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Conserved domains on  [gi|961594301|gb|ALS88117|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Eurillas latirostris]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.41e-157

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 445.04  E-value: 1.41e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   1 MNPQAKLVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTWMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 161 STALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILDTIKAPKLSTLMTTWTKMPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATVLSLLSLLGLFFYLRLAYCATITLPPHTSNHMKQWHTSKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 961594301 321 TSTLIAILTVMSTALLPISPLISSIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.41e-157

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 445.04  E-value: 1.41e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   1 MNPQAKLVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTWMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 161 STALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILDTIKAPKLSTLMTTWTKMPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATVLSLLSLLGLFFYLRLAYCATITLPPHTSNHMKQWHTSKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 961594301 321 TSTLIAILTVMSTALLPISPLISSIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-281 3.85e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.98  E-value: 3.85e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   7 LVFATsllLGTTMTISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQAAASALILF-SSMTNAWhTGQW 84
Cdd:COG1007  108 LLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  85 DITQLTHPMS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMK----FPPITLLLMTSHS 148
Cdd:COG1007  184 NLAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 149 LNP---TLLTWMAILSTALGGWMGLNQTQVRKILAFSSISHLGWM-IAVLTYNPE-LTLLNFY--IYIPMTAAVFLILDT 221
Cdd:COG1007  264 LAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYllAYLFMNLGAFAVILL 343

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 961594301 222 IK-----APKLSTLMTTWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATV 281
Cdd:COG1007  344 LSrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.98e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.55  E-value: 1.98e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   23 SNHWITAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   91 HPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STMMKFPPITLLLMTS--HSLNPTLLTWMAILSTA---L 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLlyLPSSPFIQQILLILAIIsmlL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  165 GGWMGLNQTQVRKILAFSSISHLGWMIAVL----TYNPELTLLNFYIYIPMTAAVFL-----ILDTIKAPKLSTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 961594301  236 KMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 1.00e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.40  E-value: 1.00e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   14 LLGTTMTISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   93 MSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMK---FPPITLLLMTS----HSLNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  154 LTWMAILSTALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLN--FY--IYIPMTAAVFLILDTIKAPK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 961594301  227 ---LSTLMTTWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGM 275
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.41e-157

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 445.04  E-value: 1.41e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   1 MNPQAKLVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTWMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 161 STALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILDTIKAPKLSTLMTTWTKMPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATVLSLLSLLGLFFYLRLAYCATITLPPHTSNHMKQWHTSKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 961594301 321 TSTLIAILTVMSTALLPISPLISSIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 2.29e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 378.49  E-value: 2.29e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   1 MNPQAKLVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTWMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 161 STALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILDTIKAPKLSTLMTTWTKMPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATVLSLLSLLGLFFYLRLAYCATITLPPHTSNHMKQWHTSKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*
gi 961594301 321 TSTLIAILTVMSTALLPISPLISSI 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 7.02e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 377.61  E-value: 7.02e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   1 MNPQAKLVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSlNPTLLTWMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 161 STALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILDTIKAPKLSTLMTTWTKMPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATVLSLLSLLGLFFYLRLAYCATITLPPHTSNHMKQWHTSKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 961594301 321 TSTL-IAILTVMSTALLPISPLISSIT 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 3.26e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 332.58  E-value: 3.26e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   1 MNPQAKLVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTWMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 161 STALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILDTIKAPKLSTLMTTWTKMPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATVLSLLSLLGLFFYLRLAYCATITLPPHTSNHMKQWH-TSK 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQfENT 320

                        330       340
                 ....*....|....*....|....*..
gi 961594301 320 PTSTLIAILTVMSTALLPISPLISSIT 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 7.84e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 285.71  E-value: 7.84e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   1 MNPQAKLVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTWMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 161 STALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILDTIKAPKLSTLMTTWTKMPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATVLSLLSLLGLFFYLRLAYCATITLPPHTSNHMKQWHTSKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 961594301 321 TSTLIAILTVMSTALLPISPLISSIT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-345 7.65e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 247.54  E-value: 7.65e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   1 MNPQAKLVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTWMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 161 STALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILDTIKAPKLSTLMTTWTKMPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATVLSLLSLLGLFFYLRLAYCATITLPPHTSNHMKQWHTSKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330       340
                 ....*....|....*....|....*....
gi 961594301 321 TSTLIAILTVMST----ALLPISPLISSI 345
Cdd:MTH00041 321 ITVYGVILSILSSisilGLLLIPLFLSFL 349
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 3.44e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 175.78  E-value: 3.44e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   1 MNPQAKLVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  81 tgqwdITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLlmtSHSLNPTLLTWMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 161 STALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILDTIKAPKLSTLMTTWTKMPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATVLSLLSLLGLFFYLRLAYCATITLppHTSNHMKQWHTSKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLN--YNKNKWNLKKKKNK 310

                        330       340
                 ....*....|....*....|....*
gi 961594301 321 TSTLIAILTVMSTALLPISPLISSI 345
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-277 6.91e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 156.20  E-value: 6.91e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   5 AKLVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  85 DITqlthpmscLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNP-TLLTWMAILSTA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 164 LGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILdtIKAPKLSTLMTTWTKMPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL--WSGDSGSMKDLGSLKPSYKTGL 234

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 961594301 244 LLLTLLSLAG-LPPLTGFLPKWLIIQELTKQGMAL 277
Cdd:MTH00144 235 SIISLLLSLGgLPPFLGFCSKLLVLISSMESSPLL 269
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 8.16e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 148.39  E-value: 8.16e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   7 LVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSmtnawhTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  87 TQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLLTWMAILSTALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 167 WMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILDTIKAPKLSTLMTTWTKMPSLNAMLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 247 TLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATVLSLLSLLGLFFYLRLAYcATITLPPHTSNhmkqwHTSKPTSTLIA 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316

                        330
                 ....*....|....
gi 961594301 327 ILTVMSTALLPISP 340
Cdd:MTH00011 317 ILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-277 4.33e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 138.27  E-value: 4.33e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   8 VFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  88 qLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHslNPTLLTWMAILSTALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 168 MGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIPMTAAVFLILDTIKAPKLSTlMTTWTKMPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260       270
                 ....*....|....*....|....*....|.
gi 961594301 248 LLSLAG-LPPLTGFLPKWLIIQELTKQGMAL 277
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISL 262
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-281 3.85e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.98  E-value: 3.85e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   7 LVFATsllLGTTMTISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQAAASALILF-SSMTNAWhTGQW 84
Cdd:COG1007  108 LLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  85 DITQLTHPMS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMK----FPPITLLLMTSHS 148
Cdd:COG1007  184 NLAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 149 LNP---TLLTWMAILSTALGGWMGLNQTQVRKILAFSSISHLGWM-IAVLTYNPE-LTLLNFY--IYIPMTAAVFLILDT 221
Cdd:COG1007  264 LAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYllAYLFMNLGAFAVILL 343

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 961594301 222 IK-----APKLSTLMTTWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATV 281
Cdd:COG1007  344 LSrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-279 3.06e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 107.04  E-value: 3.06e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  13 LLLGTTMTISSNHWITAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLTQAAASALILFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  79 WHTGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLmtSHSLNPTLLTWMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 159 ILSTALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNP----ELTLLNFYIYIPMTAAVFLILDTIKAPK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 961594301 233 TWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTA 279
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIF 286
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.98e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.55  E-value: 1.98e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   23 SNHWITAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   91 HPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STMMKFPPITLLLMTS--HSLNPTLLTWMAILSTA---L 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLlyLPSSPFIQQILLILAIIsmlL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  165 GGWMGLNQTQVRKILAFSSISHLGWMIAVL----TYNPELTLLNFYIYIPMTAAVFL-----ILDTIKAPKLSTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 961594301  236 KMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 1.72e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 97.78  E-value: 1.72e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  13 LLLGTTMTISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQWDI----T 87
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  88 QLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPTLltWMAILSTALGGW 167
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVL--ICAVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 168 MGLNQTQVRKILAFSSISHLGWMIAVLTYNP----ELTLLNFYIYIPMTAAVFLILDTIKAPK--LSTLMTTWTKMPSLN 241
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIA 343

                        250       260
                 ....*....|....*....|....*.
gi 961594301 242 AMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-275 5.92e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 96.43  E-value: 5.92e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  14 LLGTTMTISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQAAASALIL--------------FSSMTNA 78
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  79 WHTGQWDITQLThpMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMK---FPPIT-LLLMTSHSLNPT-- 152
Cdd:PRK05777 193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwq 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 153 -LLTWMAILSTALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTL--LNFY--IYIPMTAAVFLIL-----DTI 222
Cdd:PRK05777 271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFGVIsllrrKGG 350

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 961594301 223 KAPKLSTLMTTWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGM 275
Cdd:PRK05777 351 EAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGL 403
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 1.00e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.40  E-value: 1.00e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   14 LLGTTMTISSNHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   93 MSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMK---FPPITLLLMTS----HSLNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  154 LTWMAILSTALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLN--FY--IYIPMTAAVFLILDTIKAPK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 961594301  227 ---LSTLMTTWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGM 275
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-281 8.43e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 83.66  E-value: 8.43e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  13 LLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQWDITQLTHP 92
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  93 MS----------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNP--------TLL 154
Cdd:COG0651  196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGadpalflgTLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 155 TWMAILSTALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIP----MTAAVFLILDTI----KAPK 226
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLAAGAIeratGTRD 355

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 961594301 227 LSTLMTTWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATV 281
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAV 410
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-191 1.52e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 80.67  E-value: 1.52e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  15 LGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAI---------EAATKYFLTQAAASALILFSSMTNAWHTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  84 ------------WDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFppITLLLMTSHSLNP 151
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 961594301 152 TLLTWMAILSTALGGWMGLNQTQVRKILAFSSISHLGWMI 191
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-208 6.77e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 69.26  E-value: 6.77e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   7 LVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHP-RAIEAATKYFLTQAAASALIL--FSSM--TNAWHT 81
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  82 GQWDI------TQLTHPMSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNP 151
Cdd:CHL00049 194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFY 273

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 961594301 152 T-------LLTWMAILSTALGGWMGLNQTQVRKILAFSSISHLGW-MIAVLTYNPE------LTLLNFYIY 208
Cdd:CHL00049 274 FssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYvIIGIIVGDSNdgyasmITYMLFYIF 344
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-199 5.99e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.18  E-value: 5.99e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  49 HPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQW--DITQLTH-----PMSCLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 119 LQGSPLTTGLLLS-TMMKFP-------PITLLLMTSHSLNPTLLTWmAILSTALGGWMGLNQTQVRKILAFSSISHLGWM 190
Cdd:COG1008  236 HVEAPTAGSVLLAgVLLKMGgygllrfALPLFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314

                        170
                 ....*....|
gi 961594301 191 -IAVLTYNPE 199
Cdd:COG1008  315 lLGIFALNPL 324
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-191 6.19e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.15  E-value: 6.19e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  50 PRAIEAATKYFLTQAAASALILF-SSMTNAWHTGQwdiTQLTHPMSCLI-------------LTSAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 116 PEVLQGSPLTTGLLLSTMMK---FPPITLLLMTSHSLNPT----LLTWMAILSTALGGWMGLNQTQVRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....
gi 961594301 189 W-MI 191
Cdd:PRK02504 314 FvMI 317
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-279 1.69e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 61.94  E-value: 1.69e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   2 NPQAKLVFATSLLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHpRAIEAATKYFLTQAAASALILFSSMTNAWHT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  82 GQWDITQLTHPMS-----------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLS-------------TMMKFP 137
Cdd:PRK08668 175 GTFDFADISQGLIndtstgfalivFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgaygfllVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 138 PITLLL----MTSHSLNPTLLTWMAILSTALGGWMGLNQTQVRKILAFSSISHLGW-MIAVLTYNP---ELTLLNFYIYI 209
Cdd:PRK08668 255 GTKLFSefgtYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYiLVGLGLGTSlgfAGGLFHVFNHA 334

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 961594301 210 PMTAAVFLILDTI----KAPKLSTLMTTWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTA 279
Cdd:PRK08668 335 LFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 3.72e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.88  E-value: 3.72e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  33 LEINTLAVLPLIS-KSHHPRAIEAATKYFLTQAAASALILFS---------SMTNAWHTGQWDITQLTHPMSCL-ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 102 IAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTMMKFPPITLLLMT--SHSLNPTLLTW----MAILSTALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSiyGPAINLATVGWviiiLGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 174 QVRKILAFSSISHLGWM-----IAVLTYNPelTLLNFYIYIPMTAAVFLILDTIKAPKLSTLMT--------TWT----- 235
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgVGLAALGD--PAMASYGEIALAGGIYHIVNHALYKALLFLTAgaviyetgTRNlnelg 387

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 961594301 236 ----KMPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 388 glarTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 1.88e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 58.80  E-value: 1.88e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   50 PRAIEAATKYFLTQAAASALILFSSMTNAW-HTGQWDITQL-THPMSC-------LILTSAIAMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  119 ---LQGSPLTTGLLLST----MMKFPpITLLLMTSHSLNPtLLTWMAILSTALGGWMGLNQTQVRKILAFSSISHLGWM- 190
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRFN-LPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVl 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  191 IAVLTYNPE------LTLLNFYIYipmTAAVFLIL----DTIKAPKLSTLMTTWTKMPSLNAMLLLTLLSLAGLPPLTGF 260
Cdd:TIGR01972 310 LGIFSFNELgisgavFQMISHGLI---TAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGF 386


                  ....*...
gi 961594301  261 LPKWLIIQ 268
Cdd:TIGR01972 387 VGEFLILL 394
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-191 6.34e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 50.97  E-value: 6.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  50 PRAIEAATKYFLTQAAASALILFSSMTNAWH----TGQWDITQL-THPMSC-------LILTSAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 118 VLQ-----GSPLTTGLLLST----MMKFPpITLLLMTSHSLNPtLLTWMAILSTALGGWMGLNQTQVRKILAFSSISHLG 188
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMgaygLLRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314


                 ...
gi 961594301 189 WMI 191
Cdd:PRK05846 315 FVT 317
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-281 1.20e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 49.88  E-value: 1.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  33 LEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFS-SMTNAwHTGQWDITQLTH--PMSCLILT------SAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 104 MKLGLVPFHFWFPEVLQG-SPLTTGLLLSTMMKFPPITLLLMTSHSLNP---------TLLTWMAILSTALGGWMGLNQT 173
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 174 QVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIP----MTAAVFL----ILDTIKAPKLSTLMTTWTKMPSLNAMLL 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalMKGALFLaagaIEVTYGTRRLSELSGLGRRMPLTAAAFA 373

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 961594301 246 LTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATV 281
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAV 409
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-191 1.84e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.37  E-value: 1.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  13 LLLGTTMTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAA------SALILFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  87 TQLTHP----------MSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMTSHSLNPT---- 152
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 961594301 153 ----LLTWMAILSTALGGWMGLNQTQVRKILAFSSISHLGWMI 191
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLML 313
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 9-190 3.06e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.77  E-value: 3.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301   9 FATSLLLgttmTISSNHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSM---TNAWhtgqwd 85
Cdd:PRK06458 117 FLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA------ 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  86 iTQLTHPMSCLILTSAIAM----------------------KLGLVPFHFWFPEVLQGSP-----LTTGLLLST----MM 134
Cdd:PRK06458 187 -TVMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNValyaVL 265

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 961594301 135 KFPPITLLLMTSHSLNPtLLTWMAILSTALGGWMGLNQTQVRKILAFSSISHLGWM 190
Cdd:PRK06458 266 RYYILIDAAIGSDFPGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 9.96e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 42.24  E-value: 9.96e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 961594301  295 RLAYCATITLPPHTSNHMKQWHTSKP-TSTLIAILTVMSTALLPISP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 1.21e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 47.22  E-value: 1.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 109 VPFHFWFPEVLQG-SPLTTGLLLSTMMKfPPITLLLMTSHSLNPTLLtWMAILSTA------LGGWMGLNQTQVRKILAF 181
Cdd:PRK12647 212 FPFHFWLPNAMEApTPVSAYLHSATMVK-AGIYLLARLNPVLGGTPL-WQTILPLFggltmlTGALLAVRQTDLKLILAY 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 182 SSISHLGWMIAVLTYNPELTLLNFYIYIPM----TAAVFLILDTIK----APKLSTLMTTWTKMPSLNAMLLLTLLSLAG 253
Cdd:PRK12647 290 STVSALGTLVMLLGLGSELAIKAAVLFLVAhslyKGALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALSMAG 369

                        170
                 ....*....|...
gi 961594301 254 LPPLTGFLPKWLI 266
Cdd:PRK12647 370 LPPLFGFLAKELI 382
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 34-188 2.00e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 46.18  E-value: 2.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  34 EINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQ--WDITQLTH---PMSCLILTS-----AIA 103
Cdd:PRK12561 117 ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFG 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 104 MKLGLVPFHFWFPEV-----LQGSPLTTGLLLStMMKFPPITL---LLMTSHSLNPTLLTWMAILSTALGGWMGLNQTQV 175
Cdd:PRK12561 197 VKLPIFPLHTWLPDAhgeasAPVSMILAGVLLK-MGGYALIRFnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNV 275

                        170
                 ....*....|...
gi 961594301 176 RKILAFSSISHLG 188
Cdd:PRK12561 276 KRRLAYSSVSHMG 288
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-194 3.50e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.53  E-value: 3.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  48 HHPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQWDITQLTH------------PMSCLILTSAIAmKLGLVPFHFWF 115
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilssplltLILLLLLLGAFG-KSAQFPLHFWL 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 116 PEVLQGsPLTTGLLL--STMMK---FppitlLLMTSH---SLNPTLLTWMAI--LSTAL-GGWMGLNQTQVRKILAFSSI 184
Cdd:COG1009  235 PDAMEG-PTPVSALLhaATMVKagvY-----LLARLSplfALSPVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTV 308

                        170
                 ....*....|
gi 961594301 185 SHLGWMIAVL 194
Cdd:COG1009  309 SQLGYMFLAL 318
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 3.98e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.33  E-value: 3.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  92 PMSCLILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTMMK-------FPPITLLLMTSHSLNPTLLTWMAILSTAL 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 165 GGWMGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLN--FYIYIPMT--AAVFLILDTIKA----PKLSTLMTTWTK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVRltgyRSLQYLGGLYRK 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 961594301 237 MPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 48-336 5.89e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 44.58  E-value: 5.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  48 HHPRAIEAATKYFLTQAAASALILFS--SMTNAWHT-----------GQWdITQLTHPMSCLILTSAIAM---------K 105
Cdd:PRK12667 158 DRGDAVEAAIKYALIGAVGTTLYFLAlaFLYATFGTlnmadlsakirGLS-FPLTGGLAGNPPLALGVALalalwaftiK 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 106 LGLVPFHFWFPEVLQGSPLTTGLLLS---------TMMKFppITLLLMTSHSLNPTLLTWMAIL------STALGGWMGL 170
Cdd:PRK12667 237 AAIFPNHFWLPDAHPAAPSPVSAMLSglvvnvgayAIIRF--LYTIFGISPSLIDFRAALSPILiilgavSAIIGALMMV 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 171 NQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIP----------MTAAVFLilDTIKAPKLSTLMTTWTKMPSL 240
Cdd:PRK12667 315 VQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVFI--HAAGTRDIDELAGLGRKMPIA 392

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMALTATVLSLLSLLGLFFYLRLAYCATITLPPHTSNHMKqwhtsKP 320
Cdd:PRK12667 393 SFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEH-----KE 467

                        330
                 ....*....|....*.
gi 961594301 321 TSTLIAILTVMSTALL 336
Cdd:PRK12667 468 SPSMSVVILVLALAVL 483
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-191 6.50e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 44.69  E-value: 6.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  55 AATKYFLTQAAASALILFSSMTNAWHTG--QWDITQL---THPMSCLILTSA-----IAMKLGLVPFHFWFPE--VLQGS 122
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDahVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 961594301 123 P---LTTGLLLST----MMKFPpITLLLMTSHSLNPTLLTWmAILSTALGGWMGLNQTQVRKILAFSSISHLGWMI 191
Cdd:PRK06473 238 PvsvLLAGVLLKLgtygLLRFG-VGLFPEAWVYLAPWLATW-AVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYIL 311
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 1.67e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 43.37  E-value: 1.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLM------TSHSLNPTLLTwMAILSTALGGWMG 169
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARlapgfaDVPVWRPTVLV-LGLATMLLGGWRA 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 170 LNQTQVRKILAFSSISHLGWMIAVLTY-NPELTLLNfyiyIPMT-------AAVFLILDTIKAP-------KLSTLmttW 234
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAG----LAMLlahalfkAALFLVVGIIDHStgtrdirKLSGL---G 358

                        170       180
                 ....*....|....*....|....*....
gi 961594301 235 TKMPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 359 RRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 2.69e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.78  E-value: 2.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  55 AATKYFLTQAAASALILFSSMTNAWHTGQWD------ITQLTHPMSCLILTSAI----AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 124 LTTGLLLSTMMKFPPITLLLM-------TSHSLNPTLLTWMAIlSTALGGWMGLNQTQVRKILAFSSISHLGWMIAVLTY 196
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 197 NPELTLL----NFYIYIPMTAAVFLILDTIKAP-------KLSTLMTTWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK07363 317 GTQLSLLgavaQMISHGLILALLFHLVGIVERKvgtrdldVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFI 396


                 ...
gi 961594301 266 IIQ 268
Cdd:PRK07363 397 VFQ 399
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 2.74e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.41  E-value: 2.74e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  33 LEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFS-----SMTNAWHTGqwDITQLTHPM--------SCLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDLptnraiqiGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 100 SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTMMKFPPITL------------LLMTSHSLNPTLLTwMAILSTALGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFNNVFMI-LAALAIVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 168 MGLNQTQVRKILAFSSISHLGWMIAVLTYNPELTLLNFYIYIP----MTAAVFLILDTIK----APKLSTLMTTWTKMPS 239
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                        250       260
                 ....*....|....*....|....*...
gi 961594301 240 LNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-275 3.01e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 42.33  E-value: 3.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  34 EINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQWDITQ-----LTHPMSCLILTSAIAMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 109 V------PFHFWFPEVLQGSPLTTGLLLSTMMKFPPITLLLMT-----SHSLNP---TLLTWMAILSTALGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgGLSYFPsaqGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 175 VRKILAFSSISHLGWMIAVLTYNPELTL-------LNFYIYipmTAAVFL----ILDTIKAPKLSTLMTTWTKMPSLNAM 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFM 366

                        250       260       270
                 ....*....|....*....|....*....|..
gi 961594301 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQGM 275
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANM 398
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-267 3.46e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.22  E-value: 3.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 101 AIAMKLGLVPFHFWFPEV-----LQGSPLTTGLLLS------TMMKFPpitLLLMTSHSLNPTLLTwMAILSTALGGWMG 169
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKlggyglVRLSWP---ILPLGAQNLAPAVIA-MGIVGIVYGSFAT 314

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 170 LNQTQVRKILAFSSISHLGwMIAVLTYNPELTLLNFYIYIPM----TAAVFLILDTIKAPKLSTLMTTWTK-----MPSL 240
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLahgiVSSLLFILVTILYDRHHTRLIKYYRglsitMPIW 393

                        170       180
                 ....*....|....*....|....*..
gi 961594301 241 NAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226 394 GTIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK12650 PRK12650
DUF4040 family protein;
80-194 1.20e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.80  E-value: 1.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  80 HTGQW-DITQLTHPMSCLILTSAIAmKLGLVPFHFWFPEVLQG-SPLTTGLLLSTMMKfPPITLLLMTSHSL-NPTLLTW 156
Cdd:PRK12650 196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVK-AGIYLLLRFSPVFhDVAVWNW 273

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 961594301 157 MAI---LSTAL-GGWMGLNQTQVRKILAFSSISHLGWMIAVL 194
Cdd:PRK12650 274 LLIivgMITALmGAVFAVQKTDLKKLTAYSTVSQLGWIVATI 315
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-192 1.73e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.94  E-value: 1.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  33 LEINTLAVLPLISKSHHPRAIEAATKYFLTQAAASALILFSSMTNAWHTGQWDITQLTH--PMSCLILTSAIAMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301 111 FHFWFPEVLQGSPLTTGLLLSTMMK----FPPITLLLMTSHSLNPtlLTWMAILSTALGGWMGLNQTQVRKILAFSSISH 186
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280


                 ....*.
gi 961594301 187 LGWMIA 192
Cdd:PRK07234 281 LGFILA 286
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 2.30e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 39.71  E-value: 2.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  55 AATKYFLTQAAASALILFSSMTNAWHTGQWDITQLTHP-----MSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLL 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 961594301 130 LSTMM-KFPPITLLLMTSHSLNPTLLTWMAIL-----STALGGWMGLNQTQVRKILAFSSISHLG 188
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-191 3.34e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 39.18  E-value: 3.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961594301  96 LILTSAIAMKLGLVPFHFWFPEVLQGSP-LTTGLLLSTMMKFPPITL-----LLMTSHSLNpTLLTWMAILSTALGGWMG 169
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPaPVTAVFAGLLTKVGVYAIirthtLLFPGGGLD-TLLMVVALLTMVVGILGA 291

                         90       100
                 ....*....|....*....|..
gi 961594301 170 LNQTQVRKILAFSSISHLGWMI 191
Cdd:PRK12665 292 IAQSDIKRLLSFTLVSHIGYMV 313
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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