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Conserved domains on  [gi|94471837|gb|ABF21134|]
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cytochrome b, partial (mitochondrion) [Haematoderus militaris]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 666.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00119  49 GLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00119 129 FVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00119 209 PLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILFP 320
Cdd:MTH00119 289 LGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFP 368

                        330
                 ....*....|..
gi 94471837  321 IVGTLENKILNL 332
Cdd:MTH00119 369 LLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 666.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00119  49 GLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00119 129 FVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00119 209 PLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILFP 320
Cdd:MTH00119 289 LGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFP 368

                        330
                 ....*....|..
gi 94471837  321 IVGTLENKILNL 332
Cdd:MTH00119 369 LLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-326 3.17e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 346.39  E-value: 3.17e-118
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYlyKE----TWNTGVILLLTL 76
Cdd:COG1290  57 GIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLT 134

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  77 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIITGLAFIHLTFLHE 155
Cdd:COG1290 135 MAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHR 214

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837 156 TGSNNPLGI----TSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAY 231
Cdd:COG1290 215 HGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFY 292

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837 232 AILRSIP--NKLGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVehPFIIIGQLASI 309
Cdd:COG1290 293 GILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTV 370

                       330
                ....*....|....*..
gi 94471837 310 TYFTTLLILFPIVGTLE 326
Cdd:COG1290 371 TYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-159 1.62e-75

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 230.72  E-value: 1.62e-75
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSY--LYKETWNTGVILLLTLMA 78
Cdd:cd00284  40 GVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMA 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGS 158
Cdd:cd00284 120 TAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGS 199


                .
gi 94471837 159 N 159
Cdd:cd00284 200 S 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-157 3.37e-65

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 203.77  E-value: 3.37e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837     1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLYKETWNTGVILLLTLMA 78
Cdd:pfam00033  31 GVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMS 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94471837    79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETG 157
Cdd:pfam00033 111 TAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 191-283 6.70e-13

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 65.59  E-value: 6.70e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   191 CLMALAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLIPSL-HMSKQRTMT 269
Cdd:TIGR01156  50 CVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPF 124

                          90
                  ....*....|....*.
gi 94471837   270 FRPLSQ--FLFWTLVT 283
Cdd:TIGR01156 125 RRPVATtvFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 666.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00119  49 GLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00119 129 FVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00119 209 PLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILFP 320
Cdd:MTH00119 289 LGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFP 368

                        330
                 ....*....|..
gi 94471837  321 IVGTLENKILNL 332
Cdd:MTH00119 369 LLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-331 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 615.12  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00131  48 GLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00131 128 FVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNN 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00131 208 PLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILFP 320
Cdd:MTH00131 288 LGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMP 367

                        330
                 ....*....|.
gi 94471837  321 IVGTLENKILN 331
Cdd:MTH00131 368 LAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 609.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00100  48 GLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00100 128 FMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNN 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00100 208 PSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNK 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILFP 320
Cdd:MTH00100 288 LGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMP 367

                        330
                 ....*....|
gi 94471837  321 IVGTLENKIL 330
Cdd:MTH00100 368 IASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 591.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00074  49 GLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00074 129 FVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00074 209 PTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILFP 320
Cdd:MTH00074 289 LGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIP 368

                        330
                 ....*....|..
gi 94471837  321 IVGTLENKILNL 332
Cdd:MTH00074 369 LTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-321 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 563.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00191  45 GLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATA 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00191 125 FLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNN 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00191 205 PLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNK 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILFP 320
Cdd:MTH00191 285 LGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364


                 .
gi 94471837  321 I 321
Cdd:MTH00191 365 L 365
CYTB MTH00156
cytochrome b; Provisional
 1-319 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 549.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00156  38 GLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATA 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00156 118 FLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNN 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00156 198 PLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNK 277

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILF 319
Cdd:MTH00156 278 LGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 539.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00145  49 GLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00145 129 FLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00145 209 PLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILfP 320
Cdd:MTH00145 289 LGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-P 367

                        330
                 ....*....|
gi 94471837  321 IVGTLENKIL 330
Cdd:MTH00145 368 LVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 1-331 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 534.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00034  48 GIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00034 128 FVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNN 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00034 208 PTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNK 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILFP 320
Cdd:MTH00034 288 LGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFP 367

                        330
                 ....*....|.
gi 94471837  321 IVGTLENKILN 331
Cdd:MTH00034 368 LISYLENKLIF 378
CYTB MTH00016
cytochrome b; Validated
 1-330 1.62e-178

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 498.82  E-value: 1.62e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00016  49 GLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00016 129 FLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00016 209 PLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFtTLLILFP 320
Cdd:MTH00016 289 LGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYF-FYFMINP 367

                        330
                 ....*....|
gi 94471837  321 IVGTLENKIL 330
Cdd:MTH00016 368 LLMKLWDKLL 377
CYTB MTH00053
cytochrome b; Provisional
 1-332 2.04e-163

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 460.71  E-value: 2.04e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00053  49 GIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00053 129 FIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00053 209 PIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILFP 320
Cdd:MTH00053 289 LGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMP 368

                        330
                 ....*....|..
gi 94471837  321 IVGTLENKILNL 332
Cdd:MTH00053 369 LAGYLENKLLKL 380
CYTB MTH00022
cytochrome b; Validated
 1-331 9.22e-163

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 459.17  E-value: 9.22e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00022  47 GCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00022 127 FMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNN 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00022 207 PIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNK 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILFP 320
Cdd:MTH00022 287 LGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIP 366

                        330
                 ....*....|.
gi 94471837  321 IVGTLENKILN 331
Cdd:MTH00022 367 LLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-331 2.68e-151

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 430.11  E-value: 2.68e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00224  49 GLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATA 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00224 129 FLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNN 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00224 209 PIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNK 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  241 LGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFtTLLILFP 320
Cdd:MTH00224 289 LGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF-SYFIISP 367

                        330
                 ....*....|.
gi 94471837  321 IVGTLENKILN 331
Cdd:MTH00224 368 AISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-327 1.56e-124

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 362.33  E-value: 1.56e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00033  45 GVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTA 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00033 125 FIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNE 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLL--LFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP 238
Cdd:MTH00033 205 PLGLVGLSDRTAFHVYFTIKDILGFLILfgVFVIIGIEPRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIP 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  239 NKLGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPV-EHPFIIIGQLASITYFTTLLI 317
Cdd:MTH00033 285 NKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364

                        330
                 ....*....|
gi 94471837  318 LFPIVGTLEN 327
Cdd:MTH00033 365 LVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-326 3.17e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 346.39  E-value: 3.17e-118
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYlyKE----TWNTGVILLLTL 76
Cdd:COG1290  57 GIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLT 134

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  77 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIITGLAFIHLTFLHE 155
Cdd:COG1290 135 MAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHR 214

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837 156 TGSNNPLGI----TSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAY 231
Cdd:COG1290 215 HGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFY 292

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837 232 AILRSIP--NKLGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVehPFIIIGQLASI 309
Cdd:COG1290 293 GILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTV 370

                       330
                ....*....|....*..
gi 94471837 310 TYFTTLLILFPIVGTLE 326
Cdd:COG1290 371 TYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-319 1.14e-106

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 315.73  E-value: 1.14e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00086  37 GTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEA 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00086 117 FMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTS 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSNCDKI*FHPYFSMKDTLGFMLLLFcLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 240
Cdd:MTH00086 197 SLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNK 275

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94471837  241 LGGVLALAASVLILLLIPslhMSKQRTMTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASITYFTTLLILF 319
Cdd:MTH00086 276 VLGVIALLMSIVVFYFFI---FVNNYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-309 8.25e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 264.92  E-value: 8.25e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTGVILLLTLMATA 80
Cdd:MTH00046  39 GVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEA 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   81 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGSNN 160
Cdd:MTH00046 119 FLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSN 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  161 PLGITSN-CDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:MTH00046 199 PLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINS 278

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  240 KLGGvLALAASVLILLLIPSLHMSKqrtmTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLASI 309
Cdd:MTH00046 279 KIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV 343
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-159 1.62e-75

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 230.72  E-value: 1.62e-75
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSY--LYKETWNTGVILLLTLMA 78
Cdd:cd00284  40 GVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMA 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETGS 158
Cdd:cd00284 120 TAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGS 199


                .
gi 94471837 159 N 159
Cdd:cd00284 200 S 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-157 3.37e-65

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 203.77  E-value: 3.37e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837     1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLYKETWNTGVILLLTLMA 78
Cdd:pfam00033  31 GVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMS 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94471837    79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIITGLAFIHLTFLHETG 157
Cdd:pfam00033 111 TAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 160-307 1.23e-55

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 177.84  E-value: 1.23e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837 160 NPLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 239
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94471837 240 KLGGVLALAASVLILLLIPSLHMSKQRTmTFRPLSQFLFWTLVTNLLILTWIGSQPVEHPFIIIGQLA 307
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
211-311 2.77e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.94  E-value: 2.77e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   211 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLIPSLHMSKQRTMTFRPLSQFLFWTLVTNLLILTW 290
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 94471837   291 IGSQPVEHPFIIIGQLASITY 311
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
41-206 1.26e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 147.77  E-value: 1.26e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    41 SFFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 118
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   119 GGFSVDNPTLTRFFALHF-LLPFIITGLAFIHLTFLHETGSNNPLGITSNCDKI*FHPYFSMKDTLGFMLLLFCLMALAM 197
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 94471837   198 FSPNLLGDP 206
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-162 2.49e-29

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 112.11  E-value: 2.49e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLTLMA 78
Cdd:PRK03735  59 GMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVG 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIITGLAFIHLTFLHETG 157
Cdd:PRK03735 139 LGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQG 218


                 ....*
gi 94471837  158 SNNPL 162
Cdd:PRK03735 219 ISGPL 223
petB CHL00070
cytochrome b6
 1-162 1.32e-26

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 104.42  E-value: 1.32e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837    1 GLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLTLMA 78
Cdd:CHL00070  51 GFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVS 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   79 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIITGLAFIHLTFLHETG 157
Cdd:CHL00070 131 FGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQG 210


                 ....*
gi 94471837  158 SNNPL 162
Cdd:CHL00070 211 ISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 189-283 5.83e-15

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 71.19  E-value: 5.83e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837  189 LFCLMALAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLIPSL-HMSKQRT 267
Cdd:CHL00058  48 IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQN 122

                         90
                 ....*....|....*...
gi 94471837  268 MTFRP--LSQFLFWTLVT 283
Cdd:CHL00058 123 PFRRPvaTTVFLIGTAVA 140
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 189-283 8.65e-14

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 68.28  E-value: 8.65e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837 189 LFCLMALAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLIPSL-HMSKQRT 267
Cdd:COG5679  49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQN 123

                        90
                ....*....|....*...
gi 94471837 268 MTFRPLSQ--FLFWTLVT 283
Cdd:COG5679 124 PFRRPVATavFLFGTLVT 141
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 191-283 6.70e-13

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 65.59  E-value: 6.70e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94471837   191 CLMALAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLIPSL-HMSKQRTMT 269
Cdd:TIGR01156  50 CVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPF 124

                          90
                  ....*....|....*.
gi 94471837   270 FRPLSQ--FLFWTLVT 283
Cdd:TIGR01156 125 RRPVATtvFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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