NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|955342160|ref|XP_014617804|]
View 

probable methyltransferase PMT20 [Glycine max]

Protein Classification

class I SAM-dependent methyltransferase( domain architecture ID 12042358)

class I SAM-dependent methyltransferase catalyzes the methylation of one or more specific substrates using S-adenosyl-L-methionine (SAM or AdoMet) as the methyl donor; similar to Arabidopsis thaliana methyltransferase PMTs

CATH:  2.20.25.110
EC:  2.1.1.-
PubMed:  12504684|12826405
SCOP:  3000118

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Methyltransf_29 pfam03141
Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative ...
80-586 0e+00

Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase.


:

Pssm-ID: 335237 [Multi-domain]  Cd Length: 506  Bit Score: 802.68  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160   80 DYTPCTDPRRWRKY--GMYRLTLLERHCPSVFERKECLVPPPDGYKPPIRWPKSRDECWYRNVPYDWINNQKSDQHWLRK 157
Cdd:pfam03141   1 DYIPCLDNKRAIKFllSRERMEHRERHCPPPEEKLNCLVPPPDGYKTPIPWPKSRDKVWYANVPHTKLAEEKGGQNWVKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  158 EGEKFLFPGGGTMFPDGVGEYVDLMQDLIPEM-KDGTVRTAIDTGCGVASWGGDLLDRGILTISLAPRDNHEAQVQFALE 236
Cdd:pfam03141  81 EGDKFTFPGGGTQFPHGADQYIDFIAQMIPDIaWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  237 RGIPAVLGVISTQRLPFPSNSFDMAHCSRCLIPWTEFGGIYLMEIHRILRPGGFWILSGPPVNyerrwrgwNTTIEDQRS 316
Cdd:pfam03141 161 RGIPAMLGVLGTKRLPYPSRSFDLAHCSRCRIPWTANDGILLLEVDRVLRPGGYFVLSGPPVY--------ARTEEDLQE 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  317 DYEKLQELLTSMCFKLYNKKDDIAVWQKAKDNHCYEKLARESYPAKCDDSIEPDSGWYTPLRACFVVPDPKYKKSGLTYM 396
Cdd:pfam03141 233 IWKEMEDLTKSLCWKLVAKKGDIAIWQKPLNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEVGGGWP 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  397 PKWPERLLAAPERITT--VHGSSTSTFSHDNGKWKKRIQHYKKLL-PELGTDKVRNVMDMNTVYGAFAAALINDPLWVMN 473
Cdd:pfam03141 313 EPWPARLTAVPPRLSSgqIGGVSPESFKADTELWKKRVNKYKRLLkLGIDWGKVRNVMDMNAGFGGFAAALIDLPVWVMN 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  474 VVSSYAPNTLPVVFDRGLIGILHDWCEAFSTYPRTYDLLHLDGLFSAESHRCEMKHVLLEMDRILRPAGHAIIRESVYFV 553
Cdd:pfam03141 393 VVPVDSPNTLPVIYDRGLIGIYHDWCEAFSTYPRTYDLLHADHLFSLYKKRCNLVDILLEMDRILRPEGFVIIRDSVDVL 472
                         490       500       510
                  ....*....|....*....|....*....|....
gi 955342160  554 DAIATIGKGMRWVCRKENTEYGV-DKEKILICQK 586
Cdd:pfam03141 473 DKVKKIAKAMRWEVRMTDTEDGPhVPEKILIAQK 506
 
Name Accession Description Interval E-value
Methyltransf_29 pfam03141
Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative ...
80-586 0e+00

Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase.


Pssm-ID: 335237 [Multi-domain]  Cd Length: 506  Bit Score: 802.68  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160   80 DYTPCTDPRRWRKY--GMYRLTLLERHCPSVFERKECLVPPPDGYKPPIRWPKSRDECWYRNVPYDWINNQKSDQHWLRK 157
Cdd:pfam03141   1 DYIPCLDNKRAIKFllSRERMEHRERHCPPPEEKLNCLVPPPDGYKTPIPWPKSRDKVWYANVPHTKLAEEKGGQNWVKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  158 EGEKFLFPGGGTMFPDGVGEYVDLMQDLIPEM-KDGTVRTAIDTGCGVASWGGDLLDRGILTISLAPRDNHEAQVQFALE 236
Cdd:pfam03141  81 EGDKFTFPGGGTQFPHGADQYIDFIAQMIPDIaWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  237 RGIPAVLGVISTQRLPFPSNSFDMAHCSRCLIPWTEFGGIYLMEIHRILRPGGFWILSGPPVNyerrwrgwNTTIEDQRS 316
Cdd:pfam03141 161 RGIPAMLGVLGTKRLPYPSRSFDLAHCSRCRIPWTANDGILLLEVDRVLRPGGYFVLSGPPVY--------ARTEEDLQE 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  317 DYEKLQELLTSMCFKLYNKKDDIAVWQKAKDNHCYEKLARESYPAKCDDSIEPDSGWYTPLRACFVVPDPKYKKSGLTYM 396
Cdd:pfam03141 233 IWKEMEDLTKSLCWKLVAKKGDIAIWQKPLNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEVGGGWP 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  397 PKWPERLLAAPERITT--VHGSSTSTFSHDNGKWKKRIQHYKKLL-PELGTDKVRNVMDMNTVYGAFAAALINDPLWVMN 473
Cdd:pfam03141 313 EPWPARLTAVPPRLSSgqIGGVSPESFKADTELWKKRVNKYKRLLkLGIDWGKVRNVMDMNAGFGGFAAALIDLPVWVMN 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  474 VVSSYAPNTLPVVFDRGLIGILHDWCEAFSTYPRTYDLLHLDGLFSAESHRCEMKHVLLEMDRILRPAGHAIIRESVYFV 553
Cdd:pfam03141 393 VVPVDSPNTLPVIYDRGLIGIYHDWCEAFSTYPRTYDLLHADHLFSLYKKRCNLVDILLEMDRILRPEGFVIIRDSVDVL 472
                         490       500       510
                  ....*....|....*....|....*....|....
gi 955342160  554 DAIATIGKGMRWVCRKENTEYGV-DKEKILICQK 586
Cdd:pfam03141 473 DKVKKIAKAMRWEVRMTDTEDGPhVPEKILIAQK 506
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
173-301 1.50e-11

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 62.32  E-value: 1.50e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160 173 DGVGEYVDLMQDLIPEMKDGTVRTAIDTGCGvaswggdlldRGILTISLAPR-------DNHEAQVQFALERGIPAVLGV 245
Cdd:COG2226    2 DRVAARYDGREALLAALGLRPGARVLDLGCG----------TGRLALALAERgarvtgvDISPEMLELARERAAEAGLNV 71
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 955342160 246 ----ISTQRLPFPSNSFDMAHCSRCLIPWTEFGGIyLMEIHRILRPGGFWILS--GPPVNYE 301
Cdd:COG2226   72 efvvGDAEDLPFPDGSFDLVISSFVLHHLPDPERA-LAEIARVLKPGGRLVVVdfSPPDLAE 132
PRK08317 PRK08317
hypothetical protein; Provisional
196-289 5.77e-03

hypothetical protein; Provisional


Pssm-ID: 181382 [Multi-domain]  Cd Length: 241  Bit Score: 38.76  E-value: 5.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160 196 TAIDTGCGvaswggdlldRGILTISLAPR----------DNHEAQVQFALERGIPA------VLGVIstQRLPFPSNSFD 259
Cdd:PRK08317  22 RVLDVGCG----------PGNDARELARRvgpegrvvgiDRSEAMLALAKERAAGLgpnvefVRGDA--DGLPFPDGSFD 89
                         90       100       110
                 ....*....|....*....|....*....|..
gi 955342160 260 MAHCSRCL--IPWTEFGgiyLMEIHRILRPGG 289
Cdd:PRK08317  90 AVRSDRVLqhLEDPARA---LAEIARVLRPGG 118
 
Name Accession Description Interval E-value
Methyltransf_29 pfam03141
Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative ...
80-586 0e+00

Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase.


Pssm-ID: 335237 [Multi-domain]  Cd Length: 506  Bit Score: 802.68  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160   80 DYTPCTDPRRWRKY--GMYRLTLLERHCPSVFERKECLVPPPDGYKPPIRWPKSRDECWYRNVPYDWINNQKSDQHWLRK 157
Cdd:pfam03141   1 DYIPCLDNKRAIKFllSRERMEHRERHCPPPEEKLNCLVPPPDGYKTPIPWPKSRDKVWYANVPHTKLAEEKGGQNWVKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  158 EGEKFLFPGGGTMFPDGVGEYVDLMQDLIPEM-KDGTVRTAIDTGCGVASWGGDLLDRGILTISLAPRDNHEAQVQFALE 236
Cdd:pfam03141  81 EGDKFTFPGGGTQFPHGADQYIDFIAQMIPDIaWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  237 RGIPAVLGVISTQRLPFPSNSFDMAHCSRCLIPWTEFGGIYLMEIHRILRPGGFWILSGPPVNyerrwrgwNTTIEDQRS 316
Cdd:pfam03141 161 RGIPAMLGVLGTKRLPYPSRSFDLAHCSRCRIPWTANDGILLLEVDRVLRPGGYFVLSGPPVY--------ARTEEDLQE 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  317 DYEKLQELLTSMCFKLYNKKDDIAVWQKAKDNHCYEKLARESYPAKCDDSIEPDSGWYTPLRACFVVPDPKYKKSGLTYM 396
Cdd:pfam03141 233 IWKEMEDLTKSLCWKLVAKKGDIAIWQKPLNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEVGGGWP 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  397 PKWPERLLAAPERITT--VHGSSTSTFSHDNGKWKKRIQHYKKLL-PELGTDKVRNVMDMNTVYGAFAAALINDPLWVMN 473
Cdd:pfam03141 313 EPWPARLTAVPPRLSSgqIGGVSPESFKADTELWKKRVNKYKRLLkLGIDWGKVRNVMDMNAGFGGFAAALIDLPVWVMN 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  474 VVSSYAPNTLPVVFDRGLIGILHDWCEAFSTYPRTYDLLHLDGLFSAESHRCEMKHVLLEMDRILRPAGHAIIRESVYFV 553
Cdd:pfam03141 393 VVPVDSPNTLPVIYDRGLIGIYHDWCEAFSTYPRTYDLLHADHLFSLYKKRCNLVDILLEMDRILRPEGFVIIRDSVDVL 472
                         490       500       510
                  ....*....|....*....|....*....|....
gi 955342160  554 DAIATIGKGMRWVCRKENTEYGV-DKEKILICQK 586
Cdd:pfam03141 473 DKVKKIAKAMRWEVRMTDTEDGPhVPEKILIAQK 506
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
173-301 1.50e-11

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 62.32  E-value: 1.50e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160 173 DGVGEYVDLMQDLIPEMKDGTVRTAIDTGCGvaswggdlldRGILTISLAPR-------DNHEAQVQFALERGIPAVLGV 245
Cdd:COG2226    2 DRVAARYDGREALLAALGLRPGARVLDLGCG----------TGRLALALAERgarvtgvDISPEMLELARERAAEAGLNV 71
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 955342160 246 ----ISTQRLPFPSNSFDMAHCSRCLIPWTEFGGIyLMEIHRILRPGGFWILS--GPPVNYE 301
Cdd:COG2226   72 efvvGDAEDLPFPDGSFDLVISSFVLHHLPDPERA-LAEIARVLKPGGRLVVVdfSPPDLAE 132
Methyltransf_11 pfam08241
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
198-290 1.76e-08

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 462406 [Multi-domain]  Cd Length: 94  Bit Score: 52.28  E-value: 1.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  198 IDTGCGVASWGGDLLDRGILTISLaprDNHEAQVQFALERGIPAVLGVI--STQRLPFPSNSFDMAHCSRCLiPWTEFGG 275
Cdd:pfam08241   1 LDVGCGTGLLTELLARLGARVTGV---DISPEMLELAREKAPREGLTFVvgDAEDLPFPDNSFDLVLSSEVL-HHVEDPE 76
                          90
                  ....*....|....*
gi 955342160  276 IYLMEIHRILRPGGF 290
Cdd:pfam08241  77 RALREIARVLKPGGI 91
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
201-289 7.76e-08

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 50.25  E-value: 7.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160  201 GCGvaswggdlldRGILTISLAPR--------DNHEAQVQFALERGIPAVLGVISTQ----RLPFPSNSFDMAHCSRCL- 267
Cdd:pfam13649   5 GCG----------TGRLTLALARRggarvtgvDLSPEMLERARERAAEAGLNVEFVQgdaeDLPFPDGSFDLVVSSGVLh 74
                          90       100
                  ....*....|....*....|...
gi 955342160  268 -IPWTEFGGIyLMEIHRILRPGG 289
Cdd:pfam13649  75 hLPDPDLEAA-LREIARVLKPGG 96
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
195-296 2.15e-05

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 44.24  E-value: 2.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160 195 RTAIDTGCGVaswggdlldrGILTISLAPR-------DNHEAQVQFALERG--IPAVLGVISTQRLPFPSNSFDMAHCSR 265
Cdd:COG2227   26 GRVLDVGCGT----------GRLALALARRgadvtgvDISPEALEIARERAaeLNVDFVQGDLEDLPLEDGSFDLVICSE 95
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 955342160 266 CLI----PWTefggiYLMEIHRILRPGGFWILSGP 296
Cdd:COG2227   96 VLEhlpdPAA-----LLRELARLLKPGGLLLLSTP 125
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
171-295 8.42e-05

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 43.75  E-value: 8.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160 171 FPDGVGEYVDLMQDLIPEMKDGtvRTAIDTGCGvaswggdlldRGILTISLAPR--------DNHEAQVQFALERGIPAV 242
Cdd:COG0500    6 YSDELLPGLAALLALLERLPKG--GRVLDLGCG----------TGRNLLALAARfggrvigiDLSPEAIALARARAAKAG 73
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 955342160 243 LGVIS------TQRLPFPSNSFD--MAHCSRCLIPwTEFGGIYLMEIHRILRPGGFWILSG 295
Cdd:COG0500   74 LGNVEflvadlAELDPLPAESFDlvVAFGVLHHLP-PEEREALLRELARALKPGGVLLLSA 133
COG4627 COG4627
Predicted SAM-depedendent methyltransferase [General function prediction only];
248-319 1.47e-04

Predicted SAM-depedendent methyltransferase [General function prediction only];


Pssm-ID: 443666 [Multi-domain]  Cd Length: 161  Bit Score: 42.55  E-value: 1.47e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 955342160 248 TQRLPFPSNSFDMAHCSRCL--IPWTEFGGIyLMEIHRILRPGGFWILSGPpvNYERRWRGWNTTIEDQRSDYE 319
Cdd:COG4627   37 TDPLPFPDNSVDAIYSSHVLehLDYEEAPLA-LKECYRVLKPGGILRIVVP--DLEHVARLYLAEYDAALDVAE 107
COG4976 COG4976
Predicted methyltransferase, contains TPR repeat [General function prediction only];
180-294 9.55e-04

Predicted methyltransferase, contains TPR repeat [General function prediction only];


Pssm-ID: 444001 [Multi-domain]  Cd Length: 181  Bit Score: 40.37  E-value: 9.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160 180 DLMQDLIPEMKDGTVRTAIDTGCGVaswggdlldrGILTISLAPRDNH-------EAQVQFALERGIPAVLGVISTQRLP 252
Cdd:COG4976   33 LLAEELLARLPPGPFGRVLDLGCGT----------GLLGEALRPRGYRltgvdlsEEMLAKAREKGVYDRLLVADLADLA 102
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 955342160 253 FPSNSFDMAHCSRCLIPWTEFGGIyLMEIHRILRPGGFWILS 294
Cdd:COG4976  103 EPDGRFDLIVAADVLTYLGDLAAV-FAGVARALKPGGLFIFS 143
PRK08317 PRK08317
hypothetical protein; Provisional
196-289 5.77e-03

hypothetical protein; Provisional


Pssm-ID: 181382 [Multi-domain]  Cd Length: 241  Bit Score: 38.76  E-value: 5.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 955342160 196 TAIDTGCGvaswggdlldRGILTISLAPR----------DNHEAQVQFALERGIPA------VLGVIstQRLPFPSNSFD 259
Cdd:PRK08317  22 RVLDVGCG----------PGNDARELARRvgpegrvvgiDRSEAMLALAKERAAGLgpnvefVRGDA--DGLPFPDGSFD 89
                         90       100       110
                 ....*....|....*....|....*....|..
gi 955342160 260 MAHCSRCL--IPWTEFGgiyLMEIHRILRPGG 289
Cdd:PRK08317  90 AVRSDRVLqhLEDPARA---LAEIARVLRPGG 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH