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Conserved domains on  [gi|94717692|ref|YP_589078|]
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cysteine-rich protein [Ichnoviriform sonorense]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Viral_cys_rich super family cl06854
Viral cysteine rich; Members of this family are polydna viral proteins that contain a cysteine ...
 128-196 2.17e-20

Viral cysteine rich; Members of this family are polydna viral proteins that contain a cysteine rich motif. Some members of this family have multiple copies of this domain.


The actual alignment was detected with superfamily member pfam08008:

Pssm-ID: 285280  Cd Length: 83  Bit Score: 81.15  E-value: 2.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94717692   128 PEPTCMANWDYCLGFGKPCC-----------DQHSICFKFGEGICTPLHEIRNLDSYGKLIKELNSTNFDELHKKYWDPI 196
Cdd:pfam08008   1 PEPSCIDNWKPCIESTKPCCrledrtlvqfgRKEFICFRFGGGICAPLSVINNATLYAELSDQLNETNLAELSSQYWKSV 80
 
Name Accession Description Interval E-value
Viral_cys_rich pfam08008
Viral cysteine rich; Members of this family are polydna viral proteins that contain a cysteine ...
 128-196 2.17e-20

Viral cysteine rich; Members of this family are polydna viral proteins that contain a cysteine rich motif. Some members of this family have multiple copies of this domain.


Pssm-ID: 285280  Cd Length: 83  Bit Score: 81.15  E-value: 2.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94717692   128 PEPTCMANWDYCLGFGKPCC-----------DQHSICFKFGEGICTPLHEIRNLDSYGKLIKELNSTNFDELHKKYWDPI 196
Cdd:pfam08008   1 PEPSCIDNWKPCIESTKPCCrledrtlvqfgRKEFICFRFGGGICAPLSVINNATLYAELSDQLNETNLAELSSQYWKSV 80
Agouti smart00792
Agouti protein; The agouti protein regulates pigmentation in the mouse hair follicle producing ...
 121-162 3.80e-04

Agouti protein; The agouti protein regulates pigmentation in the mouse hair follicle producing a black hair with a subapical yellow band. A highly homologous protein agouti signal protein (ASIP) is present in humans and is expressed at highest levels in adipose tissue where it may play a role in energy homeostasis and possibly human pigmentation.


Pssm-ID: 197876  Cd Length: 124  Bit Score: 38.72  E-value: 3.80e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 94717692    121 VQDPAPKPEPTCMANWDYCLGFGKPCCDQHSICF-KFGEGICT 162
Cdd:smart00792  78 VLRPEPRSPRRCVRLRDSCKGPQPPCCDPCATCYcRFFNAFCY 120
 
Name Accession Description Interval E-value
Viral_cys_rich pfam08008
Viral cysteine rich; Members of this family are polydna viral proteins that contain a cysteine ...
 128-196 2.17e-20

Viral cysteine rich; Members of this family are polydna viral proteins that contain a cysteine rich motif. Some members of this family have multiple copies of this domain.


Pssm-ID: 285280  Cd Length: 83  Bit Score: 81.15  E-value: 2.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94717692   128 PEPTCMANWDYCLGFGKPCC-----------DQHSICFKFGEGICTPLHEIRNLDSYGKLIKELNSTNFDELHKKYWDPI 196
Cdd:pfam08008   1 PEPSCIDNWKPCIESTKPCCrledrtlvqfgRKEFICFRFGGGICAPLSVINNATLYAELSDQLNETNLAELSSQYWKSV 80
Agouti smart00792
Agouti protein; The agouti protein regulates pigmentation in the mouse hair follicle producing ...
 121-162 3.80e-04

Agouti protein; The agouti protein regulates pigmentation in the mouse hair follicle producing a black hair with a subapical yellow band. A highly homologous protein agouti signal protein (ASIP) is present in humans and is expressed at highest levels in adipose tissue where it may play a role in energy homeostasis and possibly human pigmentation.


Pssm-ID: 197876  Cd Length: 124  Bit Score: 38.72  E-value: 3.80e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 94717692    121 VQDPAPKPEPTCMANWDYCLGFGKPCCDQHSICF-KFGEGICT 162
Cdd:smart00792  78 VLRPEPRSPRRCVRLRDSCKGPQPPCCDPCATCYcRFFNAFCY 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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