|
Name |
Accession |
Description |
Interval |
E-value |
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1-274 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 577.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK07994 31 ALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK07994 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK07994 191 LQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAMLGTLDDDQALSLLEALVEGDGERVMALINQ 270
|
250 260 270
....*....|....*....|....*....|....
gi 944377726 241 IATLGPDFDQLHAELEGLLHRIAMAQLLPATVQE 274
Cdd:PRK07994 271 LAERGPDWEGLLVELLELLHRIAMAQLLPAALDN 304
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
1-273 |
1.05e-142 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 424.14 E-value: 1.05e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14949 31 ALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14949 111 VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK14949 191 LTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTMLGSIDEQHVIALLKALTDADIGVLMQTCAQ 270
|
250 260 270
....*....|....*....|....*....|....
gi 944377726 241 IATLGPDFDQ-LHAELEgLLHRIAMAQLLPATVQ 273
Cdd:PRK14949 271 VLAFGADAQEvLRSLLE-LLHQITLTQFAPAAAQ 303
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
1-274 |
1.77e-142 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 410.68 E-value: 1.77e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14969 31 ALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14969 111 AQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATM--AKI 238
Cdd:PRK14969 191 LEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLGAIDQDYLFALLEALLAQDGAALLaiADA 270
|
250 260 270
....*....|....*....|....*....|....*.
gi 944377726 239 TEIATLgpDFDQLHAELEGLLHRIAMAQLLPATVQE 274
Cdd:PRK14969 271 MEERSL--SFDAALQDLAALLHRLAIAQTVPDSIAD 304
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
1-269 |
1.30e-135 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 386.92 E-value: 1.30e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:TIGR02397 29 AIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:TIGR02397 109 VKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKI 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:TIGR02397 189 LDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLGLVDDEKLIELLEAILNKDTAEALKILDE 268
|
250 260
....*....|....*....|....*....
gi 944377726 241 IATLGPDFDQLHAELEGLLHRIAMAQLLP 269
Cdd:TIGR02397 269 ILESGVDPEKFLEDLIEILRDLLLIKKTP 297
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
1-270 |
2.29e-131 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 375.30 E-value: 2.29e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDA-ASRTKVEDTRELLD 79
Cdd:COG2812 25 ALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEPCGECESCRAIAAGSHPDVIEIDAeASNIGVDDIRELIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 80 NVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEW 159
Cdd:COG2812 105 KVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLLPTILSRCQRFDFRRLPPEEIAEHLAK 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 160 VLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRtdsvlamlgtldhRHLHQLLEAVLRQDAPATMAKIT 239
Cdd:COG2812 185 IAEREGIEIEPEALALIARAADGSMRDALSLLDQAIAFGLLDRR-------------ELLLDLLEALLAGDVAALLALAE 251
|
250 260 270
....*....|....*....|....*....|.
gi 944377726 240 EIATLGPDFDQLHAELEGLLHRIAMAQLLPA 270
Cdd:COG2812 252 ELAKRGRDLKRFLDDLLSLLRDLLLLKLGPD 282
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
1-272 |
3.76e-127 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 377.51 E-value: 3.76e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK08691 31 ALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLEN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK08691 111 AQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHV 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK08691 191 LDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQE 270
|
250 260 270
....*....|....*....|....*....|..
gi 944377726 241 IATLGPDFDQLHAELEGLLHRIAMAQLLPATV 272
Cdd:PRK08691 271 MAACAVGFDNALGELAILLQQLALIQAVPSAL 302
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1-274 |
2.22e-124 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 369.98 E-value: 2.22e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNC-----EQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTR 75
Cdd:PRK12323 31 ALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCtgadgEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 76 ELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAK 155
Cdd:PRK12323 111 QLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVS 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 156 QLEWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATM 235
Cdd:PRK12323 191 HLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQSYLVRLLDALAAEDGAALL 270
|
250 260 270
....*....|....*....|....*....|....*....
gi 944377726 236 AKITEIATLGPDFDQLHAELEGLLHRIAMAQLLPATVQE 274
Cdd:PRK12323 271 AIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQD 309
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
5-269 |
2.25e-122 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 353.73 E-value: 2.25e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 5 GRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYR 84
Cdd:PRK14961 35 GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 85 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWVLDQE 164
Cdd:PRK14961 115 PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKE 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 165 GQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITEIATL 244
Cdd:PRK14961 195 SIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSI 274
|
250 260
....*....|....*....|....*
gi 944377726 245 GPDFDQLHAELEGLLHRIAMAQLLP 269
Cdd:PRK14961 275 GIEWENILIEMLRFLHHISMSQSFP 299
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1-272 |
6.72e-118 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 350.94 E-value: 6.72e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNC-----EQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTR 75
Cdd:PRK14951 31 ALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCqgpdgQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQ 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 76 ELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAK 155
Cdd:PRK14951 111 QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLE 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 156 QLEWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATM 235
Cdd:PRK14951 191 HLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVV 270
|
250 260 270
....*....|....*....|....*....|....*..
gi 944377726 236 AKITEIATLGPDFDQLHAELEGLLHRIAMAQLLPATV 272
Cdd:PRK14951 271 ETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAA 307
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1-272 |
1.60e-117 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 356.08 E-value: 1.60e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK07003 31 ALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK07003 111 AVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK07003 191 LGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAAGDGPEILAVADE 270
|
250 260 270
....*....|....*....|....*....|..
gi 944377726 241 IATLGPDFDQLHAELEGLLHRIAMAQLLPATV 272
Cdd:PRK07003 271 MALRSLSFSTALQDLASLLHRIAWAQFAPASV 302
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
1-241 |
4.72e-112 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 333.76 E-value: 4.72e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK05563 31 AIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDK 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK05563 111 VKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK05563 191 LDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEE 270
|
.
gi 944377726 241 I 241
Cdd:PRK05563 271 L 271
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
1-269 |
7.16e-112 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 337.79 E-value: 7.16e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14960 30 ALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14960 110 VPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK14960 190 LEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQ 269
|
250 260
....*....|....*....|....*....
gi 944377726 241 IATLGPDFDQLHAELEGLLHRIAMAQLLP 269
Cdd:PRK14960 270 FRYQALDVSLVLDQLISTLHELALLQYLP 298
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
1-269 |
4.91e-106 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 318.99 E-value: 4.91e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14965 31 AIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELREN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14965 111 VKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK14965 191 ADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVVDRRLLLDISAAVFGRDTRALLEIVER 270
|
250 260
....*....|....*....|....*....
gi 944377726 241 IATLGPDFDQLHAELEGLLHRIAMAQLLP 269
Cdd:PRK14965 271 VDEFGYNMRQFCQELIDHLRNLVVLRAVG 299
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
1-274 |
9.13e-102 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 306.27 E-value: 9.13e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14958 31 ALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14958 111 IPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHL 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK14958 191 LKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTR 270
|
250 260 270
....*....|....*....|....*....|....
gi 944377726 241 IATLGPDFDQLHAELEGLLHRIAMAQLLPATVQE 274
Cdd:PRK14958 271 LVEQGVDFSNALADLLSLLHQIAIIQTVPEALIE 304
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
1-273 |
1.12e-100 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 306.06 E-value: 1.12e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCE-----QGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTR 75
Cdd:PRK09111 39 AFETGRIAQAFMLTGVRGVGKTTTARILARALNYEgpdgdGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIR 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 76 ELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAK 155
Cdd:PRK09111 119 EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 156 QLEWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATM 235
Cdd:PRK09111 199 HLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAAL 278
|
250 260 270
....*....|....*....|....*....|....*...
gi 944377726 236 AKITEIATLGPDFDQLHAELEGLLHRIAMAQLLPATVQ 273
Cdd:PRK09111 279 AEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAE 316
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
1-240 |
1.14e-97 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 296.18 E-value: 1.14e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK08451 29 ALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQ 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK08451 109 TKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTI 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK08451 189 LEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGLLDPSKLEDFFQAILNQDKEKLFELLKE 268
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
1-242 |
6.44e-96 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 292.37 E-value: 6.44e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14957 31 ALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14957 111 IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKII 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK14957 191 LAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKN 270
|
..
gi 944377726 241 IA 242
Cdd:PRK14957 271 LA 272
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
1-262 |
1.25e-93 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 284.41 E-value: 1.25e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14953 31 AVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14953 111 VSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK14953 191 CNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLLLESDVDEAIKFLRT 270
|
250 260
....*....|....*....|..
gi 944377726 241 IATLGPDFDQLHAELEGLLHRI 262
Cdd:PRK14953 271 LEEKGYNLNKFWKQLEEEIRNI 292
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
1-271 |
7.02e-87 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 270.14 E-value: 7.02e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGI-SSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLD 79
Cdd:PRK14950 31 AIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDpKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIE 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 80 NVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEW 159
Cdd:PRK14950 111 RVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 160 VLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKIT 239
Cdd:PRK14950 191 IAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSLLGISGDEEVKALAEALLAKDLKAALRTLN 270
|
250 260 270
....*....|....*....|....*....|..
gi 944377726 240 EIATLGPDFDQLHAElegLLHRIAMAQLLPAT 271
Cdd:PRK14950 271 AVAADGADLRQFTRD---LVEYLRQVMLLNSG 299
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
5-241 |
4.99e-80 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 249.70 E-value: 4.99e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 5 GRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYR 84
Cdd:PRK14964 32 NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 85 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWVLDQE 164
Cdd:PRK14964 112 PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKE 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 944377726 165 GQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITEI 241
Cdd:PRK14964 192 NIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVDKHILEDLVEAILLGDAQSALNVFREL 268
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
1-247 |
1.55e-79 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 251.91 E-value: 1.55e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14959 31 AAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14959 111 IGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKV 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK14959 191 LGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRE 270
|
....*..
gi 944377726 241 IATLGPD 247
Cdd:PRK14959 271 LLDRGVD 277
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
1-231 |
3.72e-78 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 246.99 E-value: 3.72e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK06647 31 SIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEE 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK06647 111 IMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKV 190
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDA 231
Cdd:PRK06647 191 CLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGLTGDEFLEKLASSILNEDA 261
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
1-247 |
5.14e-76 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 238.13 E-value: 5.14e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSH-PCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLD 79
Cdd:PRK06305 32 ALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQePCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 80 NVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEW 159
Cdd:PRK06305 112 TVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLAL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 160 VLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKIT 239
Cdd:PRK06305 192 IAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVT 271
|
....*...
gi 944377726 240 EIATLGPD 247
Cdd:PRK06305 272 DAMNSGVA 279
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
1-230 |
1.17e-75 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 241.79 E-value: 1.17e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNC--EQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELL 78
Cdd:PRK14948 31 ALISNRIAPAYLFTGPRGTGKTSSARILAKSLNClnSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELI 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 79 DNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQK-LPiTILSRCLQFHLKSLDQTQIAKQL 157
Cdd:PRK14948 111 ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRvLP-TIISRCQRFDFRRIPLEAMVQHL 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 944377726 158 EWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQaLAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQD 230
Cdd:PRK14948 190 SEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITPEAVWDLLGAVPEQDLLNLLKALASND 261
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
1-251 |
1.48e-75 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 237.74 E-value: 1.48e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14962 29 ALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14962 109 VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEV 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK14962 189 AEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDD 268
|
250
....*....|.
gi 944377726 241 IATLGPDFDQL 251
Cdd:PRK14962 269 VYYSGKDYEVL 279
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
1-235 |
1.83e-73 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 230.16 E-value: 1.83e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGIS--------SHPCGVCDTCREIDQGNFVDLLEIDAASRTKVE 72
Cdd:PRK14955 31 SLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDdadylqevTEPCGECESCRDFDAGTSLNISEFDAASNNSVD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 73 DTRELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQ 152
Cdd:PRK14955 111 DIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEE 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 153 IAKQLEWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALA-----HGNGSVRTDSVLAMLGTLDHRHLHQLLEAVL 227
Cdd:PRK14955 191 IQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAfsvesEGEGSIRYDKVAELLNYIDDEHFFAVTDAVA 270
|
....*...
gi 944377726 228 RQDAPATM 235
Cdd:PRK14955 271 DGDAVAML 278
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
1-212 |
1.69e-71 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 227.52 E-value: 1.69e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14956 33 ALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDN 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14956 113 VKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKL 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLG 212
Cdd:PRK14956 193 CKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIG 244
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
5-251 |
3.15e-71 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 232.40 E-value: 3.15e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 5 GRLHHAYLLSGTRGVGKTTIARILAKSLNCEQgiSSHPCGVCDTCREIDQGNFvDLLEIDAASRTKVEDTRELLDNVQYR 84
Cdd:PRK07133 37 NKISHAYLFSGPRGTGKTSVAKIFANALNCSH--KTDLLEPCQECIENVNNSL-DIIEMDAASNNGVDEIRELIENVKNL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 85 PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWVLDQE 164
Cdd:PRK07133 114 PTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 165 GQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITEIATL 244
Cdd:PRK07133 194 NISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQ 273
|
....*..
gi 944377726 245 GPDFDQL 251
Cdd:PRK07133 274 GIDPELL 280
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
1-249 |
9.74e-71 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 228.89 E-value: 9.74e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNC-EQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLD 79
Cdd:PRK14971 32 AIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCqNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 80 NVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEW 159
Cdd:PRK14971 112 QVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQY 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 160 VLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKIT 239
Cdd:PRK14971 192 VASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALLAGKVSDSLLLFD 271
|
250
....*....|
gi 944377726 240 EIatLGPDFD 249
Cdd:PRK14971 272 EI--LNKGFD 279
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
1-231 |
1.13e-70 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 225.87 E-value: 1.13e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCeQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14963 29 ALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14963 108 VLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRL 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGnGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDA 231
Cdd:PRK14963 188 LEAEGREAEPEALQLVARLADGAMRDAESLLERLLALG-TPVTRKQVEEALGLPPQERLRGIAAALAQGDA 257
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
1-235 |
3.50e-70 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 227.52 E-value: 3.50e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGIS--------SHPCGVCDTCREIDQGNFVDLLEIDAASRTKVE 72
Cdd:PRK14954 31 SLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDdpvylqevTEPCGECESCRDFDAGTSLNISEFDAASNNSVD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 73 DTRELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQ 152
Cdd:PRK14954 111 DIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDE 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 153 IAKQLEWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGS-----VRTDSVLAMLGTLDHRHLHQLLEAVL 227
Cdd:PRK14954 191 IQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSeaekvIAYQGVAELLNYIDDEQFFDVTDAIA 270
|
....*...
gi 944377726 228 RQDAPATM 235
Cdd:PRK14954 271 ENDAVKML 278
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
5-264 |
4.44e-70 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 224.35 E-value: 4.44e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 5 GRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSH----PCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK06645 40 DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENttikTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIES 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK06645 120 AEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYI 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHgngSVRTDSVLA------MLGTLDHRHLHQLLEAVLRQDAPAT 234
Cdd:PRK06645 200 TKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASM---SAKSDNIISpqvinqMLGLVDSSVIIEFVEYIIHRETEKA 276
|
250 260 270
....*....|....*....|....*....|...
gi 944377726 235 MAKITEIATLGPDFD---QLHAELEGLLHRIAM 264
Cdd:PRK06645 277 INLINKLYGSSVNLEifiESVSDFIAYLNKVKM 309
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1-233 |
2.26e-69 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 229.10 E-value: 2.26e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREI---DQGNfVDLLEIDAASRTKVEDTREL 77
Cdd:PRK07764 30 ALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALapgGPGS-LDVTEIDAASHGGVDDAREL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 78 LDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQL 157
Cdd:PRK07764 109 RERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYL 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 944377726 158 EWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALA-HGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPA 233
Cdd:PRK07764 189 ERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAgAGPEGVTYERAVALLGVTDSALIDEAVDALAAGDGAA 265
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
1-259 |
9.83e-69 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 223.18 E-value: 9.83e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK05896 31 AILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK05896 111 INYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK05896 191 AKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTFGLVDNNKKINLIELIQKNDIEELRNLINE 270
|
250
....*....|....*....
gi 944377726 241 IATLGPDFDQLHAELEGLL 259
Cdd:PRK05896 271 LESKGINFEAFCRDLINLL 289
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
1-247 |
1.06e-60 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 201.65 E-value: 1.06e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQ---GNfVDLLEIDAASRTKVEDTREL 77
Cdd:PRK14952 28 ALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPngpGS-IDVVELDAASHGGVDDTREL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 78 LDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQL 157
Cdd:PRK14952 107 RDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALI 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 158 EWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGS-VRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMA 236
Cdd:PRK14952 187 ARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADThVTYQRALGLLGATDVALIDDAVDALAADDAAALFG 266
|
250
....*....|.
gi 944377726 237 KITEIATLGPD 247
Cdd:PRK14952 267 AIESVIDAGHD 277
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
1-149 |
3.51e-55 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 175.48 E-value: 3.51e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRT-KVEDTRELLD 79
Cdd:pfam13177 12 SLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDLVIIEPEGQSiKIDQIRELQK 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 80 NVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLD 149
Cdd:pfam13177 92 EFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKPLS 161
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
1-272 |
1.95e-54 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 180.07 E-value: 1.95e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISShpcgvcdtcreiDQGNFVDLLEIDAASRTKVEDTRELLDN 80
Cdd:PRK14970 32 AIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDP------------NEDFSFNIFELDAASNNSVDDIRNLIDQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWV 160
Cdd:PRK14970 100 VRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGI 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 161 LDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITE 240
Cdd:PRK14970 180 AVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDLILENKIPELLLAFNE 259
|
250 260 270
....*....|....*....|....*....|..
gi 944377726 241 IATLGPDFDQLHAELEGLLHRIAMAQlLPATV 272
Cdd:PRK14970 260 ILRKGFDGHHFIAGLASHFRDLMVSK-TPATI 290
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
1-158 |
6.34e-52 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 167.80 E-value: 6.34e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDA-ASRTKVEDTRELLD 79
Cdd:TIGR00678 7 ALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDLHRLEPeGQSIKVDQVRELVE 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 944377726 80 NVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLE 158
Cdd:TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEALLQWLI 165
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
1-229 |
8.99e-52 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 170.93 E-value: 8.99e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDtCREIDQGNFVDLLEI--DAASRT-KVEDTREL 77
Cdd:COG0470 11 AAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCH-SRLMAAGNHPDLLELnpEEKSDQiGIDQIREL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 78 LDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKql 157
Cdd:COG0470 90 GEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRPPSEEEALA-- 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 944377726 158 ewVLDQEGqpFEPRALLALAKAADGSMRDALSLTdQALAHGN-------GSVRTDSVLAMLGTLDHRHLHQLLEAVLRQ 229
Cdd:COG0470 168 --WLREEG--VDEDALEAILRLAGGDPRAAINLL-QALAGRKelledlaALLSRDRALELLDALLKAEALELLDWLLKW 241
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
2-158 |
2.19e-31 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 118.49 E-value: 2.19e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 2 LDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEI--DAASrTKVEDTRELLD 79
Cdd:PRK08058 22 IAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVapDGQS-IKKDQIRYLKE 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 944377726 80 NVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLE 158
Cdd:PRK08058 101 EFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ 179
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
6-163 |
2.64e-31 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 118.43 E-value: 2.64e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 6 RLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSH-PCGVCDTCREIDQGNFVDLLEIDAASR----------TKVEDT 74
Cdd:PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHkPCGECMSCHLFGQGSHPDFYEITPLSDepengrkllqIKIDAV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 75 RELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQia 154
Cdd:PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEE-- 176
|
....*....
gi 944377726 155 kQLEWVLDQ 163
Cdd:PRK08699 177 -ALAYLRER 184
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
2-157 |
4.29e-27 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 107.10 E-value: 4.29e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 2 LDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDL--LEIDAASRT-KVEDTRELL 78
Cdd:PRK05707 16 AGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNfvLEPEEADKTiKVDQVRELV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 79 DNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQ--FHLKSLDQTQ--IA 154
Cdd:PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQqaCPLPSNEESLqwLQ 175
|
...
gi 944377726 155 KQL 157
Cdd:PRK05707 176 QAL 178
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
4-145 |
3.92e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 94.06 E-value: 3.92e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 4 QGRLHHAYLLSGTRGVGKTTIARILAKSLNCE-QGISSHPCGVCDTCREIDQGNFVD--------------LLEIDAA-- 66
Cdd:PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCEtPQPDGEPCGTCAACNWFAQGNHPDyrivrpealaaeapGAADEAKea 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 67 --------SRT-----KVEDTRELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLP 133
Cdd:PRK06964 97 dadeggkkTKApskeiKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLL 176
|
170
....*....|..
gi 944377726 134 ITILSRCLQFHL 145
Cdd:PRK06964 177 PTILSRCRQFPM 188
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
5-240 |
4.43e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 93.94 E-value: 4.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 5 GRLHHAYLLSGTRGVGKTTIARILAKSL--NCEQGISSHPCGVCD--------TCREIDQGNFVDLLEI-----DAASRT 69
Cdd:PRK07471 38 GRLHHAWLIGGPQGIGKATLAYRMARFLlaTPPPGGDGAVPPPTSlaidpdhpVARRIAAGAHGGLLTLerswnEKGKRL 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 70 K----VEDTRELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHL 145
Cdd:PRK07471 118 RtvitVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 146 KSLDQTQIAKqlewVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQ-ALA-HGngsvRTDSVLAMLGTLDHRHLHQLL 223
Cdd:PRK07471 198 RPLAPEDVID----ALAAAGPDLPDDPRAALAALAEGSVGRALRLAGGdGLAlYR----RLTALLDTLPRLDRRALHALA 269
|
250
....*....|....*..
gi 944377726 224 EAVLRQDAPATMAKITE 240
Cdd:PRK07471 270 DAAAGRDRAARFALFLD 286
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
9-157 |
4.72e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 94.21 E-value: 4.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 9 HAYLLSGTRGVGKTTIARILAKSLNCEQgISSHPCGVCDTCREIDQGNFVDLLEIdaasRTK-----VEDTRELLDNVQY 83
Cdd:PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCTD-PDEPGCGECRACRTVLAGTHPDVRVV----APEglsigVDEVRELVTIAAR 111
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 944377726 84 RPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQL 157
Cdd:PRK07940 112 RPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVL 185
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
1-163 |
2.66e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 91.33 E-value: 2.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIdAASRTK---VEDTREL 77
Cdd:PRK06871 17 AFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL-EPIDNKdigVDQVREI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 78 LDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRClQFHLKSLDQTQIAkqL 157
Cdd:PRK06871 96 NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQA--L 172
|
....*.
gi 944377726 158 EWVLDQ 163
Cdd:PRK06871 173 DWLQAQ 178
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
2-146 |
2.42e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 88.15 E-value: 2.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 2 LDQGRLHHAYLLSGtrGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRT-KVEDTRELLDN 80
Cdd:PRK07276 18 LEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQViKTDTIRELVKN 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLK 146
Cdd:PRK07276 96 FSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFP 161
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
1-164 |
5.81e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 84.57 E-value: 5.81e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLnceqgISSHPCGVCDTCReIDQGNFVDLLEI--------------DAA 66
Cdd:PRK07399 19 AIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL-----LSQGSPSKNIRRR-LEEGNHPDLLWVeptyqhqgklitasEAE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 67 SRT---------KVEDTRELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVkFLLATTDPQKLPITIL 137
Cdd:PRK07399 93 EAGlkrkappqiRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGT-LILIAPSPESLLPTIV 171
|
170 180
....*....|....*....|....*..
gi 944377726 138 SRCLQFHLKSLDQTQIAKQLEWVLDQE 164
Cdd:PRK07399 172 SRCQIIPFYRLSDEQLEQVLKRLGDEE 198
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
1-191 |
2.90e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 83.16 E-value: 2.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCD------TCREIDQGNFVDLLEIDAA--SRTK-- 70
Cdd:PRK09112 38 AYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADpdpaspVWRQIAQGAHPNLLHITRPfdEKTGkf 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 71 -----VEDTRELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHL 145
Cdd:PRK09112 118 ktaitVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISL 197
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 944377726 146 KSLDQTQIAKQLEWVldQEGQPFEPRALLALAKAADGSMRDALSLT 191
Cdd:PRK09112 198 KPLDDDELKKALSHL--GSSQGSDGEITEALLQRSKGSVRKALLLL 241
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
4-152 |
9.72e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 81.65 E-value: 9.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 4 QGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCGVCDTCREIDQGNFVD---LLEIDAASRTKVEDTRELLDN 80
Cdd:PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDyytLTPEKGKSSLGVDAVREVTEK 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 944377726 81 VQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQ 152
Cdd:PRK07993 100 LYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQY 171
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
1-165 |
6.43e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 79.08 E-value: 6.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCeQGISSHPCGVCDTCREIDQGNFVDLLEIDAASRTK---VEDTREL 77
Cdd:PRK06090 18 GLDAGRIPGALLLQSDEGLGVESLVELFSRALLC-QNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKsitVEQIRQC 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 78 LDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFhlkSLDQTQIAKQL 157
Cdd:PRK06090 97 NRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW---VVTPPSTAQAM 173
|
....*...
gi 944377726 158 EWvLDQEG 165
Cdd:PRK06090 174 QW-LKGQG 180
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
1-163 |
2.51e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 77.31 E-value: 2.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAYLLSGTRGVGKTTIARILAKSLnceQGISSHPCGVCDTCREIDQGNFVDLLEID-AASRTK--------V 71
Cdd:PRK08769 19 ALDAGRLGHGLLICGPEGLGKRAVALALAEHV---LASGPDPAAAQRTRQLIAAGTHPDLQLVSfIPNRTGdklrteivI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 72 EDTRELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRC--LQFHLKSLD 149
Cdd:PRK08769 96 EQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCqrLEFKLPPAH 175
|
170
....*....|....
gi 944377726 150 QTqiakqLEWVLDQ 163
Cdd:PRK08769 176 EA-----LAWLLAQ 184
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
148-212 |
2.30e-15 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 69.07 E-value: 2.30e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 944377726 148 LDQTQIAKQLEWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHGNGSVRTDSVLAMLG 212
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
2-158 |
3.28e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 71.22 E-value: 3.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 2 LDQGRLHHAYLLSGTRGVGKTTIARILA-KSLNCEQgisshpcgvcdtcreidQGNFVDLLE--IDAASRTKVEDTRELL 78
Cdd:PRK05564 20 IIKNRFSHAHIIVGEDGIGKSLLAKEIAlKILGKSQ-----------------QREYVDIIEfkPINKKSIGVDDIRNII 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 79 DNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLE 158
Cdd:PRK05564 83 EEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFIS 162
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
1-215 |
6.71e-14 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 70.88 E-value: 6.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAyLLSGTRGVGKTTIARILAKSLNCEqgisshpcgvcdtcreidqgnFVdllEIDAASrTKVEDTRELLDN 80
Cdd:PRK13342 30 MIEAGRLSSM-ILWGPPGTGKTTLARIIAGATDAP---------------------FE---ALSAVT-SGVKDLREVIEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHmlsRhsFN-----ALLktleeppPYV---KFLL--ATTD-------PQklpitILSRCLQF 143
Cdd:PRK13342 84 ARQRRSAGRRTILFIDEIH---R--FNkaqqdALL-------PHVedgTITLigATTEnpsfevnPA-----LLSRAQVF 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 944377726 144 HLKSLDQTQIAKQLEWVLDQEGqpfeprallalakaadgsmRDALSLTDQALAH----GNGSVRtdsvlAMLGTLD 215
Cdd:PRK13342 147 ELKPLSEEDIEQLLKRALEDKE-------------------RGLVELDDEALDAlarlANGDAR-----RALNLLE 198
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
71-156 |
7.52e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 69.82 E-value: 7.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 71 VEDTRELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQ 150
Cdd:PRK05917 77 IETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEEK 156
|
....*.
gi 944377726 151 TQIAKQ 156
Cdd:PRK05917 157 TLVSKE 162
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
1-233 |
1.27e-12 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 66.94 E-value: 1.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHaYLLSGTRGVGKTTIARILAKSLNCEQGisshpcgvcdtcreidQGNFVDLLEIDAASRTK---VEDTR-- 75
Cdd:PRK12402 30 AVDSPNLPH-LLVQGPPGSGKTAAVRALARELYGDPW----------------ENNFTEFNVADFFDQGKkylVEDPRfa 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 76 -----------ELLDNVQ--------YRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITI 136
Cdd:PRK12402 93 hflgtdkrirsSKIDNFKhvlkeyasYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 137 LSRCLQFHLKSLDQTQIAKQLEWVLDQEGQPFEPRALLALAKAADGSMRDALsLTDQALAHGNGSVRTDSVLAMLGTLDH 216
Cdd:PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI-LTLQTAALAAGEITMEAAYEALGDVGT 251
|
250
....*....|....*...
gi 944377726 217 RH-LHQLLEAVLRQDAPA 233
Cdd:PRK12402 252 DEvIESLLDAAEAGDFTD 269
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
30-158 |
6.86e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 61.00 E-value: 6.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 30 KSLNCEQGISshPCGVCDTCREIDQGNFVDLLEI-DAASRTKVEDTRELLD--NVQYRPARGRfKVYLIDEVHMLSRHSF 106
Cdd:PRK05818 29 TSIVCTKANG--FCKTCESCLKILNGKYNDFYLIfDQKNPIKKEDALSIINklNRPSVESNGK-KIYIIYGIEKLNKQSA 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 944377726 107 NALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSlDQTQIAKQLE 158
Cdd:PRK05818 106 NSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLS-KEKKVPFKVE 156
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
11-140 |
1.03e-10 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 57.99 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 11 YLLSGTRGVGKTTIARILAKSLNCEqgisshpcgvcdtCREIDQGNFVDLLEIDAASRtkvedTRELLDNVQyrpaRGRF 90
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAP-------------FIEISGSELVSKYVGESEKR-----LRELFEAAK----KLAP 58
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 944377726 91 KVYLIDEVHMLSRHSF-----------NALLKTLEEP---PPYVKFLLATTDPQKLPITILSRC 140
Cdd:pfam00004 59 CVIFIDEIDALAGSRGsggdsesrrvvNQLLTELDGFtssNSKVIVIAATNRPDKLDPALLGRF 122
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
4-157 |
1.94e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 60.12 E-value: 1.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 4 QGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQGISSHPCgvcDTCREIdqgNFVDLLEiDAASRTKVEDTRELLDNVQY 83
Cdd:PRK07132 14 QNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQ---ELPANI---ILFDIFD-KDLSKSEFLSAINKLYFSSF 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 944377726 84 rpARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQL 157
Cdd:PRK07132 87 --VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
2-171 |
3.85e-10 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 59.23 E-value: 3.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 2 LDQGRLHHAYLLSGTRGVGKTTIARILAKSLNCEQG-ISSHPCGVcDTCREidqgnfvdllEIDAASRTKVEDtrelldn 80
Cdd:PHA02544 37 VKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLfVNGSDCRI-DFVRN----------RLTRFASTVSLT------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 vqyrparGRFKVYLIDEVHMLSRHSFNALLKTL-EEPPPYVKFLLATTDPQKLPITILSRCLQFHL---KSLDQTQIAKQ 156
Cdd:PHA02544 99 -------GGGKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFgvpTKEEQIEMMKQ 171
|
170
....*....|....*....
gi 944377726 157 L----EWVLDQEGQPFEPR 171
Cdd:PHA02544 172 MivrcKGILEAEGVEVDMK 190
|
|
| DNA_pol3_gamma3 |
pfam12169 |
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, ... |
202-270 |
9.17e-10 |
|
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau.
Pssm-ID: 432379 [Multi-domain] Cd Length: 143 Bit Score: 55.74 E-value: 9.17e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 944377726 202 VRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITEIATLGPDFDQLHAELEGLLHRIAMAQLLPA 270
Cdd:pfam12169 1 VTAAQVRDMLGLADRGRVLDLLEALLEGDAAAALAELRDQYDAGADPVVVLRDLLELIHNLTRLKVAPD 69
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
11-140 |
1.11e-09 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 56.00 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 11 YLLSGTRGVGKTTIARILAKSLNceqgisshpcgvcdtcreidqGNFVDLLEIDAASRTKVEDTRELLDNVQYRPARGRF 90
Cdd:cd00009 22 LLLYGPPGTGKTTLARAIANELF---------------------RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 944377726 91 K-----VYLIDEVHMLSRHSFNALLKTLEEPPPY------VKFLLATTDP--QKLPITILSRC 140
Cdd:cd00009 81 EkakpgVLFIDEIDSLSRGAQNALLRVLETLNDLridrenVRVIGATNRPllGDLDRALYDRL 143
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
1-197 |
3.39e-09 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 56.99 E-value: 3.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 1 ALDQGRLHHAyLLSGTRGVGKTTIARILAKSLNCEqgisshpcgvcdtcreidqgnFVDLleidAASRTKVEDTRELLDN 80
Cdd:COG2256 43 AIEAGRLSSM-ILWGPPGTGKTTLARLIANATDAE---------------------FVAL----SAVTSGVKDIREVIEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 81 VQYRPARGRFKVYLIDEVHmlsRhsFN-----ALLktleeppPYV---KFLL--ATTD--------PqklpitILSRCLQ 142
Cdd:COG2256 97 ARERRAYGRRTILFVDEIH---R--FNkaqqdALL-------PHVedgTITLigATTEnpsfevnsA------LLSRCRV 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 944377726 143 FHLKSLDQTQIAKQLEWVLDQEGQpfeprallalakaadGSMRDALSLTDQALAH 197
Cdd:COG2256 159 FVLKPLSEEDLEQLLERALADDER---------------GLGGYKLELDDEALEA 198
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
59-196 |
1.27e-08 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 55.62 E-value: 1.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 59 DLLEIDAASRTKVEDTRELL-DNVQYRPARG-RFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITI 136
Cdd:PRK04132 598 NFLELNASDERGINVIREKVkEFARTKPIGGaSFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 677
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 137 LSRCLQFHLKSLDQTQIAKQLEWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALA 196
Cdd:PRK04132 678 QSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAA 737
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
12-255 |
3.05e-08 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 53.72 E-value: 3.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 12 LLSGTRGVGKTTIARILAKSLnceqgisshpcgVCDTCREidqgNFvdlLEIDAAS-------RTKVEDTrelldnvqyr 84
Cdd:PRK00440 42 LFAGPPGTGKTTAALALAREL------------YGEDWRE----NF---LELNASDergidviRNKIKEF---------- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 85 pARGR------FKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLE 158
Cdd:PRK00440 93 -ARTApvggapFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 159 WVLDQEGQPFEPRALLALAKAADGSMRDALSLTdQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKI 238
Cdd:PRK00440 172 YIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAVYKITGTARPEEIREMIELALNGDFTEAREKL 250
|
250 260
....*....|....*....|..
gi 944377726 239 TEIATL----GPDF-DQLHAEL 255
Cdd:PRK00440 251 RDLMIDyglsGEDIiKQIHREV 272
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
86-245 |
5.25e-07 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 50.11 E-value: 5.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 86 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHLKSLDQTQIAKQLEWVLDQEG 165
Cdd:PLN03025 96 PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEK 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 166 QPFEPRALLALAKAADGSMRDALSlTDQALAHGNGSVRTDSVLAMLGTLDHRHLHQLLEAVLRQDAPATMAKITEIATLG 245
Cdd:PLN03025 176 VPYVPEGLEAIIFTADGDMRQALN-NLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLG 254
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
8-145 |
9.10e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 47.37 E-value: 9.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 8 HHAYLLSGTRGVGKTTIARILAKSLNCEQGisshPCGVCDtCREIDQGNFVDLLEIDAASRTKVEDTRELLDNVQYRPAR 87
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGG----GVIYID-GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 944377726 88 GRFKVYLIDEVHMLSRHSFNALL--------KTLEEPPPYVKFLLATTDPQKLPITILSRCLQFHL 145
Cdd:smart00382 77 LKPDVLILDEITSLLDAEQEALLllleelrlLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRI 142
|
|
| AAA_14 |
pfam13173 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
8-125 |
2.08e-06 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 463799 [Multi-domain] Cd Length: 128 Bit Score: 46.04 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 8 HHAYLLSGTRGVGKTTIARILAKSLNCEQGIsshpcgvcdtcreidqgNFVDLLEIDAASRTKVEDTRELLDNVQYRPar 87
Cdd:pfam13173 2 RKILVITGPRQVGKTTLLLQLIKELLPPENI-----------------LYINLDDPRLLKLADFELLELFLELLYPGK-- 62
|
90 100 110
....*....|....*....|....*....|....*...
gi 944377726 88 grfKVYLIDEVHMLSRhsFNALLKTLEEPPPYVKFLLA 125
Cdd:pfam13173 63 ---TYLFLDEIQRVPD--WELALKRLYDDGPNGRVILT 95
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
148-211 |
1.12e-05 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 42.46 E-value: 1.12e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 944377726 148 LDQTQIAKQLEWVLDQEGQPFEPRALLALAKAADGSMRDALSLTDQALAHG-NGSVRTDSVLAML 211
Cdd:cd18133 1 LDQEQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAALGdDGKISLDRVYQAV 65
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
107-167 |
1.39e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 45.02 E-value: 1.39e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 944377726 107 NALLKTLEEPPPYVKFLLATTDPQKLPITILSRC-------------LQFHLKSLDQTQIAKQLEWvLDQEGQP 167
Cdd:PRK08485 72 NALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLiiekrkqkkpvkpLDLDLKKLDLKDIYEFLKE-LEKENKL 144
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
62-147 |
3.67e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 44.07 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 62 EIDAASRTK---VEDTRELLDNVQYRPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPPYVKFLLATTDPQKLPITILS 138
Cdd:PRK06581 59 ETSATSNAKnisIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRS 138
|
....*....
gi 944377726 139 RCLQFHLKS 147
Cdd:PRK06581 139 RCFKINVRS 147
|
|
| AAA_18 |
pfam13238 |
AAA domain; |
12-99 |
4.95e-05 |
|
AAA domain;
Pssm-ID: 433052 [Multi-domain] Cd Length: 128 Bit Score: 42.03 E-value: 4.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 12 LLSGTRGVGKTTIARILAKSLNCEqgisshpcgvcDTCREIDQGNFVDLLEIDAASRTKVEDTR---ELLDNVQYRPARG 88
Cdd:pfam13238 2 LITGTPGVGKTTLAKELSKRLGFG-----------DNVRDLALENGLVLGDDPETRESKRLDEDkldRLLDLLEENAALE 70
|
90
....*....|.
gi 944377726 89 RFKVYLIDEVH 99
Cdd:pfam13238 71 EGGNLIIDGHL 81
|
|
| Fap7 |
COG1936 |
Broad-specificity NMP kinase [Nucleotide transport and metabolism]; |
12-35 |
3.19e-04 |
|
Broad-specificity NMP kinase [Nucleotide transport and metabolism];
Pssm-ID: 441539 [Multi-domain] Cd Length: 173 Bit Score: 40.57 E-value: 3.19e-04
10 20
....*....|....*....|....
gi 944377726 12 LLSGTRGVGKTTIARILAKSLNCE 35
Cdd:COG1936 4 AITGTPGTGKTTVAKLLAERLGLE 27
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
8-125 |
5.48e-04 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 41.08 E-value: 5.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 8 HHAYLLSGTRGVGKTTIARILAKSLnceqgisshpcgvcdtcreiDQGNFVDlLEIDAASRTKVEDTRELLDnvQYRPAR 87
Cdd:COG1373 20 RKAVVITGPRQVGKTTLLKQLAKEL--------------------ENILYIN-LDDPRLRALAEEDPDDLLE--ALKELY 76
|
90 100 110
....*....|....*....|....*....|....*...
gi 944377726 88 GRFKVYLIDEVHMLsRHSFNALLKTLEEPPPYvKFLLA 125
Cdd:COG1373 77 PGKTYLFLDEIQRV-PEWEDALKRLVDDGRNG-RFILT 112
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
12-165 |
2.12e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 38.62 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 12 LLSGTRGVGKTTIARILAKSL--NCEQGISSHPcgvcdtcreidQGNFVDLLE-------IDAASRTKVEDTRELLDNVQ 82
Cdd:COG3267 47 VLTGEVGTGKTTLLRRLLERLpdDVKVAYIPNP-----------QLSPAELLRaiadelgLEPKGASKADLLRQLQEFLL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 83 YRPARGRFKVYLIDEVHMLSRhsfnallKTLEEpppyVKFLLA-TTDPQKLPITIL-------------------SRC-L 141
Cdd:COG3267 116 ELAAAGRRVVLIIDEAQNLPP-------ETLEE----LRLLSNlETDSRKLLQIVLvgqpelrerlarpelrqlrQRItA 184
|
170 180
....*....|....*....|....
gi 944377726 142 QFHLKSLDQTQIAKQLEWVLDQEG 165
Cdd:COG3267 185 RYHLRPLDREETAAYIEHRLKVAG 208
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
12-156 |
2.67e-03 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 38.88 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 12 LLSGTRGVGKTTIARILAKSLNCEqgisshpcgvcdtcreidqgnFVDLleidAASRTKVEDTRELLDNVQYRPARGRFK 91
Cdd:PRK13341 56 ILYGPPGVGKTTLARIIANHTRAH---------------------FSSL----NAVLAGVKDLRAEVDRAKERLERHGKR 110
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 944377726 92 VYL-IDEVHMLSRHSFNALLKTLEEPPpyVKFLLATTDPQKLPI--TILSRCLQFHLKSL---DQTQIAKQ 156
Cdd:PRK13341 111 TILfIDEVHRFNKAQQDALLPWVENGT--ITLIGATTENPYFEVnkALVSRSRLFRLKSLsdeDLHQLLKR 179
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
12-110 |
3.18e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 36.94 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944377726 12 LLSGTRGVGKTTIARILAKSLNCEQGIS-----SHPCGVCDTCREIdqgnFVDLLEIDAASRTKVEDTRELLDNVQyrpA 86
Cdd:pfam13401 9 VLTGESGTGKTTLLRRLLEQLPEVRDSVvfvdlPSGTSPKDLLRAL----LRALGLPLSGRLSKEELLAALQQLLL---A 81
|
90 100
....*....|....*....|....
gi 944377726 87 RGRFKVYLIDEVHMLSRHSFNALL 110
Cdd:pfam13401 82 LAVAVVLIIDEAQHLSLEALEELR 105
|
|
| SK |
cd00464 |
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ... |
15-35 |
3.40e-03 |
|
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Pssm-ID: 238260 [Multi-domain] Cd Length: 154 Bit Score: 37.15 E-value: 3.40e-03
|
| PRK03839 |
PRK03839 |
putative kinase; Provisional |
13-35 |
4.66e-03 |
|
putative kinase; Provisional
Pssm-ID: 179660 Cd Length: 180 Bit Score: 37.01 E-value: 4.66e-03
|
| |
