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Conserved domains on  [gi|953245177|ref|YP_009180349|]
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cytochrome b (mitochondrion) [Aldabrachelys gigantea]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 737.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 161 LVQWIWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 241 LTLTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 321 LNQILLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILMPVAGMIENKMLNL 380
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 737.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 161 LVQWIWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 241 LTLTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 321 LNQILLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILMPVAGMIENKMLNL 380
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-374 6.17e-135

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 390.69  E-value: 6.17e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  12 IKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  92 FMCIYLHIGRGLYYGSylYKE----TWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWG 167
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 168 GFSVDNATLTRFFTFH-FLLPFIIMGLAIVHLLFLHETGSNNPTG----LNSNTDKIPFHPYFSYKDLLGLVLMLTLLLT 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 243 LTLFSPNllGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLASILVLFLMPTLHTSKQRSTMFRP 320
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 953245177 321 LNQILLWCLAADLLVLTWIGGQPVenPFIIIGQVASTLYFTILIILMPVAGMIE 374
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.82e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 290.04  E-value: 3.82e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  10 PMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  90 IFFMCIYLHIGRGLYYGSY--LYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 953245177 168 GFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.68e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 264.63  E-value: 2.68e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   19 FIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIFFMCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   99 IGRGLYYG--SYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 953245177  177 TRFFTFHFLLPFIIMGLAIVHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-319 8.16e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.03  E-value: 8.16e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 953245177  259 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFR 319
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 737.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 161 LVQWIWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 241 LTLTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 321 LNQILLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILMPVAGMIENKMLNL 380
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 3-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 715.28  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   3 TNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRN 82
Cdd:MTH00131   2 ASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  83 MHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLV 162
Cdd:MTH00131  82 LHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 163 QWIWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLLLT 242
Cdd:MTH00131 162 QWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 243 LTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRPLN 322
Cdd:MTH00131 242 LALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLT 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 953245177 323 QILLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILMPVAGMIENKMLN 379
Cdd:MTH00131 322 QFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 3-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 712.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   3 TNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRN 82
Cdd:MTH00100   2 TNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  83 MHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLV 162
Cdd:MTH00100  82 LHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 163 QWIWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLLLT 242
Cdd:MTH00100 162 EWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLML 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 243 LTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRPLN 322
Cdd:MTH00100 242 LVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLS 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 953245177 323 QILLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILMPVAGMIENKML 378
Cdd:MTH00100 322 QCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 701.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLI 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNT 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 161 LVQWIWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 241 LTLTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 321 LNQILLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILMPVAGMIENKMLNL 380
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 5-369 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 656.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   5 LRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  85 ANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 165 IWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLLLTLT 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 245 LFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRPLNQI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 953245177 325 LLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILMPV 369
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 5-379 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 622.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   5 LRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMH 84
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  85 ANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQW 164
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 165 IWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLLLTLT 244
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 245 LFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRPLNQI 324
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 953245177 325 LLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILMPVAGMIENKMLN 379
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 619.11  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  12 IKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  92 FMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 172 DNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLLLTLTLFSPNLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 252 GDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRPLNQILLWCLAA 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 953245177 332 DLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILM 367
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 613.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLI 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNT 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 161 LVQWIWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 241 LTLTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 953245177 321 LNQILLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILmPVAGMIENKML 378
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 580.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLI 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNT 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 161 LVQWIWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 241 LTLTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 953245177 321 LNQILLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIIlMPVAGMIENKML 378
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI-NPLLMKLWDKLL 377
CYTB MTH00053
cytochrome b; Provisional
 1-381 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 536.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLI 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNT 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 161 LVQWIWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 241 LTLTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 953245177 321 LNQILLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILMPVAGMIENKMLNLK 381
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKLV 381
CYTB MTH00022
cytochrome b; Validated
 5-381 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 528.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   5 LRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMH 84
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  85 ANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQW 164
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 165 IWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLLLTLT 244
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 245 LFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRPLNQI 324
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 953245177 325 LLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILIILMPVAGMIENKMLNLK 381
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLFKN 379
CYTB MTH00224
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 517.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLI 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNT 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 161 LVQWIWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 241 LTLTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 953245177 321 LNQILLWCLAADLLVLTWIGGQPVENPFIIIGQVASTLYFTILII 365
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 5-375 1.13e-136

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 395.08  E-value: 1.13e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   5 LRKTHPMIKIinNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMH 84
Cdd:MTH00033   3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  85 ANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQW 164
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 165 IWGGFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLLLTLT 244
Cdd:MTH00033 161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 245 LFS--PNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRPLN 322
Cdd:MTH00033 241 IEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 953245177 323 QILLWCLAADLLVLTWIGGQPV-ENPFIIIGQVASTLYFTILIILMPVAGMIEN 375
Cdd:MTH00033 321 KFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-374 6.17e-135

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 390.69  E-value: 6.17e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  12 IKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  92 FMCIYLHIGRGLYYGSylYKE----TWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWG 167
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 168 GFSVDNATLTRFFTFH-FLLPFIIMGLAIVHLLFLHETGSNNPTG----LNSNTDKIPFHPYFSYKDLLGLVLMLTLLLT 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 243 LTLFSPNllGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLASILVLFLMPTLHTSKQRSTMFRP 320
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 953245177 321 LNQILLWCLAADLLVLTWIGGQPVenPFIIIGQVASTLYFTILIILMPVAGMIE 374
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 13-367 6.29e-126

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 366.57  E-value: 6.29e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  13 KIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  93 MCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 173 NATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDlLGLVLMLTLLLTLTLFSPNLLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 253 DPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSkqrSTMFRPLNQILLWCLAAD 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 953245177 333 LLVLTWIGGQPVENPFIIIGQVASTLYFTILIILM 367
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.82e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 290.04  E-value: 3.82e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  10 PMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  90 IFFMCIYLHIGRGLYYGSY--LYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 953245177 168 GFSVDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-365 1.04e-96

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 292.27  E-value: 1.04e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  11 MIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASI 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  91 FFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFS 170
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 171 VDNATLTRFFTFHFLLPFIIMGLAIVHLLFLHETGSNNPTGL-NSNTDKIPFHPYFSYKDLLGLVLMLTLLLTLTLFSPN 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 250 LLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLASILVLFLMPTlhtsKQRSTMFRPLNQILLWCL 329
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPT----FNGSSVYSVWRQVNFWLI 315

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 953245177 330 AADLLVLTWIGGQPVENPFIIIGQVASTLYFTILII 365
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.68e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 264.63  E-value: 2.68e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   19 FIDLPSPSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIFFMCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   99 IGRGLYYG--SYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVDNATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 953245177  177 TRFFTFHFLLPFIIMGLAIVHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-355 3.61e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 167.82  E-value: 3.61e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 208 NPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLLLTLTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPN 287
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 953245177 288 KLGGVLALLASILVLFLMPTLHTSKQRSTmFRPLNQILLWCLAADLLVLTWIGGQPVENPFIIIGQVA 355
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 5.11e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.03  E-value: 5.11e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  259 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFRPLNQILLWCLAADLLVLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 953245177  339 IGGQPVENPFIIIGQVASTLY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 2.35e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 156.25  E-value: 2.35e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177   89 SIFFMCIYLHIGRGLYYGSYLYKE--TWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  167 GGFSVDNATLTRFFTFHF-LLPFIIMGLAIVHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLVLMLTLLLTLTL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 953245177  246 FSPNLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 34-209 6.34e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 138.69  E-value: 6.34e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  34 FGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKE- 112
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 113 -TWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVDNATLTRFFTFH-FLLPFII 190
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 953245177 191 MGLAIVHLLFLHETGSNNP 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 25-209 7.13e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 127.53  E-value: 7.13e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177  25 PSNISAWWNFGSLLGICLILQIVTGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953245177 105 YGSYLYKE--TWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVDNATLTRFFTF 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 953245177 183 H-FLLPFIIMGLAIVHLLFLHETGSNNP 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
petD CHL00058
cytochrome b6/f complex subunit IV
 259-319 8.97e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 56.93  E-value: 8.97e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 953245177 259 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFR 319
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFR 125
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 259-319 1.38e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.34  E-value: 1.38e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 953245177 259 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFR 319
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFR 126
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-319 8.16e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.03  E-value: 8.16e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 953245177  259 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLFLMPTLHTSKQRSTMFR 319
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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