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Conserved domains on  [gi|948291504|gb|ALM57866|]
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DNA-binding protein [Staphylococcus equorum]

Protein Classification

nuclear transport factor 2 family protein( domain architecture ID 10422339)

nuclear transport factor 2 (NTF2) family protein with a SnoaL-like polyketide cyclase domain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HHH_5 super family cl22429
Helix-hairpin-helix domain;
5-60 7.79e-08

Helix-hairpin-helix domain;


The actual alignment was detected with superfamily member PRK07758:

Pssm-ID: 473956 [Multi-domain]  Cd Length: 95  Bit Score: 48.38  E-value: 7.79e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 948291504   5 LPKIGRPATQALNNIGITTLEKVAQYERTALLGIHGIGPKAIETLHEALIDINLNF 60
Cdd:PRK07758  39 LSLLSAPARRALEHHGIHTVEELSKYSEKEILKLHGMGPASLPKLRKALEESGLSF 94
WI12 super family cl42057
Wound-induced protein WI12; This family consists of several plant wound-induced protein ...
 98-190 3.65e-05

Wound-induced protein WI12; This family consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum. Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development. This family seems partly related to the NTF2-like superfamily.


The actual alignment was detected with superfamily member COG3631:

Pssm-ID: 477929  Cd Length: 126  Bit Score: 41.84  E-value: 3.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948291504  98 DKAQLFEAVTEDFIWEVPGAF---ELHG---FEAFYDEINEHkFDIASLEVTHNISHGKLGAVHGT---QIAQNGDSV-- 166
Cdd:COG3631   17 DVDALLALLAEDVVWEDPGGPgagTYRGkeaVRAFFARLAAA-FEDLRFEVRRVVADGDRVVVEGTvrgTVLATGKPYen 95

                         90       100
                 ....*....|....*....|....
gi 948291504 167 YFADFFEFEshskNAKVKKITSYV 190
Cdd:COG3631   96 RYADVFTVR----DGKIVRVREYF 115
 
Name Accession Description Interval E-value
PRK07758 PRK07758
hypothetical protein; Provisional
 5-60 7.79e-08

hypothetical protein; Provisional


Pssm-ID: 181104 [Multi-domain]  Cd Length: 95  Bit Score: 48.38  E-value: 7.79e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 948291504   5 LPKIGRPATQALNNIGITTLEKVAQYERTALLGIHGIGPKAIETLHEALIDINLNF 60
Cdd:PRK07758  39 LSLLSAPARRALEHHGIHTVEELSKYSEKEILKLHGMGPASLPKLRKALEESGLSF 94
YesE COG3631
Ketosteroid isomerase-related protein [General function prediction only];
98-190 3.65e-05

Ketosteroid isomerase-related protein [General function prediction only];


Pssm-ID: 442849  Cd Length: 126  Bit Score: 41.84  E-value: 3.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948291504  98 DKAQLFEAVTEDFIWEVPGAF---ELHG---FEAFYDEINEHkFDIASLEVTHNISHGKLGAVHGT---QIAQNGDSV-- 166
Cdd:COG3631   17 DVDALLALLAEDVVWEDPGGPgagTYRGkeaVRAFFARLAAA-FEDLRFEVRRVVADGDRVVVEGTvrgTVLATGKPYen 95

                         90       100
                 ....*....|....*....|....
gi 948291504 167 YFADFFEFEshskNAKVKKITSYV 190
Cdd:COG3631   96 RYADVFTVR----DGKIVRVREYF 115
HHH_5 pfam14520
Helix-hairpin-helix domain;
3-53 4.59e-04

Helix-hairpin-helix domain;


Pssm-ID: 434010 [Multi-domain]  Cd Length: 57  Bit Score: 37.08  E-value: 4.59e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 948291504    3 TELPKIGrPAT-QALNNIGITTLEKVAQYERTALLGIHGIGPKAIETLHEAL 53
Cdd:pfam14520   5 LSISGIG-PKTaLALLSAGIGTVEDLAEADVDELAEIPGIGEKTAQRIILEL 55
SnoaL_2 pfam12680
SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.
 98-175 1.61e-03

SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.


Pssm-ID: 432716 [Multi-domain]  Cd Length: 100  Bit Score: 36.50  E-value: 1.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948291504   98 DKAQLFEAVTEDFIWEVPGAfELHGFEAFYDEINEH--KFDIASLEVTHNISHGKLGAVHGTQIAQ-----NGDSVYFAD 170
Cdd:pfam12680  12 DLDALAALFAPDAVFHDPGG-PLRGRDAIRAFFAALfaAFPDLRFEIHDVIADGDRVAVRWTVTGTipptgRGVRVRGVD 90


                  ....*
gi 948291504  171 FFEFE 175
Cdd:pfam12680  91 VFRFR 95
 
Name Accession Description Interval E-value
PRK07758 PRK07758
hypothetical protein; Provisional
 5-60 7.79e-08

hypothetical protein; Provisional


Pssm-ID: 181104 [Multi-domain]  Cd Length: 95  Bit Score: 48.38  E-value: 7.79e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 948291504   5 LPKIGRPATQALNNIGITTLEKVAQYERTALLGIHGIGPKAIETLHEALIDINLNF 60
Cdd:PRK07758  39 LSLLSAPARRALEHHGIHTVEELSKYSEKEILKLHGMGPASLPKLRKALEESGLSF 94
YesE COG3631
Ketosteroid isomerase-related protein [General function prediction only];
98-190 3.65e-05

Ketosteroid isomerase-related protein [General function prediction only];


Pssm-ID: 442849  Cd Length: 126  Bit Score: 41.84  E-value: 3.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948291504  98 DKAQLFEAVTEDFIWEVPGAF---ELHG---FEAFYDEINEHkFDIASLEVTHNISHGKLGAVHGT---QIAQNGDSV-- 166
Cdd:COG3631   17 DVDALLALLAEDVVWEDPGGPgagTYRGkeaVRAFFARLAAA-FEDLRFEVRRVVADGDRVVVEGTvrgTVLATGKPYen 95

                         90       100
                 ....*....|....*....|....
gi 948291504 167 YFADFFEFEshskNAKVKKITSYV 190
Cdd:COG3631   96 RYADVFTVR----DGKIVRVREYF 115
PRK00254 PRK00254
ski2-like helicase; Provisional
 4-53 1.37e-04

ski2-like helicase; Provisional


Pssm-ID: 234702 [Multi-domain]  Cd Length: 720  Bit Score: 41.73  E-value: 1.37e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 948291504   4 ELPKIGRPATQALNNIGITTLEKVAQYERTALLGIHGIGPKAIETLHEAL 53
Cdd:PRK00254 649 RLPMIGRKRARALYNAGFRSIEDIVNAKPSELLKVEGIGAKIVEGIFKHL 698
HHH_5 pfam14520
Helix-hairpin-helix domain;
3-53 4.59e-04

Helix-hairpin-helix domain;


Pssm-ID: 434010 [Multi-domain]  Cd Length: 57  Bit Score: 37.08  E-value: 4.59e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 948291504    3 TELPKIGrPAT-QALNNIGITTLEKVAQYERTALLGIHGIGPKAIETLHEAL 53
Cdd:pfam14520   5 LSISGIG-PKTaLALLSAGIGTVEDLAEADVDELAEIPGIGEKTAQRIILEL 55
SnoaL_2 pfam12680
SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.
 98-175 1.61e-03

SnoaL-like domain; This family contains a large number of proteins that share the SnoaL fold.


Pssm-ID: 432716 [Multi-domain]  Cd Length: 100  Bit Score: 36.50  E-value: 1.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948291504   98 DKAQLFEAVTEDFIWEVPGAfELHGFEAFYDEINEH--KFDIASLEVTHNISHGKLGAVHGTQIAQ-----NGDSVYFAD 170
Cdd:pfam12680  12 DLDALAALFAPDAVFHDPGG-PLRGRDAIRAFFAALfaAFPDLRFEIHDVIADGDRVAVRWTVTGTipptgRGVRVRGVD 90


                  ....*
gi 948291504  171 FFEFE 175
Cdd:pfam12680  91 VFRFR 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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