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Conserved domains on  [gi|94490683|ref|YP_588199|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Phaethon rubricauda]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.83e-160

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 450.81  E-value: 8.83e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    1 MNPHAKLILTLSLLLGTTITISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   81 TGQWEITQLTHPTSCLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPTLLVTMAVA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  161 STALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTLKLPTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  241 NATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYYSTITLPPNSTNHMKQWHLSKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 94490683  321 TNPSIAILASLSTTLLPLSPMILATL 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.83e-160

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 450.81  E-value: 8.83e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    1 MNPHAKLILTLSLLLGTTITISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   81 TGQWEITQLTHPTSCLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPTLLVTMAVA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  161 STALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTLKLPTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  241 NATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYYSTITLPPNSTNHMKQWHLSKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 94490683  321 TNPSIAILASLSTTLLPLSPMILATL 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 21-299 4.19e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 125.23  E-value: 4.19e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  21 ISSNHWMLAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQATASTLLLF-SSMTNAwSTGQWEITQLTHPTS---- 94
Cdd:COG1007 119 ASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAagga 197

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  95 --------CLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLST---------MMKLPPITLLLLTSHSLnpTLLVTM 157
Cdd:COG1007 198 nspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATapkiaafaaLLRLLVEAFPGLAADWQ--LLLAVL 275

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683 158 AVASTALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKL----TLLTFCLYALMTATVFLALNTTNTLKLPTLMTS 233
Cdd:COG1007 276 AVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIE 355

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 94490683 234 -----WTKTPTLNATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYY 299
Cdd:COG1007 356 dlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-266 3.74e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 110.87  E-value: 3.74e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    23 SNHWMLAWTGLEINTLAIIPLI-SKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    91 HPTSCLLLTAAIAMKLGLVPFHFWFPEVLQGTSL-NTGLLLSTMMKLPPITLLLLTSHSLNPT-----LLVTMAVASTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   165 GGWMGLNQTQIRKILAFSSIAHLGWMTIIL----IYSPKLTLLTFCLYALMTATVFLA-----LNTTNTLKLPTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCagsviYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|.
gi 94490683   236 KTPTLNATLMLALLSLAGLPPLTGFLPKWLI 266
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLI 271
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 21-296 1.93e-27

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 111.96  E-value: 1.93e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    21 ISSNHWMLAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQLTHPTSC---- 95
Cdd:TIGR01770 119 VSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNgmln 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    96 --------LLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPP-------ITLLLLTSHSLNPTLLVTMAVA 160
Cdd:TIGR01770 199 isllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIFLAIIAFL 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   161 STALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKL----TLLTFCLYALMTATVFLALNTTNTLKLP-----TLM 231
Cdd:TIGR01770 279 SMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYKDEwieyiSDF 358

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 94490683   232 TSWTKT-PTLNATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRL 296
Cdd:TIGR01770 359 AGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.83e-160

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 450.81  E-value: 8.83e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    1 MNPHAKLILTLSLLLGTTITISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   81 TGQWEITQLTHPTSCLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPTLLVTMAVA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  161 STALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTLKLPTLMTSWTKTPTL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  241 NATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYYSTITLPPNSTNHMKQWHLSKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 94490683  321 TNPSIAILASLSTTLLPLSPMILATL 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 22-346 6.50e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 379.92  E-value: 6.50e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   22 SSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQLTHPTSCLLLTAA 101
Cdd:MTH00135  22 ASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLA 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  102 IAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSlNPTLLVTMAVASTALGGWMGLNQTQIRKILAF 181
Cdd:MTH00135 102 LALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAY 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  182 SSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGFL 261
Cdd:MTH00135 181 SSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFM 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  262 PKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYYSTITLPPNSTNHMKQWHL-SKPTNPSIAILASLSTTLLPLSP 340
Cdd:MTH00135 261 PKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLpSTQLTLPLAISTTATLMLLPLTP 340


                 ....*.
gi 94490683  341 MILATL 346
Cdd:MTH00135 341 AILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 2.83e-128

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 370.79  E-value: 2.83e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    1 MNPHAKLILTLSLLLGTTITISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWS 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   81 TGQWEITQLTHPTSCLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPTLLVTMAVA 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  161 STALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTLKLPTLMTSWTKTPTL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  241 NATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYYSTITLPPNSTNHMKQWHLSKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 94490683  321 TNPSIAILASLSTTLLPLSPMILATL 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-343 1.43e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 333.35  E-value: 1.43e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    1 MNPHAKLILTLSLLLGTTITISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWS 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   81 TGQWEITQLTHPTSCLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPTLLVTMAVA 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  161 STALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTLKLPTLMTSWTKTPTL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  241 NATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYYSTITLPPnSTNHMK-QWHLSK 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319

                        330       340
                 ....*....|....*....|....*
gi 94490683  320 P-TNPSIAILASLSTTLLPLSPMIL 343
Cdd:MTH00105 320 TkPMTLLPTLIILSTMLLPLTPMLS 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.95e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 289.95  E-value: 1.95e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    1 MNPHAKLILTLSLLLGTTITISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWS 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   81 TGQWEITQLTHPTSCLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPTLLVTMAVA 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  161 STALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTLKLPTLMTSWTKTPTL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  241 NATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYYSTITLPPNSTNHMKQWHLSKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 94490683  321 TNPSIAILASLSTTLLPLSPMILATL 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 21-336 3.12e-87

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 266.41  E-value: 3.12e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   21 ISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQLTHPTSCLLLTA 100
Cdd:MTH00041  21 ISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  101 AIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPTLLVTMAVASTALGGWMGLNQTQIRKILA 180
Cdd:MTH00041 101 ALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  181 FSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGF 260
Cdd:MTH00041 181 FSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGF 260

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 94490683  261 LPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYYSTITLPPNSTNHMKQWHLSKPTNPSIAILASLSTTLL 336
Cdd:MTH00041 261 LNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 21-343 3.83e-61

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 198.89  E-value: 3.83e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   21 ISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAwstgqwEITQLTHPTSCLLLTA 100
Cdd:MTH00160  22 ISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM------LNLMLFNNISSMLINS 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  101 AIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTShslNPTLLVTMAVASTALGGWMGLNQTQIRKILA 180
Cdd:MTH00160  96 SLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIIIILSAIIGAIGGLNQTSLRKILA 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  181 FSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGF 260
Cdd:MTH00160 173 YSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGF 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  261 LPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTyYSTITLPPNSTNHMKQWHlSKPTNPSIAILASLSTTLLPLSP 340
Cdd:MTH00160 253 LPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRIS-YSSLMLNYNKNKWNLKKK-KNKFSLILNFLSFISLFGLILSS 330


                 ...
gi 94490683  341 MIL 343
Cdd:MTH00160 331 LLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 21-302 2.38e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 165.44  E-value: 2.38e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   21 ISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITqlthptscLLLTA 100
Cdd:MTH00144  21 LSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLL 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  101 AIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNP-TLLVTMAVASTALGGWMGLNQTQIRKIL 179
Cdd:MTH00144  93 GLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRALL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  180 AFSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTlKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTG 259
Cdd:MTH00144 173 AYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDS-GSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFLG 251

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 94490683  260 FLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYYSTI 302
Cdd:MTH00144 252 FCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 21-340 5.82e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 161.87  E-value: 5.82e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   21 ISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSmtnawsTGQWEITQLTHPTSCLLLTA 100
Cdd:MTH00011  23 LSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALMLLV 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  101 AIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPTLLVTMAVASTALGGWMGLNQTQIRKILA 180
Cdd:MTH00011  97 SLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLA 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  181 FSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGF 260
Cdd:MTH00011 177 YSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGF 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  261 LPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTyYSTITLPPNSTNHMkqwhlSKPTNPSIAILASLSTTLLPLSP 340
Cdd:MTH00011 257 MPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLI-FNFMYLSPTFSSLK-----SAPYEPKTKILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 21-302 2.06e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 141.73  E-value: 2.06e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   21 ISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTgqweitqLTHPTSCLLLTA 100
Cdd:MTH00197  15 LSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLSLLSVVLVIL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  101 AIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHslNPTLLVTMAVASTALGGWMGLNQTQIRKILA 180
Cdd:MTH00197  88 GLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNIRQLLA 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  181 FSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTTNTLKLPTlMTSWTKTPTLN-ATLMLALLSLAGLPPLTG 259
Cdd:MTH00197 166 YSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNlVFLGLSFLSLGGLPPLSG 244

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 94490683  260 FLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYYSTI 302
Cdd:MTH00197 245 FFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 21-299 4.19e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 125.23  E-value: 4.19e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  21 ISSNHWMLAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQATASTLLLF-SSMTNAwSTGQWEITQLTHPTS---- 94
Cdd:COG1007 119 ASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAagga 197

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  95 --------CLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLST---------MMKLPPITLLLLTSHSLnpTLLVTM 157
Cdd:COG1007 198 nspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATapkiaafaaLLRLLVEAFPGLAADWQ--LLLAVL 275

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683 158 AVASTALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKL----TLLTFCLYALMTATVFLALNTTNTLKLPTLMTS 233
Cdd:COG1007 276 AVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIE 355

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 94490683 234 -----WTKTPTLNATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYY 299
Cdd:COG1007 356 dlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-266 3.74e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 110.87  E-value: 3.74e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    23 SNHWMLAWTGLEINTLAIIPLI-SKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    91 HPTSCLLLTAAIAMKLGLVPFHFWFPEVLQGTSL-NTGLLLSTMMKLPPITLLLLTSHSLNPT-----LLVTMAVASTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   165 GGWMGLNQTQIRKILAFSSIAHLGWMTIIL----IYSPKLTLLTFCLYALMTATVFLA-----LNTTNTLKLPTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCagsviYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|.
gi 94490683   236 KTPTLNATLMLALLSLAGLPPLTGFLPKWLI 266
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLI 271
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
21-299 1.08e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 112.61  E-value: 1.08e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   21 ISSNHWMLAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQLTHPTS----- 94
Cdd:PRK05777 120 VSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALAdgsgn 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   95 -------CLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLP-------PITLLLLTSHSLNPTLLVTMAVA 160
Cdd:PRK05777 200 sllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafavllrLLVVAFGGLSEDWQQVLAIIAIA 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  161 STALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKL----TLLTFCLYALMTATVFLAL--------NTTNTLKLP 228
Cdd:PRK05777 280 SMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFGVIsllrrkggEAESISDFA 359

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 94490683  229 TLmtSWTKtPTLNATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYY 299
Cdd:PRK05777 360 GL--SKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKL 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 21-296 1.93e-27

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 111.96  E-value: 1.93e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    21 ISSNHWMLAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQLTHPTSC---- 95
Cdd:TIGR01770 119 VSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNgmln 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    96 --------LLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPP-------ITLLLLTSHSLNPTLLVTMAVA 160
Cdd:TIGR01770 199 isllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIFLAIIAFL 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   161 STALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKL----TLLTFCLYALMTATVFLALNTTNTLKLP-----TLM 231
Cdd:TIGR01770 279 SMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYKDEwieyiSDF 358

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 94490683   232 TSWTKT-PTLNATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRL 296
Cdd:TIGR01770 359 AGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 21-296 1.78e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 107.81  E-value: 1.78e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   21 ISSNHWMLAWTGLEINTLAIIPLI-SKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEI------------- 86
Cdd:MTH00196  10 ISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvlnsgqsf 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   87 TQLTHPTSCLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNptLLVTMAVASTALGG 166
Cdd:MTH00196  90 SSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLFSLFVGA 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  167 WMGLNQTQIRKILAFSSIAHLGWMTIIL----IYSPKLTLLTFCLYALMTATVFLALNTTNTLK--LPTLMTSWTKTPTL 240
Cdd:MTH00196 168 IGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPIL 247

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 94490683  241 NATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRL 296
Cdd:MTH00196 248 AITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 21-296 2.44e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 103.17  E-value: 2.44e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   21 ISSNHWMLAWTGLEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEI----TQLTHPTSC 95
Cdd:MTH00199 114 VSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGK 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   96 LLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNptLLVTMAVASTALGGWMGLNQTQI 175
Cdd:MTH00199 194 ILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAIGALNQTKI 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  176 RKILAFSSIAHLGW----MTIILIYSPKLTLLTFCLYALMTATVF---LALNTTNTLKLPTLMTSwTKTPTLNATLMLAL 248
Cdd:MTH00199 272 KRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNPVIALTLALTF 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 94490683  249 LSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRL 296
Cdd:MTH00199 351 LSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-296 3.48e-24

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 102.15  E-value: 3.48e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  30 WTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQLTH----------PTSCLLLT 99
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683 100 AAIAMKLGLVPFHFWFPE-----------VLQGTSLNTGLLLstMMKLPPITLLLLTSHSLNPTLLVtMAVASTALGGWM 168
Cdd:COG0651 213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVYA--ILRVLTLLFGADPALFLGTLLLV-LGLLTMLVGALG 289

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683 169 GLNQTQIRKILAFSSIAHLGWMTI-ILIYSPklTLLTFCLY-----ALMTATVFLA----LNTTNTLKLPTLMTSWTKTP 238
Cdd:COG0651 290 ALAQRDLKRLLAYSSVSQIGYILLgLGLGTP--LGLAGALFhllnhALAKALLFLAagaiERATGTRDLDKLGGLGKRMP 367

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 94490683 239 TLNATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRL 296
Cdd:COG0651 368 LTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 21-305 1.80e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 80.29  E-value: 1.80e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   21 ISSNHWMLAWTGLEINTLAIIPLISKSHHPRAV---------EAAIKYFLVQATASTLLLFSSMTNAWSTGQ----WEIT 87
Cdd:MTH00198 205 IESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegmlGTIL 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   88 QLTHPTS----------CLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNptLLVTM 157
Cdd:MTH00198 285 SATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSK--LLLSV 362

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  158 AVASTALGGWMGLNQTQIRKILAFSSIAHLGWMTIIL-------IYSPKLTLLTFCLYALMTATVFLALNTTNTL----- 225
Cdd:MTH00198 363 AIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGTRtptsr 442

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  226 -------------KLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGL-- 290
Cdd:MTH00198 443 qrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVALFAIic 522

                        330       340
                 ....*....|....*....|..
gi 94490683  291 -----FFYLRL--TYYSTITLP 305
Cdd:MTH00198 523 tcisaFYYIRIvaTIYFNFTRP 544
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 6.08e-16

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 78.51  E-value: 6.08e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   51 RAVEAAIKYFLVQATASTLLLFS-SMTNAWSTGQWEI---------TQLTHPTSCLL----LTAAIAMKLGLVPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  117 EVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPT-------LLVTMAVASTALGGWMGLNQTQIRKILAFSSIAHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  190 MTIILI-------YSPKLTLLTFclYALMT----ATVFLALNTTNTLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLT 258
Cdd:CHL00049 319 VIIGIIvgdsndgYASMITYMLF--YIFMNlgtfACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLA 396


                 ....*
gi 94490683  259 GFLPK 263
Cdd:CHL00049 397 GFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 3.61e-14

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 73.16  E-value: 3.61e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   50 PRAVEAAIKYFLVQATASTLLLF-SSMTNAWSTGQWEITQ-----LTHPTSCLLLT-----AAIAMKLGLVPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAialalITSPSLGLALAlvfviAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  119 LQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNP-------TLLVTMAVASTALGGWMGLNQTQIRKILAFSSIAHLGWMT 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  192 IILIYSPKLTLLTFCLYalMTATVFLALNTTNTLKLPTLMTS----------WTKTPTLNATLMLALLSLAGLPPLTGFL 261
Cdd:PRK02504 317 IGLVAGTEAGYASMVFY--LLAYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLAGFF 394


                 ..
gi 94490683  262 PK 263
Cdd:PRK02504 395 GK 396
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-299 1.55e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 71.06  E-value: 1.55e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   33 LEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFS-SMTNAwSTGQWEITQLTH--PTSCLLLTA------AIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  104 MKLGLVPFHFWFPEVLQGTSLNTGLLLS----------TMMKLPPITLLLLTSHSLNPTLLVTMAVASTALGGWMGLNQT 173
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAAPPVVTALLSglvtkvavyaLIRIYFTVFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  174 QIRKILAFSSIAHLGWMTIILIYSPKLTLLTFCLY----ALMTATVFLALN----TTNTLKLPTLMTSWTKTPTLNATLM 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHllhhALMKGALFLAAGaievTYGTRRLSELSGLGRRMPLTAAAFA 373

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 94490683  246 LALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTYY 299
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYR 427
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 2.06e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 64.73  E-value: 2.06e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   33 LEINTLAIIPLIS-KSHHPRAVEAAIKYFLVQATASTLLLFS---------SMTNAWSTGQW-EITQLTHPTSCLLLTAA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMsENPTVVAKIALALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  102 IAMKLGLVPFHFWFPEVLQG--TSLNTGLLLST------MMKLPPITLLLLTSHSLNPTLLVTMAVASTALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKqaglyaLARVLFSIYGPAINLATVGWVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  174 QIRKILAFSSIAHLGWM------TIILIYSPKLTLLTFCL----------YALMTATVFLA----LNTTNTLKLPTLMTS 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYGEIAlaggiyhivnHALYKALLFLTagavIYETGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 94490683  234 WTKTPTLNATLMLALLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-298 8.69e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 63.09  E-value: 8.69e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   34 EINTLA---IIPLISKshhpRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEIT-------QLTHPTSC----LLLT 99
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFAlivfLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  100 AAIAMKLGLVPFHFWFPE-----------VLQGTSLNTG---LLLSTMMKLPPITLLLLTSHSLNPTL---LVTMAVAST 162
Cdd:PRK08668 204 AFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygFLLVLYVLPGTKLFSEFGTYRGVPLFnyiLAWLGNISI 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  163 ALGGWMGLNQTQIRKILAFSSIAHLGWmtiILIYSPKLTLLTFCL-------YALMTATVFLALNT----TNTLKLPTLM 231
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFAGglfhvfnHALFKGLFFLIFAAviyrTGTTKISEMG 360

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 94490683  232 TSWTKTPTLNATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRLTY 298
Cdd:PRK08668 361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-263 5.50e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 57.63  E-value: 5.50e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   80 STGQWEITQL-THPTSCLLLTAAIAM-------KLGLVPFHFWFPEVLQG-TSLNTGLLLSTMMKL-----PPITLLLLT 145
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAApTPVSAYLHAAAMVKAgiylvARLAPGFAD 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  146 SHSLNPTLLVtMAVASTALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPK------LTLLtfCLYALMTATVFLAL 219
Cdd:PRK12644 263 VPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVV 339

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 94490683  220 ----NTTNTLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGFLPK 263
Cdd:PRK12644 340 giidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-266 6.01e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.01  E-value: 6.01e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  38 LAIIP---LISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQW-----EITQLTHPTS-----CLLLTAAIAM 104
Cdd:COG1008 142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683 105 KLGLVPFHFWFPEVLQGTSLNTGLLLS-TMMKL-------PPITLLLLTSHSLNPtLLVTMAVASTALGGWMGLNQTQIR 176
Cdd:COG1008 222 KVPMFPFHTWLPDAHVEAPTAGSVLLAgVLLKMggygllrFALPLFPEASAYFAP-LLAALGVIGIIYGALVALAQTDLK 300

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683 177 KILAFSSIAHLGWMTI-ILIYSPK------LTLLTFclyALMTATVFLAL----NTTNTLKLPTLMTSWTKTPTLNATLM 245
Cdd:COG1008 301 RLIAYSSVSHMGFVLLgIFALNPLglqgavLQMVSH---GLITAALFLLVgvlyDRTHTRDIADLGGLAKRMPVLAALFL 377

                       250       260
                ....*....|....*....|.
gi 94490683 246 LALLSLAGLPPLTGFLPKWLI 266
Cdd:COG1008 378 LAALASLGLPGTSGFVGEFLV 398
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-266 6.07e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 57.08  E-value: 6.07e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  48 HHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQLTH-----------PTSCLLLTAAIAMKLGLVPFHFWFP 116
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilsspllTLILLLLLLGAFGKSAQFPLHFWLP 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683 117 EVLQG-TSLNTGLLLSTMMKL-PPITLLLLTSHSLNPTLLVTMAV--ASTAL-GGWMGLNQTQIRKILAFSSIAHLGWMT 191
Cdd:COG1009 236 DAMEGpTPVSALLHAATMVKAgVYLLARLSPLFALSPVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMF 315

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683 192 IIL---IYSPKLTLLTFclYALMTATVFL-------ALNTTNTLKLPTLmtsWTKTPTLNATLMLALLSLAGLPPLTGFL 261
Cdd:COG1009 316 LALgvgAYVAALFHLLT--HAFFKALLFLgagsvihATGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIPPFAGFF 390


                ....*
gi 94490683 262 PKWLI 266
Cdd:COG1009 391 SKEAI 395
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-335 6.78e-09

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 56.96  E-value: 6.78e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   34 EINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQ-----LTHPTSCLLLTAAIAMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  109 V------PFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNP--------TLLVTMAVASTALGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  175 IRKILAFSSIAHLGWMTIILIYSPKLTLLTFCLYA----LMTATVFLAL-------NTTNTLKLPTLMTSwtkTPTLNAT 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAgivsyrtKTSNLRKLGGLLPV---MPVVAFM 366

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  244 LMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSlLGLFFYLRLTYYSTITLPPNSTNHMKQWHLSKPTNP 323
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVS-IGTFVSMMKAFYLIYLKPKPEELEYKNKKVPKYAVF 445

                        330
                 ....*....|..
gi 94490683  324 SIAILASLSTTL 335
Cdd:PRK06277 446 SLAVLTILCIIL 457
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-289 1.63e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 56.08  E-value: 1.63e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  109 VPFHFWFPEVLQG-TSLNTGLLLSTMMKLPPITLLLLtshslNPTL--------LVTMAVASTAL-GGWMGLNQTQIRKI 178
Cdd:PRK12647 212 FPFHFWLPNAMEApTPVSAYLHSATMVKAGIYLLARL-----NPVLggtplwqtILPLFGGLTMLtGALLAVRQTDLKLI 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  179 LAFSSIAHLGWMTIILIYSPKLTLLTFCLY----ALMTATVFLALNT----TNTLKLPTLMTSWTKTPTLNATLMLALLS 250
Cdd:PRK12647 287 LAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALS 366

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 94490683  251 LAGLPPLTGFLPKWLITQELTkqEMTTAATIIIMLSLLG 289
Cdd:PRK12647 367 MAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 21-266 3.46e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 54.94  E-value: 3.46e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   21 ISSNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLV------QATASTLLLFSS----MTNAWSTGQW-EITQL 89
Cdd:PRK06458 125 LTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIIcsvgvaFALFGTILVYANaatvMGDGEMAILWtELLKH 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   90 THPTSCLLLTAAIAM-------KLGLVPFHFWFPE-----------VLQGTSLNTGLLLSTMMKLPPITLLLLTSHslnP 151
Cdd:PRK06458 205 ASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYILIDAAIGSDFP---G 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  152 TLLVTMAVASTALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYSPKLTLLTFCLYALMTA--------TVFLALNTTN 223
Cdd:PRK06458 282 RLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSltksaiffASGNVLQKYG 361

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 94490683  224 TLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06458 362 TRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLI 404
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-266 6.88e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.79  E-value: 6.88e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683    50 PRAVEAAIKYFLVQATASTLLLFS----SMTNAWSTGQWEITQLTHPTSC-----LLLTAAIAMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   119 ---LQGTSLNTGLLLST----MMKLPPITLLLLTSHSLnpTLLVTMAVASTALGGWMGLNQTQIRKILAFSSIAHLGWMT 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRFNLPLFPDASLYFA--PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   192 iILIYSPKLTLLTFCLYA-----LMTATVFLALNT----TNTLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGFLP 262
Cdd:TIGR01972 310 -LGIFSFNELGISGAVFQmishgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388


                  ....
gi 94490683   263 KWLI 266
Cdd:TIGR01972 389 EFLI 392
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 6.76e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 45.71  E-value: 6.76e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 94490683   291 FFYLRLTYYSTITLPPNSTNHMKQWHLSKPTN-PSIAILASLSTTLLPLSP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNtLLLPTLTTLSILLLPLTP 51
PRK12650 PRK12650
DUF4040 family protein;
28-263 1.92e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 49.66  E-value: 1.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   28 LAWtglEINTLAIIPLISKSHhPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQLTHPTSCL---LLTAAIAM 104
Cdd:PRK12650 137 VAW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAV 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  105 --------KLGLVPFHFWFPEVLQG-TSLNTGLLLSTMMKLPPITLLLLTSHSLNPT----LLVTMAVASTALGGWMGLN 171
Cdd:PRK12650 213 liavaaftKSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAvwnwLLIIVGMITALMGAVFAVQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  172 QTQIRKILAFSSIAHLGWM-TIILIYSPkltlltFCLYALMTATVFLAL-------------NTTNTLKLPTLMTSWTKT 237
Cdd:PRK12650 293 KTDLKKLTAYSTVSQLGWIvATIGVGTP------FALTAAVVHTLAHALfksslfmligvvdHQAGTRDIRRLGSLWRRM 366

                        250       260
                 ....*....|....*....|....*.
gi 94490683  238 PTLNATLMLALLSLAGLPPLTGFLPK 263
Cdd:PRK12650 367 PFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-291 3.45e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 48.57  E-value: 3.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   55 AAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQLTHPT-----SCLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLL 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  130 LSTMM-KLPPITLLLLTSHSLNP-----TLLVTMAVASTALGGWMGLNQTQIRKILAFSSIAHLG--------WMTIILI 195
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVY 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  196 YSPKLTLLTF---CLYAL----------MTA-TVFLALNTTNTLKLPTLMTSwtkTPTLNATLMLALLSLAGLPPLTGFL 261
Cdd:PRK08667 323 GLDTLALLALggaLFHSLnhalfksllfLTAgSVVHATGTRNIEKMGGLVKL---MPYTSALFLVGAVSIAALPPFNGFA 399

                        250       260       270
                 ....*....|....*....|....*....|.
gi 94490683  262 PKWLITQELTKQEMTTAATI-IIMLSLLGLF 291
Cdd:PRK08667 400 SELLLYESFFQSFSVADPLIkILLFSVLAIF 430
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 3.64e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 48.41  E-value: 3.64e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   33 LEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQLTH--PTSCLLLTAAIAMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  111 FHFWFPEVLQGTSLNTGLLLS-TMMKLPPITLLLLTSHSLNPTLLVTMAVASTAL-GGWMGLNQTQIRKILAFSSIAHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALlGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  189 WMTIILIYSPKLTLLtfclYALMTATVFL---ALNTTNTLKLPTLMT-SWTKTPtlnatLMLALLSLAGLPPLTGFLPKW 264
Cdd:PRK07234 283 FILAAPLVGGLYALA----HGLVKSTLFLcagALPSRNFTELISQMLgIGKWIP-----LTMASFSIAGFPLLAGFVSKV 353


                 ....*..
gi 94490683  265 LITQELT 271
Cdd:PRK07234 354 LTLKNLL 360
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.88e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 46.27  E-value: 1.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   33 LEINTLAIIPLISKSHHPRAVEAAIKYFLVQATASTLLLFS-----SMTNAWSTGQWEITQLTHPTS------CLLLTAA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMGDMFLIIQDLPTNraiqigVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  102 IAMKLGLVPFHFWFPEV-----------LQGTSlnTGLLLSTMMKLPPITLLLLTSHSLNP--TLLVTMAVASTALGGWM 168
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAyseapsfisvfFSGTS--TKVMIYLIIRIVYDVFKANFVFTTLPfnNVFMILAALAIVFGSVL 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  169 GLNQTQIRKILAFSSIAHLGWMTIILIYSPKLTLLTFCLYALMTATVFLALNTT--------NTLKLPTLMTSWTKTPTL 240
Cdd:PRK12662 297 AILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVsgsisyhfGTTKLEDCLNLWKSMPKI 376

                        250       260
                 ....*....|....*....|....*.
gi 94490683  241 NATLMLALLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12662 377 TLAFVLLSLSLIGMPPTSGFVAKWYI 402
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 23-295 2.01e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.29  E-value: 2.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   23 SNHWMLAWTGLEINTLAIIPLISKSHHPRAVEAAIKYFLVQATA------STLLLFSSMTNAWSTGQWEITQLTHPTSCL 96
Cdd:PRK08676 121 SDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAAHASLL 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   97 ---LLTAA-------IAMKLGLVPFHFWFPE-----------VLQGTSLNTG----LLLSTMMKLPPITLLLLTshslnp 151
Cdd:PRK08676 201 spsVLGASflfifigFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGiygiLRLSALLRQSGAAEQFSN------ 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  152 tLLVTMAVASTALGGWMGLNQTQIRKILAFSSIAHLGWMTI-ILIYSPKL---TLLTFCLYALMTATVFLA---LNTTNT 224
Cdd:PRK08676 275 -VLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLgIGIGTPLAlfwMLFHMLAHSLVKSGLFFSagiLHRQYR 353

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 94490683  225 LKLPTLMTSWTKTPTLNA-TLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLG---LFFYLR 295
Cdd:PRK08676 354 SDRFDRIFDVFRLQPVAAwGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAAssfAIFLLK 428
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-266 6.33e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 44.69  E-value: 6.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   38 LAIIPL---ISKSHHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTG-------QWEITQLTHPTSCLLLTA---AIAM 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  105 KLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPTL-------LVTMAVASTALGGWMGLNQTQIRK 177
Cdd:PRK06473 218 KIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAwvylapwLATWAVVSVLYGASCAIAQKDMKK 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  178 ILAFSSIAHLGWMTIILIYSPKLTLLTFCL----YALMTATVFLAL-------NTTNTLKLPTLMTSWTKTPTLNATLML 246
Cdd:PRK06473 298 MVAYSSIGHMGYILLAAAAATPLSILAAVFqmisHGLISALLFLLVgvvykktGSRDVDVLRGLLNPERGLPITGSLMIL 377

                        250       260
                 ....*....|....*....|
gi 94490683  247 ALLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473 378 GVMASAGIPGMVGFIAEFLV 397
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 2.87e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.89  E-value: 2.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   48 HHPRAVEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQLTHPTSCL--------------LLTAAIAMKLGLVPFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIenikghplflitliLIFIGAAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  114 WFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPT-----LLVTMAVASTALGGWMGLNQTQIRKILAFSSIAHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  189 WMTIILIYSPK------LTLLTFCL--YALMTATVFLALN-------TTNTLKLPTLMTSWTKTPTLNAtlmLALLSLAG 253
Cdd:PRK12649 316 YLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLRKEMPITFIVAS---IAALAMAG 392

                        250
                 ....*....|
gi 94490683  254 LPPLTGFLPK 263
Cdd:PRK12649 393 IPPLNGFLSK 402
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 3.92e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.01  E-value: 3.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   55 AAIKYFLVQATASTLLLFSSMTNAWSTG------QWEITQ-LTHPTSCLLLTAAI---AMKLGLVPFHFWFPEVLQGTSL 124
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGstsfdyDAISTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  125 NTGLLLSTMMKLPPITLLLLTSHSLNPTL-------LVTMAVASTALGGWMGLNQTQIRKILAFSSIAHLGWMTIILIYS 197
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFGLQLFPQTwslvapgLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  198 PKLTLLTFCL----YALMTATVF-------LALNTTNTLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGFLPKWLI 266
Cdd:PRK07363 318 TQLSLLGAVAqmisHGLILALLFhlvgiveRKVGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIV 397


                 ..
gi 94490683  267 TQ 268
Cdd:PRK07363 398 FQ 399
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-293 5.79e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.47  E-value: 5.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   53 VEAAIKYFLVQATASTLLLFSSMTNAWSTGQWEITQL-----------THPTSCLLLTAAIAMKLGLVPFhFWFPEVLQG 121
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndmgdtaTLTTIALLFLLAFGMKAALFPF-MWLPAAYHT 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  122 TSLNTGLLLSTMMKLPPITLLLLTSHSLNP-------TLLVTMAVASTALGGWMGLNQTQIRKILAFSSIAHLGWMTIIL 194
Cdd:PRK12663 236 PNTEVAALFAALLTKVGIYALIRVFTLLFPqerellhPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGL 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  195 IYSPKLTLLTFCLYAL-----MTATVFLA---LNTTNTLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12663 316 ALGTPAGINGAIFYLVhdmvvKTALFLIAgslVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395

                        250       260       270
                 ....*....|....*....|....*....|...
gi 94490683  267 TQ-ELTKQEMTTAATIII-----MLSLLGLFFY 293
Cdd:PRK12663 396 VQgALDNGAYILLALMLItslitMYSLFRIFFL 428
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 238-296 6.05e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 41.47  E-value: 6.05e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 94490683  238 PTLNATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSLLGLFFYLRL 296
Cdd:PRK07691 370 PVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-272 8.54e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 40.97  E-value: 8.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   96 LLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTM-MKLPPITLLLLTSHSLNPTL-----LVTMAVASTALGGWMG 169
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  170 LNQTQIRKILAFSSIAHLG--------WMTIILIYSPKLTLLTFC--LY-----ALMTATVFLALNT----TNTLKLPTL 230
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLVggLYhllnhSLFKSVLFLGAGSvwfrTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 94490683  231 MTSWTKTPTLNATLMLALLSLAGLPPLTGFLPKWLITQELTK 272
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 150-311 8.81e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 40.90  E-value: 8.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  150 NPTLLVTmAVASTALGGWMGLNQTQIRKILAFSSIAHLGWMTIIL-IYSPKLTLLTFCLYALMTATVFLALNTT-----N 223
Cdd:MTH00207 243 NPALLLT-ASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLgLGMPKLALFHLITHALFKALLFVCAGSLihshhH 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  224 TLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSL-LGLFFYLRLTYYSTI 302
Cdd:MTH00207 322 SQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATaLTAAYSTRFTLAVLW 401


                 ....*....
gi 94490683  303 TLPPNSTNH 311
Cdd:MTH00207 402 SPNSSSPYH 410
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-260 1.07e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 40.57  E-value: 1.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   50 PRAVEAAIKYFLVQATASTLLLFSSMT----NAWSTGQWEITQLTHPTSC--------LLLTAAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  118 VLQ-----GTSLNTGLLLST----MMKLPPITLLLLTSHSLnpTLLVTMAVASTALGGWMGLNQTQIRKILAFSSIAHLG 188
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMgaygLLRFSLPLFPDASHEFA--PIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  189 WMTIILIYSPKLTL--LTFCLYA--LMTATVFLALNT----TNTLKLPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGF 260
Cdd:PRK05846 315 FVTLGIFAGNQLGIqgAIFQMIShgLSSAALFLLVGVlydrLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGF 394
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-316 2.31e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 39.68  E-value: 2.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   95 CLLLTAAIAMKLGLVPFHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPTLLVTMAVA-----STALGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVTivgslTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  170 LNQTQIRKILAFSSIAHLGWMTIIL-IYSPKLTLLTFCLYALMTATVFL-------ALNTTNTL-KLPTLMTSWTKTPTL 240
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLsagsvihALSDEQDMrKMGGLISFLPLTYIF 372

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 94490683  241 natLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLS-LLGLFFYLRLTYYSTITLPPNSTNHMKQWH 316
Cdd:MTH00020 373 ---FLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIYLTFLSNTNLKKAVFFHLH 446
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-268 4.28e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 38.79  E-value: 4.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   92 PTSCLLLTAAI--AMKLGLvpfHFWFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPT----LLVTMAVASTAL- 164
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKApltlLIITIFGALTAFf 302

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  165 GGWMGLNQTQIRKILAFSSIAHLGWMTIILIY--SPKLTLLTFCLYALMTATVFLA----LNTTNT-----LKLPTLMTS 233
Cdd:MTH00032 303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSagsvIHSTTVdeqdmRKMGGLIHS 382

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 94490683  234 WTKTPTLnatLMLALLSLAGLPPLTGFLPKWLITQ 268
Cdd:MTH00032 383 IPFTYTM---MLIGSFSIMGLPYLTGFYSKDLILE 414
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 153-300 7.93e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 38.09  E-value: 7.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  153 LLVTMAVASTALGGWMGLNQTQIRKILAFSSIAHLGWMTIIL-IYSPKLTLLTFCLYALMTATVFLAL-----NTTNTLK 226
Cdd:MTH00209 241 SLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLgLNQPELAFFHLITHALFKALLFICAgniihSHGHSQD 320

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 94490683  227 LPTLMTSWTKTPTLNATLMLALLSLAGLPPLTGFLPKWLITQELTKQEMTTAATIIIMLSL-LGLFFYLRLTYYS 300
Cdd:MTH00209 321 IRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAYSMRLSYFS 395
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 21-270 9.02e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 37.85  E-value: 9.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   21 ISSNHWML--AWTGLEINTLAIIPLISKSHHPRAVeaaikyFLVQATASTLLLFSSMTNAWS-TGQWEITQLTHPTSCLL 97
Cdd:PRK06459  90 TSDNYLLFlaGWEIMTIPSYVAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiSGTTNFSYLPSPVPLIL 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683   98 LTAAIAMKLGLVPFHF--WFPEVLQGTSLNTGLLLSTMMKLPPITLLLLTSHSLNPT-------LLVTMAVASTALGGWM 168
Cdd:PRK06459 164 ASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIpigyfglTILAIGAFSILFGALY 243

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94490683  169 GLNQTQIRKILAFSSIAHLGWM-----TIILIYSPKLTLLTFCLYALMTAT---------VFLALNTTNTLKLPTLMTSW 234
Cdd:PRK06459 244 AYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSfahsvaktgLFLSSGLQEKQSITYSKKIR 323

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 94490683  235 TKTPTLNATLMLalLSLAGLPPLTGFLPKWLITQEL 270
Cdd:PRK06459 324 NRWIELGLTLLA--SSLSGLLPNIGGVASWLLLESL 357
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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