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Conserved domains on  [gi|957801711|ref|YP_009176887|]
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envelope glycoprotein N [Testudinid alphaherpesvirus 3]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Herpes_UL73 super family cl29774
UL73 viral envelope glycoprotein; This family groups together the viral proteins BLRF1, U46, ...
 28-97 5.93e-04

UL73 viral envelope glycoprotein; This family groups together the viral proteins BLRF1, U46, 53, and UL73. The UL73-like envelope glycoproteins, which associates in a high molecular mass complex with its counterpart, gM, induce neutralising antibody responses in the host. These glycoprotein are highly polymorphic, particularly in the N-terminal region.


The actual alignment was detected with superfamily member pfam03554:

Pssm-ID: 392192  Cd Length: 74  Bit Score: 35.48  E-value: 5.93e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 957801711   28 ATPVPPTVAEEPSSAPNSRFMEFTCSGSDYYLEHITFSSGLFIFGFCIMLLSTILALYSCCFHMFVKEMA 97
Cdd:pfam03554   5 AASQTSTVSWGSTIHATNDFYSSTCSADTYSPSLSSFSSIWALLNLLVVICAFLIYLRHLCFKKFTATTT 74
 
Name Accession Description Interval E-value
Herpes_UL73 pfam03554
UL73 viral envelope glycoprotein; This family groups together the viral proteins BLRF1, U46, ...
 28-97 5.93e-04

UL73 viral envelope glycoprotein; This family groups together the viral proteins BLRF1, U46, 53, and UL73. The UL73-like envelope glycoproteins, which associates in a high molecular mass complex with its counterpart, gM, induce neutralising antibody responses in the host. These glycoprotein are highly polymorphic, particularly in the N-terminal region.


Pssm-ID: 281543  Cd Length: 74  Bit Score: 35.48  E-value: 5.93e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 957801711   28 ATPVPPTVAEEPSSAPNSRFMEFTCSGSDYYLEHITFSSGLFIFGFCIMLLSTILALYSCCFHMFVKEMA 97
Cdd:pfam03554   5 AASQTSTVSWGSTIHATNDFYSSTCSADTYSPSLSSFSSIWALLNLLVVICAFLIYLRHLCFKKFTATTT 74
 
Name Accession Description Interval E-value
Herpes_UL73 pfam03554
UL73 viral envelope glycoprotein; This family groups together the viral proteins BLRF1, U46, ...
 28-97 5.93e-04

UL73 viral envelope glycoprotein; This family groups together the viral proteins BLRF1, U46, 53, and UL73. The UL73-like envelope glycoproteins, which associates in a high molecular mass complex with its counterpart, gM, induce neutralising antibody responses in the host. These glycoprotein are highly polymorphic, particularly in the N-terminal region.


Pssm-ID: 281543  Cd Length: 74  Bit Score: 35.48  E-value: 5.93e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 957801711   28 ATPVPPTVAEEPSSAPNSRFMEFTCSGSDYYLEHITFSSGLFIFGFCIMLLSTILALYSCCFHMFVKEMA 97
Cdd:pfam03554   5 AASQTSTVSWGSTIHATNDFYSSTCSADTYSPSLSSFSSIWALLNLLVVICAFLIYLRHLCFKKFTATTT 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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