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Conserved domains on  [gi|959124031|ref|YP_009184524|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Zaedyus pichiy]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 3.50e-70

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 205.17  E-value: 3.50e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   1 MNLMLTLTINTTLASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAAQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 959124031  81 AKNLTPMLITALFLISLLALGLAYEWLQKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 3.50e-70

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 205.17  E-value: 3.50e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   1 MNLMLTLTINTTLASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAAQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 959124031  81 AKNLTPMLITALFLISLLALGLAYEWLQKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 3.28e-32

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 108.67  E-value: 3.28e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   18 IIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAAQAKNL-TPMLITALFLIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELgWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 959124031   97 LLALGLAYEWLQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 13-113 2.42e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 89.41  E-value: 2.42e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031  13 LASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAAQAKNLTPM-LITA 91
Cdd:COG0838   18 LALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFgLIEM 95

                         90       100
                 ....*....|....*....|..
gi 959124031  92 LFLISLLALGLAYEWLQKGLEW 113
Cdd:COG0838   96 LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 3.50e-70

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 205.17  E-value: 3.50e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   1 MNLMLTLTINTTLASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAAQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 959124031  81 AKNLTPMLITALFLISLLALGLAYEWLQKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 1.45e-49

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 153.15  E-value: 1.45e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   1 MNLMLT-LTINTTLASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAA 79
Cdd:MTH00136   1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 959124031  80 QAKNLTPMLITALFLISLLALGLAYEWLQKGLEWTE 115
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 2.36e-46

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 145.14  E-value: 2.36e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   3 LMLTLTINTTLASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAAQAK 82
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 959124031  83 NLTPMLITALFLISLLALGLAYEWLQKGLEWTE 115
Cdd:MTH00069  82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 4.48e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 139.25  E-value: 4.48e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   1 MNLMLTLTINTTLASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAAQ 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 959124031  81 AKNLTPMLITALFLISLLALGLAYEWLQKGLEWT 114
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 1.44e-38

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 125.48  E-value: 1.44e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   1 MNLMLTLTINTTLASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAAQ 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 959124031  81 AKNLTPMLITALFLISLLALGLAYEWLQKGLEWTE 115
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 3-113 7.47e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 113.45  E-value: 7.47e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   3 LMLTLTINTTLASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAAQAk 82
Cdd:MTH00203   4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQL- 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 959124031  83 nLTPMLITALFLISLLALGLAYEWLQKGLEW 113
Cdd:MTH00203  83 -SSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 3.28e-32

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 108.67  E-value: 3.28e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   18 IIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAAQAKNL-TPMLITALFLIS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELgWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 959124031   97 LLALGLAYEWLQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 3.29e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 96.47  E-value: 3.29e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   1 MNLMLTLTINTTLASLLIIIAFWLPQVNVYM-EKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAA 79
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRSYSDrEKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 959124031  80 QAKNLTPMLITALFLISLLALGLAYEWLQKGLEWTE 115
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-113 5.85e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 95.61  E-value: 5.85e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   2 NLMLTLTINTTLASLLIIIAFWL-PQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAAQ 80
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 959124031  81 AKNLTPMLITALFLISLLALGLAYEWLQKGLEW 113
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-113 1.42e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 92.36  E-value: 1.42e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   1 MNLMLTLTINTTLASLLIIIAFWLPQVNVYM--EKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMdrEKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 959124031  79 AQAKNLTPMLITALFLISLLALGLAYEWLQKGLEW 113
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 13-113 2.42e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 89.41  E-value: 2.42e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031  13 LASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAAQAKNLTPM-LITA 91
Cdd:COG0838   18 LALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFgLIEM 95

                         90       100
                 ....*....|....*....|..
gi 959124031  92 LFLISLLALGLAYEWLQKGLEW 113
Cdd:COG0838   96 LVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-113 3.19e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 83.99  E-value: 3.19e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031  32 EKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAAQAKNLTPMLITALFLIsLLALGLAYEWLQKGL 111
Cdd:MTH00055  37 EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLI-ILTIGLIYEWVKGGL 115


                 ..
gi 959124031 112 EW 113
Cdd:MTH00055 116 EW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 7-114 3.80e-21

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 81.06  E-value: 3.80e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   7 LTINTTLASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAAQAKNLT- 85
Cdd:PRK06602  15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGw 92

                         90       100
                 ....*....|....*....|....*....
gi 959124031  86 PMLITALFLISLLALGLAYEWLQKGLEWT 114
Cdd:PRK06602  93 LGFVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-113 4.38e-21

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 80.88  E-value: 4.38e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   1 MNLMLTLTINTTLASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAAQ 80
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 959124031  81 AKNLTPM--LITALFLIsLLALGLAYEWLQKGLEW 113
Cdd:MTH00018  79 YNQIAPFgfWTMVGFLF-ILTLGLIYEWIKGGLEW 112
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-114 1.18e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 79.90  E-value: 1.18e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   1 MNLMLTLTINTTLASLLIIIAFWL--PQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVlaARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 959124031  79 AQAKNLTPMLITALFLISLLALGLAYEWLQKGLEWT 114
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-113 1.64e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 77.28  E-value: 1.64e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031  32 EKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAAQAKNLTPMLITALFLIsLLALGLAYEWLQKGL 111
Cdd:MTH00030  42 EKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLI-VLAIGLAYEWIKGGL 120


                 ..
gi 959124031 112 EW 113
Cdd:MTH00030 121 EW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 13-114 3.58e-13

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 60.77  E-value: 3.58e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031  13 LASLLIIIAFWLPQ----VNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAAQAKNL-TPM 87
Cdd:CHL00022  16 ISSLIPILAFLISGllapISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLgVSA 93

                         90       100
                 ....*....|....*....|....*..
gi 959124031  88 LITALFLISLLALGLAYEWLQKGLEWT 114
Cdd:CHL00022  94 FIEALIFVLILIVGLVYAWRKGALEWS 120
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-113 8.54e-11

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 54.75  E-value: 8.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031  32 EKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPlpWAAQAKNLTPM-LITALFLISLLALGLAYEWLQKG 110
Cdd:PRK07756  41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGLFaLIEMLIFVVMLLVGLAYAWKKKV 118


                 ...
gi 959124031 111 LEW 113
Cdd:PRK07756 119 LQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 3.52e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 50.44  E-value: 3.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031  33 KSSPYECGFDPMGSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWAAQAKNL-TPMLITALFLISLLALGLAYEWLQK 109
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALgVFGLVEMALFMLTVFVAYAYVWRRG 114


                 ....*
gi 959124031 110 GLEWT 114
Cdd:PRK07928 115 GLEWD 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 6.88e-08

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 47.35  E-value: 6.88e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031  33 KSSPYECGFDPMGSARlPFSMKFFLVAITFLLFDLEIALLlpLPWAAQAKNLTPM-LITALFLISLLALGLAYEWLQKGL 111
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFgLIEMLLFIVLLTIGFIYAWKKGAL 123


                 ..
gi 959124031 112 EW 113
Cdd:PRK08489 124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 4.08e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.19  E-value: 4.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 959124031   1 MNLMLTLTINTTLASLLIIIAFWLPQVNVYMEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLpwaaq 80
Cdd:MTH00092   2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL----- 76

                         90       100       110
                 ....*....|....*....|....*....|....
gi 959124031  81 AKNLTPMLITALFLISLLALGLAYEWLQKGLEWT 114
Cdd:MTH00092  77 LVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIWV 110
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 35-76 1.24e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 38.34  E-value: 1.24e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 959124031  35 SPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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