|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
8-280 |
3.39e-100 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 296.19 E-value: 3.39e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 8 IVPNDTNIDFMRHRKPVLALMVALLLVSLAIIGFKGFNYALEFTGGTVVRTHFEKSVDVEAVRERLATAGFENAQVQSVG 87
Cdd:COG0341 2 LFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 88 GGNDLMIRLPPEGEhnNAADAAQKVAEKVGAAISTADNVATtqpgEFVGPQVGKDLVMNGIYATLFMVIGFLIYIAARFE 167
Cdd:COG0341 82 SDNDVLIRTPPLDG--ESAEEVEKVRAALKEAFGDVEIVRV----EFVGPTVGKELTRKALLALLVALIGILIYIAFRFE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 168 WKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAINDIIVVFDRVRENFRSLRVEPL-EVLNRSINQTLS 246
Cdd:COG0341 156 WRFAVGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLaEIINLSINQTLS 235
|
250 260 270
....*....|....*....|....*....|....
gi 948287697 247 RTVITAVLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:COG0341 236 RTINTSLTTLLVVLALLFFGGETLRDFALALLIG 269
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
43-280 |
4.46e-68 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 212.90 E-value: 4.46e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 43 GFNYALEFTGGTVVRTHFEKSVDVEAVRERLATAGFENAQVQSVGGGNDLMIRLPPEGEHNNAadaaqKVAEKVGAAIST 122
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSE-----ELREALEEALKN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 123 ADNVATTQPGEFVGPQVGKDLVMNGIYATLFMVIGFLIYIAARFEWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLA 202
Cdd:TIGR00966 76 VDPDAEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 948287697 203 GMLSVMGFAINDIIVVFDRVRENFRSLRVEPL-EVLNRSINQTLSRTVITAVLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:TIGR00966 156 ALLTIIGYSINDTVVVFDRIRENLRKYTRKTFtEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVG 234
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
7-274 |
5.08e-68 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 225.88 E-value: 5.08e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 7 HIVPNDTNIDFMRHRKPVLALMVALLLVSLAIIGFKGFNYALEFTGGTVVRTHFEKSVDVEAVRERLATAGFENAQVQSV 86
Cdd:PRK13024 441 EGVTIFDRIDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTF 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 87 GGG-NDLMIRLPPEGEHNNAADaaQKVAEKVGAAISTADNVATTQPgEFVGPQVGKDLVMNGIYATLFMVIGFLIYIAAR 165
Cdd:PRK13024 521 GSDnNQVLVRTYGILSDDEEAD--TEIVAKLKNALKNDKGGTIPSS-ETVGPTVGKELARNAIIAVLIALIGILLYILIR 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 166 FEWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAINDIIVVFDRVRENFRSLRVEPL-EVLNRSINQT 244
Cdd:PRK13024 598 FEWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLrEIVNKSINQT 677
|
250 260 270
....*....|....*....|....*....|
gi 948287697 245 LSRTVITAVLFFLSALALYLYGGESMEGLA 274
Cdd:PRK13024 678 LSRTINTSLTTLLVLLALLIFGGSSLRNFS 707
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
133-280 |
1.04e-45 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 153.53 E-value: 1.04e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 133 EFVGPQVGKDLVMNGIYATLFMVIGFLIYIAARFEWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAI 212
Cdd:pfam02355 19 ETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIGYSV 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 948287697 213 NDIIVVFDRVRENFRSLRVEPL-EVLNRSINQTLSRTVITAVLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:pfam02355 99 NDTVVVFDRVRENLRKKTRATLnEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVG 167
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
149-235 |
4.23e-04 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 42.07 E-value: 4.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 149 YATLFMVIGFLIYIAARFEWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAINDIIVVFDRVRENFRS 228
Cdd:NF037998 961 ISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAKSLISS 1040
|
....*..
gi 948287697 229 LRVEPLE 235
Cdd:NF037998 1041 KNKKELE 1047
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
8-280 |
3.39e-100 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 296.19 E-value: 3.39e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 8 IVPNDTNIDFMRHRKPVLALMVALLLVSLAIIGFKGFNYALEFTGGTVVRTHFEKSVDVEAVRERLATAGFENAQVQSVG 87
Cdd:COG0341 2 LFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTFG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 88 GGNDLMIRLPPEGEhnNAADAAQKVAEKVGAAISTADNVATtqpgEFVGPQVGKDLVMNGIYATLFMVIGFLIYIAARFE 167
Cdd:COG0341 82 SDNDVLIRTPPLDG--ESAEEVEKVRAALKEAFGDVEIVRV----EFVGPTVGKELTRKALLALLVALIGILIYIAFRFE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 168 WKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAINDIIVVFDRVRENFRSLRVEPL-EVLNRSINQTLS 246
Cdd:COG0341 156 WRFAVGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLaEIINLSINQTLS 235
|
250 260 270
....*....|....*....|....*....|....
gi 948287697 247 RTVITAVLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:COG0341 236 RTINTSLTTLLVVLALLFFGGETLRDFALALLIG 269
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
43-280 |
4.46e-68 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 212.90 E-value: 4.46e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 43 GFNYALEFTGGTVVRTHFEKSVDVEAVRERLATAGFENAQVQSVGGGNDLMIRLPPEGEHNNAadaaqKVAEKVGAAIST 122
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSE-----ELREALEEALKN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 123 ADNVATTQPGEFVGPQVGKDLVMNGIYATLFMVIGFLIYIAARFEWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLA 202
Cdd:TIGR00966 76 VDPDAEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 948287697 203 GMLSVMGFAINDIIVVFDRVRENFRSLRVEPL-EVLNRSINQTLSRTVITAVLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:TIGR00966 156 ALLTIIGYSINDTVVVFDRIRENLRKYTRKTFtEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVG 234
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
7-274 |
5.08e-68 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 225.88 E-value: 5.08e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 7 HIVPNDTNIDFMRHRKPVLALMVALLLVSLAIIGFKGFNYALEFTGGTVVRTHFEKSVDVEAVRERLATAGFENAQVQSV 86
Cdd:PRK13024 441 EGVTIFDRIDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTF 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 87 GGG-NDLMIRLPPEGEHNNAADaaQKVAEKVGAAISTADNVATTQPgEFVGPQVGKDLVMNGIYATLFMVIGFLIYIAAR 165
Cdd:PRK13024 521 GSDnNQVLVRTYGILSDDEEAD--TEIVAKLKNALKNDKGGTIPSS-ETVGPTVGKELARNAIIAVLIALIGILLYILIR 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 166 FEWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAINDIIVVFDRVRENFRSLRVEPL-EVLNRSINQT 244
Cdd:PRK13024 598 FEWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLrEIVNKSINQT 677
|
250 260 270
....*....|....*....|....*....|
gi 948287697 245 LSRTVITAVLFFLSALALYLYGGESMEGLA 274
Cdd:PRK13024 678 LSRTINTSLTTLLVLLALLIFGGSSLRNFS 707
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
9-317 |
2.19e-54 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 189.93 E-value: 2.19e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 9 VPNDTNIDFMRHRKPVLALMVALLLVSLAIIGFKGFNYALEFTGGTVVRTHFEKSV-DVEAVRERLATAGFENAQVQSVG 87
Cdd:PRK14726 541 LFEGANIRFMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQGNaDIADIRARLNELNLGEVQVERFG 620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 88 GGNDLMIRLPPEGEHNNAAdaaQKVAEKVGAAISTADNVATTqpgEFVGPQVGKDLVMNGIYATLFMVIGFLIYIAARFE 167
Cdd:PRK14726 621 SPRDALIRIASQDGGENAE---QSAVTLVRGELEDDYDFRRV---EVVGPAVSGELTMAATLGVLAALAAILIYIWIRFE 694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 168 WKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAINDIIVVFDRVRENFRSLRVEPLEVL-NRSINQTLS 246
Cdd:PRK14726 695 WQFAVGAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILiDASINQTLS 774
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 948287697 247 RTVITAVLFFLSALALYLYGGESMEGLAETHMVGAVIVVVSSIIVAVPLLSIgpFKvskqdLLPKAKDVEE 317
Cdd:PRK14726 775 RTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLIV--FK-----LRPESLDGEE 838
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
133-280 |
1.04e-45 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 153.53 E-value: 1.04e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 133 EFVGPQVGKDLVMNGIYATLFMVIGFLIYIAARFEWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAI 212
Cdd:pfam02355 19 ETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTIIGYSV 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 948287697 213 NDIIVVFDRVRENFRSLRVEPL-EVLNRSINQTLSRTVITAVLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:pfam02355 99 NDTVVVFDRVRENLRKKTRATLnEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLALLVG 167
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
35-280 |
3.77e-39 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 139.99 E-value: 3.77e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 35 SLAIIGFKGFNYALEFTGGTVVRTHFEKSVDVEAVRERLATAGFENAQVQSVGGGNDLMIRLPPEGEHNNAADAAQKVAE 114
Cdd:PRK13021 24 SLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSVISASEPGRWVLRYAPADTAQSNVDIQQALAP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 115 kvgaaISTADNVATTQpgeFVGPQVGKDLVMNGIYATLFMVIGFLIYIAARFEWKFAMVASLTAFFDLILTVAYMSLLGR 194
Cdd:PRK13021 104 -----LGTEVQVLNSS---IVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFALTQM 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 195 EFDLTVLAGMLSVMGFAINDIIVVFDRVREnfrSLRVEP----LEVLNRSINQTLSRTVITAVLFFLSALALYLYGGESM 270
Cdd:PRK13021 176 EFNLTVLAAVLAILGYSLNDSIIIADRIRE---LLIAKPklaiQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPL 252
|
250
....*....|
gi 948287697 271 EGLAETHMVG 280
Cdd:PRK13021 253 EGFSIAMFIG 262
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
134-280 |
7.05e-38 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 133.15 E-value: 7.05e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 134 FVGPQVGKDLVMNGIYATLFMVIGFLIYIAARFEWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAIN 213
Cdd:TIGR00916 36 TVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYSVD 115
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 948287697 214 DIIVVFDRVRENFRSL-RVEPLEVLNRSINQTLSRTVITAVLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:TIGR00916 116 DTVVIFDRIREELRKYkGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIG 183
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
6-296 |
3.25e-34 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 132.43 E-value: 3.25e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 6 LHIVPNDTNIDFMRHRKPVLALMVALLLVSLAIIGFKGFNYALEFTGGTVVRTHFEK-SVDVEAVRERLATAGFENAQVQ 84
Cdd:PRK13023 444 LKLVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNgDANLEDINERLAELNIDSARVL 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 85 SVGGGNDLMIRLppeGEHNNAADAAQKVAEKVGAAIstaDNVATTQPGEFVGPQVGKDLVMNGIYATLFMVIGFLIYIAA 164
Cdd:PRK13023 524 PAKSPRSALVII---GSQEVGDDAEQTVAVKLRGEF---EQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWF 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 165 RFEWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAINDIIVVFDRVRENFRSLRVEPL-EVLNRSINQ 243
Cdd:PRK13023 598 RFRWQLALGAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLpAIIDASINQ 677
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 948287697 244 TLSRTVITAVLFFLSALALYLYGGESMEGLAETHMVGAVIVVVSSIIVAVPLL 296
Cdd:PRK13023 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLL 730
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
159-307 |
4.47e-14 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 72.97 E-value: 4.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 159 LIYIAARFEWKFAMVASLTAFFDLILT----VAYMSLLGR-EFDLTVLAGMLSVMGFAINDIIVVFDRVRENFRSLRVEP 233
Cdd:PRK12911 1248 LLYVSLRFEWRYAFSAICALIHDLLATcavlVALHFFLQKiQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTP 1327
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 948287697 234 LEVL-NRSINQTLSRTVITAVLfFLSALALYLY-GGESMEGLAETHMVGAVIVVVSSIIVAVPLLSigpFKVSKQD 307
Cdd:PRK12911 1328 MPILiNDALQKTLGRTVMTTAT-TLSVLLILLFvGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLL---FMVRKEE 1399
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
135-280 |
2.56e-12 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 66.93 E-value: 2.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 135 VGPQVGKDLVMNGIYATLFMVIGFLIYIAARFEWkFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAIND 214
Cdd:TIGR01129 238 IGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL-FGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDA 316
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 948287697 215 IIVVFDRVRENFRsLRVEPLEVLNRSINQTLSRTVITAVLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:TIGR01129 317 NVLIYERIKEELR-LGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIG 381
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
135-280 |
1.02e-11 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 65.90 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 135 VGPQVGKDLVMNGIYATLFMVIG--FLIYIAARFewkFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAI 212
Cdd:PRK14726 362 VGPGLGADSIAAGLVAGLIAAILvaALMIGFYGF---LGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAV 438
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 948287697 213 NDIIVVFDRVRENFRSLRvePL-EVLNRSINQTLSRTVITAVLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:PRK14726 439 DSNVLIYERIREEEKTGH--SLiQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVG 505
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
135-280 |
1.96e-09 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 58.20 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 135 VGPQVGKDLVMNGIYATLFMVIGFLIYIAARFeWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAIND 214
Cdd:COG0342 261 VGPTLGADSIEKGLIAGLIGLLLVALFMLLYY-RLPGLVANIALALNVVLLLGVLSLLGATLTLPGIAGIILTIGMAVDA 339
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 948287697 215 IIVVFDRVRE---NFRSLRveplevlnRSINQTLSR---TVITA-VLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:COG0342 340 NVLIFERIREelrAGRSLR--------AAIEAGFKRafsTILDAnVTTLIAAVVLFVLGTGPVKGFAVTLILG 404
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
135-280 |
2.50e-08 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 54.85 E-value: 2.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 135 VGPQVGKDLVMNGIYAtlfMVIGF---LIYIAA--RFewkFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMG 209
Cdd:PRK05812 287 IGPSLGADSIRAGLIA---GLIGLalvLLFMILyyRL---FGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIG 360
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 948287697 210 FAINDIIVVFDRVRE---NFRSLRveplevlnRSINQTLSR---TVITA-VLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:PRK05812 361 MAVDANVLIFERIREelrEGRSLR--------SAIEAGFKRafsTILDSnITTLIAAIILYALGTGPVKGFAVTLGIG 430
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
35-215 |
3.41e-07 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 50.70 E-value: 3.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 35 SLAIIG------FKGFNYALEFTGGTVVrTHFEKSVDVEAVRERLATagfENAQVQSVGGGNDLMIRLPPEGehnnaADA 108
Cdd:PRK08578 27 SLLLLGgtfattGSPVKLGIDFTGGTEI-TIQTNDASPDELESALSG---EPGVDVRKGSGNGYIITFGSGD-----DTD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 109 AQKVAEKVGAAISTADNVATTQPGEFVGPQVGKDLVMNGIYATLFMVIGFLIYIAARFEW---KFAMVASltAFFDLILT 185
Cdd:PRK08578 98 VDKLADAVKEFFNVDSISELNYSEKQIGPTFGSQFQEQALKAVGFAFIGMAVVVFLIFRTpvpSLAVILS--AFSDIIIA 175
|
170 180 190
....*....|....*....|....*....|.
gi 948287697 186 VAYMSLLGREFDLTVLAGMLSVMGFAIN-DI 215
Cdd:PRK08578 176 LALMNLFGIELSLATVAALLMLIGYSVDsDI 206
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
133-280 |
6.60e-07 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 51.01 E-value: 6.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 133 EFVGPQVGKDLVMNGIYaTLFMVIGFLIYIAARFeWKFA-MVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFA 211
Cdd:PRK12911 897 EVISPELGKSQRTQGII-SVCLGLAVLIVLMSVY-YRFGgVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMA 974
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 212 INDIIVVFDRVRENFrslrvepleVLNRSINQTLSR-----------TVITAVLffLSALALYLYGGeSMEGLAETHMVG 280
Cdd:PRK12911 975 VDANVLVFERIREEY---------LLSRSLSESVEAgykkafsaifdSNLTTIL--ASALLLMLDTG-PIKGFALTLIIG 1042
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
133-280 |
1.34e-06 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 49.84 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 133 EFVGPQVGKDLVMNGIYATLFMVIGFLIYIAArFEWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAI 212
Cdd:PRK13024 254 RSVGPTLGQDAIDAGIIAGIIGFALIFLFMLV-YYGLPGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAV 332
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 948287697 213 NDIIVVFDRVRENFRSlRVEPLEVLNRSINQTLSrTV----ITAVlffLSALALYLYGGESMEGLAETHMVG 280
Cdd:PRK13024 333 DANVLIFERIKEELRK-GKSLKKAFKKGFKNAFS-TIldsnITTL---IAAAILFFFGTGPVKGFATTLIIG 399
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
135-280 |
5.15e-06 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 48.08 E-value: 5.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 135 VGPQVGKDLVMNGIYATLF--MVIGFLIYIAARFEWKFAMVASLTaffDLILTVAYMSLLGREFDLTVLAGMLSVMGFAI 212
Cdd:PRK13023 268 IASALGEDYASAAVLAALLaaLVVGLFMVLSYGILGVIALVALVV---NIIILTAVLSLIGASISLASIAGLVLTIGLAV 344
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 948287697 213 NDIIVVFDRVRENFRSlRVEPLEVLNRSINQTLSRTVITAVLFFLSALALYLYGGESMEGLAETHMVG 280
Cdd:PRK13023 345 DAHILIYERVREDRRK-GYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIG 411
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
38-64 |
1.72e-04 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 38.04 E-value: 1.72e-04
10 20
....*....|....*....|....*..
gi 948287697 38 IIGFKGFNYALEFTGGTVVRTHFEKSV 64
Cdd:pfam07549 1 SLFTRGLNLGLDFTGGTVIELQFDQPV 27
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
149-235 |
4.23e-04 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 42.07 E-value: 4.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 948287697 149 YATLFMVIGFLIYIAARFEWKFAMVASLTAFFDLILTVAYMSLLGREFDLTVLAGMLSVMGFAINDIIVVFDRVRENFRS 228
Cdd:NF037998 961 ISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAKSLISS 1040
|
....*..
gi 948287697 229 LRVEPLE 235
Cdd:NF037998 1041 KNKKELE 1047
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
40-87 |
2.37e-03 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 39.47 E-value: 2.37e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 948287697 40 GFKGFNYALEFTGGTVVRTHFEKSVD-------VEAVRERLATAGFENAQVQSVG 87
Cdd:PRK08343 36 GFTNLQYGLDLSGGSWIQLKLEGPVTqetmdlvVEILESRLNALGLKDIKVYPVG 90
|
|
| |
