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Conserved domains on  [gi|95932756|gb|ABF57699|]
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major capsid protein, partial [Enterobacteria phage MV13]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Gp23 super family cl22495
Major capsid protein Gp23; This family contains a number of major capsid Gp23 proteins ...
6-154 2.10e-97

Major capsid protein Gp23; This family contains a number of major capsid Gp23 proteins approximately 500 residues long, from T4-like bacteriophages.


The actual alignment was detected with superfamily member PHA02541:

Pssm-ID: 419842  Cd Length: 518  Bit Score: 289.79  E-value: 2.10e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 95932756    6 AGNFVIASRNVVNILASADQGISLAMQGAAKGLNTDTTKAVFAGVLAGKYKVFIDQYARQDYFTVGYKGDNEMDAGIYYA 85
Cdd:PHA02541 370 AGNFIIASRNVVSALAMADTGISPAAQGLAGGLNVDTTKSVFAGVLGGKYKVYIDQYARQDYFTVGYKGSNEMDAGIYYC 449
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 95932756   86 PYVALTPLRATDPQSFHPVLGFKTRYGIGINPFADSKSQAPSARITSGMLSKDSVGKNAYFRRVWVKGC 154
Cdd:PHA02541 450 PYVALTPLRGSDPKNFQPVMGFKTRYGIGINPFADSTTQAPGARITSGMPSINSVGKNAYFRRVWVKGL 518
 
Name Accession Description Interval E-value
23 PHA02541
major capsid protein; Provisional
6-154 2.10e-97

major capsid protein; Provisional


Pssm-ID: 177376  Cd Length: 518  Bit Score: 289.79  E-value: 2.10e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 95932756    6 AGNFVIASRNVVNILASADQGISLAMQGAAKGLNTDTTKAVFAGVLAGKYKVFIDQYARQDYFTVGYKGDNEMDAGIYYA 85
Cdd:PHA02541 370 AGNFIIASRNVVSALAMADTGISPAAQGLAGGLNVDTTKSVFAGVLGGKYKVYIDQYARQDYFTVGYKGSNEMDAGIYYC 449
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 95932756   86 PYVALTPLRATDPQSFHPVLGFKTRYGIGINPFADSKSQAPSARITSGMLSKDSVGKNAYFRRVWVKGC 154
Cdd:PHA02541 450 PYVALTPLRGSDPKNFQPVMGFKTRYGIGINPFADSTTQAPGARITSGMPSINSVGKNAYFRRVWVKGL 518
Gp23 pfam07068
Major capsid protein Gp23; This family contains a number of major capsid Gp23 proteins ...
7-134 3.40e-68

Major capsid protein Gp23; This family contains a number of major capsid Gp23 proteins approximately 500 residues long, from T4-like bacteriophages.


Pssm-ID: 399804  Cd Length: 449  Bit Score: 213.02  E-value: 3.40e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 95932756     7 GNFVIASRNVVNILASADQGISLAMQGAAKG-LNTDTTKAVFAGVLAGKYKVFIDQYARQDYFTVGYKGDNEMDAGIYYA 85
Cdd:pfam07068 320 GNFIIASRNVVNALAMTDTGIGPAAQGLADGsFNTDTNKSVFAGVLGGKFKVYIDQYAKNDYFTVGFKGPNEMDAGIFYA 399
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 95932756    86 PYVALTPLRATDPQSFHPVLGFKTRYGIGINPFADSKSQAPSARITSGM 134
Cdd:pfam07068 400 PYVALTPLRGSDPKNFQPVIGFKTRYGIGINPFADPAAQAPASKIGNGA 448
 
Name Accession Description Interval E-value
23 PHA02541
major capsid protein; Provisional
6-154 2.10e-97

major capsid protein; Provisional


Pssm-ID: 177376  Cd Length: 518  Bit Score: 289.79  E-value: 2.10e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 95932756    6 AGNFVIASRNVVNILASADQGISLAMQGAAKGLNTDTTKAVFAGVLAGKYKVFIDQYARQDYFTVGYKGDNEMDAGIYYA 85
Cdd:PHA02541 370 AGNFIIASRNVVSALAMADTGISPAAQGLAGGLNVDTTKSVFAGVLGGKYKVYIDQYARQDYFTVGYKGSNEMDAGIYYC 449
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 95932756   86 PYVALTPLRATDPQSFHPVLGFKTRYGIGINPFADSKSQAPSARITSGMLSKDSVGKNAYFRRVWVKGC 154
Cdd:PHA02541 450 PYVALTPLRGSDPKNFQPVMGFKTRYGIGINPFADSTTQAPGARITSGMPSINSVGKNAYFRRVWVKGL 518
Gp23 pfam07068
Major capsid protein Gp23; This family contains a number of major capsid Gp23 proteins ...
7-134 3.40e-68

Major capsid protein Gp23; This family contains a number of major capsid Gp23 proteins approximately 500 residues long, from T4-like bacteriophages.


Pssm-ID: 399804  Cd Length: 449  Bit Score: 213.02  E-value: 3.40e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 95932756     7 GNFVIASRNVVNILASADQGISLAMQGAAKG-LNTDTTKAVFAGVLAGKYKVFIDQYARQDYFTVGYKGDNEMDAGIYYA 85
Cdd:pfam07068 320 GNFIIASRNVVNALAMTDTGIGPAAQGLADGsFNTDTNKSVFAGVLGGKFKVYIDQYAKNDYFTVGFKGPNEMDAGIFYA 399
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 95932756    86 PYVALTPLRATDPQSFHPVLGFKTRYGIGINPFADSKSQAPSARITSGM 134
Cdd:pfam07068 400 PYVALTPLRGSDPKNFQPVIGFKTRYGIGINPFADPAAQAPASKIGNGA 448
24 PHA02548
capsid vertex protein; Provisional
4-133 4.36e-15

capsid vertex protein; Provisional


Pssm-ID: 177383  Cd Length: 412  Bit Score: 70.92  E-value: 4.36e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 95932756    4 SRAGNFVIASRNVVNILASADQgislaMQgaakglNTDTTKAVFAGVLAGKYKVFIDQYARQDYFTVGYK---GDNEMDA 80
Cdd:PHA02548 262 SFEATYVVASSRVAAILAASGW-----ME------EKDEDDPLAYGYLRNGLPVYADTNSPFDYVIVGCKhdiGEMEHVG 330
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 95932756   81 GIYYAPYV----ALTPLRATDPQSFHPVLGFKTRYGIGINPFADSKSQApSARITSG 133
Cdd:PHA02548 331 SLFYSPYTeadhAGAFKVIVDPDSLQPSVGILVRYALSANPYTVAKDQK-EARIIDG 386
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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