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Conserved domains on  [gi|943511706|gb|ALL53162|]
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cytochrome b, partial (mitochondrion) [Liocichla phoenicea]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-120 8.06e-93

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 272.93  E-value: 8.06e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00119  73 DVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLS 152

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00119 153 AIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAG 192
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-120 8.06e-93

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 272.93  E-value: 8.06e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00119  73 DVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLS 152

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00119 153 AIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAG 192
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-120 2.23e-56

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 174.09  E-value: 2.23e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLN--KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNL 78
Cdd:cd00284   64 DVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNL 143

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 943511706  79 FSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:cd00284  144 FSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAV 185
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-120 1.88e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 167.27  E-value: 1.88e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-----LNketWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVI 75
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVI 157

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 943511706  76 TNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-FLLPFVIAG 120
Cdd:COG1290  158 TGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLA 203
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-120 1.33e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.39  E-value: 1.33e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706    2 VQYGWLIRNLHANGASFFFICIYFHIGRGIYYG--SYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLF 79
Cdd:pfam00033  56 VNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLL 135

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 943511706   80 SAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:pfam00033 136 SAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAI 176
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-120 8.06e-93

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 272.93  E-value: 8.06e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00119  73 DVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLS 152

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00119 153 AIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAG 192
CYTB MTH00131
cytochrome b; Provisional
 1-120 4.65e-84

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 250.34  E-value: 4.65e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00131  72 DVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLS 151

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00131 152 AVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAA 191
CYTB MTH00156
cytochrome b; Provisional
 1-120 2.50e-82

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 245.08  E-value: 2.50e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00156  62 DVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLS 141

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00156 142 AIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILA 181
CYTB MTH00100
cytochrome b; Provisional
 1-119 1.21e-81

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 244.16  E-value: 1.21e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00100  72 DVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLS 151

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIA 119
Cdd:MTH00100 152 AIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIIT 190
CYTB MTH00074
cytochrome b; Provisional
 1-120 5.71e-81

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 242.66  E-value: 5.71e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00074  73 DVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLS 152

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00074 153 AIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAG 192
CYTB MTH00191
cytochrome b; Provisional
 2-120 1.30e-79

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 238.66  E-value: 1.30e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   2 VQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSA 81
Cdd:MTH00191  70 VNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSA 149

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 943511706  82 IPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00191 150 IPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAA 188
CYTB MTH00145
cytochrome b; Provisional
 1-120 1.82e-78

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 236.34  E-value: 1.82e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00145  73 DVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLS 152

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00145 153 AIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILG 192
CYTB MTH00016
cytochrome b; Validated
 1-120 1.25e-75

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 228.79  E-value: 1.25e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00016  73 DVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLS 152

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00016 153 AIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAA 192
CYTB MTH00034
cytochrome b; Validated
 1-119 1.16e-73

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 223.81  E-value: 1.16e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00034  72 DVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVS 151

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIA 119
Cdd:MTH00034 152 AVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIA 190
CYTB MTH00224
cytochrome b; Provisional
 1-133 1.09e-61

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 193.21  E-value: 1.09e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00224  73 DVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFS 152

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAGLTLVHLTLLHDTG 133
Cdd:MTH00224 153 AIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTG 205
CYTB MTH00022
cytochrome b; Validated
 1-120 8.09e-60

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 188.37  E-value: 8.09e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00022  71 DVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLS 150

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00022 151 AIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAF 190
CYTB MTH00053
cytochrome b; Provisional
 1-120 6.11e-58

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 183.75  E-value: 6.11e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00053  73 DVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLS 152

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00053 153 AIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAG 192
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-120 2.23e-56

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 174.09  E-value: 2.23e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLN--KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNL 78
Cdd:cd00284   64 DVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNL 143

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 943511706  79 FSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:cd00284  144 FSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAV 185
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-120 1.88e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 167.27  E-value: 1.88e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-----LNketWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVI 75
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVI 157

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 943511706  76 TNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-FLLPFVIAG 120
Cdd:COG1290  158 TGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLA 203
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-120 1.33e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.39  E-value: 1.33e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706    2 VQYGWLIRNLHANGASFFFICIYFHIGRGIYYG--SYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLF 79
Cdd:pfam00033  56 VNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLL 135

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 943511706   80 SAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:pfam00033 136 SAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAI 176
CYTB MTH00033
cytochrome b; Provisional
 1-120 3.32e-47

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 156.25  E-value: 3.32e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFS 80
Cdd:MTH00033  69 DVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVS 148

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 943511706  81 AIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00033 149 AIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVG 188
CYTB MTH00086
cytochrome b; Provisional
 2-118 8.10e-44

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 146.62  E-value: 8.10e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   2 VQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSA 81
Cdd:MTH00086  62 VNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSV 141

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 943511706  82 IPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 118
Cdd:MTH00086 142 IPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGL 178
CYTB MTH00046
cytochrome b; Validated
 4-120 9.64e-36

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 125.48  E-value: 9.64e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   4 YGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIP 83
Cdd:MTH00046  66 FTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVP 145

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 943511706  84 YIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIAG 120
Cdd:MTH00046 146 IVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILG 182
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
17-120 5.32e-28

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 100.78  E-value: 5.32e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   17 SFFFICIYFHIGRGIYYGSYLNKE--TWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLW 94
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100
                  ....*....|....*....|....*..
gi 943511706   95 GGFSVDNPTLTRFFAIHF-LLPFVIAG 120
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILA 107
PRK03735 PRK03735
cytochrome b6; Provisional
 2-120 1.47e-23

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 90.93  E-value: 1.47e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   2 VQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKE--TWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLF 79
Cdd:PRK03735  84 VAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIA 163

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 943511706  80 SAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-FLLPFVIAG 120
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAV 205
petB CHL00070
cytochrome b6
 1-119 4.75e-21

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 84.00  E-value: 4.75e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943511706   1 NVQYGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKE--TWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNL 78
Cdd:CHL00070  75 EVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGV 154

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 943511706  79 FSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-FLLPFVIA 119
Cdd:CHL00070 155 PEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTA 196
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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