQCQNTGNWS-SLPVC 260
Cdd:PHA02927 196 SDPPTCQIVKCP-HPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQpELPKC 261
PHA02639 PHA02639
EEV host range protein; Provisional
 106-260 1.81e-10

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 61.22  E-value: 1.81e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615 106 VLNFSCDDGYVMVGANESRCLHD---GTWSHPPPLCKGVNCPLPKPPREGRIVHDKAVTGTstiyGQGWTYECNPPKAPS 182
Cdd:PHA02639  45 LIEYTCNTDYALIGDRFRTCIKDknnAIWSNKAPFCMLKECNDPPSIINGKIYNKREMYKV----GDEIYYVCNEHKGVQ 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615 183 Y-----ERGSCMADGS-ATEPPVCRDVSCSIPPrIANGVIT-FAVMRQRGYKEKVKYSCLEHYTLEGEAEIQCQNTGNW- 254
Cdd:PHA02639 121 YslvgnEKITCIQDKSwKPDPPICKMINCRFPA-LQNGYINgIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWf 199


                 ....*.
gi 961890615 255 SSLPVC 260
Cdd:PHA02639 200 PSIPTC 205
Sushi pfam00084
Sushi repeat (SCR repeat);
85-138 1.46e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 53.27  E-value: 1.46e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 961890615   85 CQIPRPLQ--PFAKGRTEAPFKSVLNFSCDDGYVMVGANESRCLHDGTWSHPPPLC 138
Cdd:pfam00084   1 CPPPPDIPngKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
205-260 9.68e-09

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 50.96  E-value: 9.68e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 961890615  205 CSIPPRIANGVITFAvMRQRGYKEKVKYSCLEHYTLEGEAEIQCQNTGNWSSL-PVC 260
Cdd:pfam00084   1 CPPPPDIPNGKVSAT-KNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPfPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 102-139 1.33e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.54  E-value: 1.33e-08
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 961890615 102 PFKSVLNFSCDDGYVMVGANESRCLHDGTWSHPPPLCK 139
Cdd:cd00033   20 SYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 205-261 1.42e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.54  E-value: 1.42e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 961890615 205 CSIPPRIANGVITFaVMRQRGYKEKVKYSCLEHYTLEGEAEIQCQNTGNWS-SLPVCR 261
Cdd:cd00033    1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSpPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 205-260 4.56e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 49.06  E-value: 4.56e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 961890615   205 CSIPPRIANGVITFAVMRQRgYKEKVKYSCLEHYTLEGEAEIQCQNTGNWS-SLPVC 260
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYS-YGDTVTYSCDPGYTLIGSSTITCLENGTWSpPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 102-138 6.76e-08

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 48.68  E-value: 6.76e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 961890615   102 PFKSVLNFSCDDGYVMVGANESRCLHDGTWSHPPPLC 138
Cdd:smart00032  20 SYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 13-138 3.27e-07

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 50.71  E-value: 3.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615  13 VFTTVAPAKVCGRPRVSDGvDVSSMKRVFEIGEDVTLSC---EQGYLPSTATPPRITCTATGEWTPANLACSPRMCQIPR 89
Cdd:PHA02817  15 VYSLCDLNKCCYPPSIKNG-YIYNKKTEYNIGSNVTFFCgnnTRGVRYTLVGEKNIICEKDGKWNKEFPVCKIIRCRFPA 93

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 961890615  90 PLQPFAKGRTEAP---FKSVLNFSCDDGYVMVGANESRCLHDGTWSHPPPLC 138
Cdd:PHA02817  94 LQNGFVNGIPDSKkfyYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPIC 145
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 23-80 2.65e-06

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 44.38  E-value: 2.65e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 961890615  23 CGRPRVSDGVDVSSMKRVFEIGEDVTLSCEQGYLPStaTPPRITCTATGEWTPANLAC 80
Cdd:cd00033    1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLV--GSSTITCTENGGWSPPPPTC 56
PHA02639 PHA02639
EEV host range protein; Provisional
 21-138 1.71e-05

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 45.81  E-value: 1.71e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615  21 KVCGRPRVSDGVDVSSMKRVFEIGEDVTLSCEQ--GYLPSTATPPRITCTATGEWTPANLACSPRMCQIPRPLQPFAKG- 97
Cdd:PHA02639  83 KECNDPPSIINGKIYNKREMYKVGDEIYYVCNEhkGVQYSLVGNEKITCIQDKSWKPDPPICKMINCRFPALQNGYINGi 162

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 961890615  98 --RTEAPFKSVLNFSCDDGYVMVGANESRCLHDGTWSHPPPLC 138
Cdd:PHA02639 163 psNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWFPSIPTC 205
Sushi pfam00084
Sushi repeat (SCR repeat);
23-80 1.92e-05

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 41.72  E-value: 1.92e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 961890615   23 CGRPRVSDGVDVSSMKRVFEIGEDVTLSCEQGYlpSTATPPRITCTATGEWTPANLAC 80
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGY--RLVGSPTITCQEDGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 23-80 2.41e-05

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 41.36  E-value: 2.41e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 961890615    23 CGRPRVSDGVDVSSMKRVFEIGEDVTLSCEQGYLPStaTPPRITCTATGEWTPANLAC 80
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLI--GSSTITCLENGTWSPPPPTC 56
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 15-142 5.17e-04

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 41.61  E-value: 5.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961890615  15 TTVAPAKVCGRPRVSDGvDVSSMKRVFEIGEDVTLSCEQGYLPSTATppRITCTATgEWTPanLACSPRMCQIPRPLQPF 94
Cdd:PHA02954 122 TVTCPNAECQPLQLEHG-SCQPVKEKYSFGEHITINCDVGYEVIGAS--YISCTAN-SWNV--IPSCQQKCDIPSLSNGL 195

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 961890615  95 AKGRTEApFKSVLNFSCDDGYVMVGANESRCLhDGTWSHPPPLCKGVN 142
Cdd:PHA02954 196 ISGSTFS-IGGVIHLSCKSGFTLTGSPSSTCI-DGKWNPVLPICVRSN 241
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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