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Conserved domains on  [gi|943491716|dbj|BAT24159|]
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tyrosine-protein kinase [Klebsiella sp. 5845/52]

Protein Classification

P-loop NTPase family protein( domain architecture ID 1562424)

P-loop NTPase (nucleoside triphosphate hydrolase) family protein contains two conserved sequence signatures, the Walker A motif (the P-loop proper) and Walker B motif which bind, respectively, the beta and gamma phosphate moieties of the bound nucleotide (typically ATP or GTP), and a Mg(2+) cation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
P-loop_NTPase super family cl38936
P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain ...
 9-704 0e+00

P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a hydrophobic residue). The Walker A and B motifs bind the beta-gamma phosphate moiety of the bound nucleotide (typically ATP or GTP) and the Mg2+ cation, respectively. The P-loop NTPases are involved in diverse cellular functions, and they can be divided into two major structural classes: the KG (kinase-GTPase) class which includes Ras-like GTPases and its circularly permutated YlqF-like; and the ASCE (additional strand catalytic E) class which includes ATPase Binding Cassette (ABC), DExD/H-like helicases, 4Fe-4S iron sulfur cluster binding proteins of NifH family, RecA-like F1-ATPases, and ATPases Associated with a wide variety of Activities (AAA). Also included are a diverse set of nucleotide/nucleoside kinase families.


The actual alignment was detected with superfamily member PRK11519:

Pssm-ID: 476819 [Multi-domain]  Cd Length: 719  Bit Score: 946.13  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716   9 EIKDSGELDLGRLLGELIDHRKLIISVTSLFTLLALIYALFATPVFQADALVQVEQKQANAILSNLSQLLPDSQPQSAPE 88
Cdd:PRK11519  11 PVTGSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAE 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  89 IALLQSRMILGKTVDDLNLQTRVEPLYFPLFGKGWARLTKKNAGSLDVVKFYL-SGANDEDApdaEVRVIDKNHYEITVN 167
Cdd:PRK11519  91 IQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRpKEMADQVF---TLNVLDDKNYQLSSD 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 168 DNV-YKGTVGELLQNNDVIIKVDSINSEAGNEFKLTYYSRYKAIANLQENLSVIDKGKDTGMLTLSLSGYDPVLIQKIVD 246
Cdd:PRK11519 168 GGFsARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILN 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 247 NIASNYLAQNIARQAAQDAKSLDFLNEQLPKVRSDLDLAESKLNEYRKKSDSVDLTLEAKAVLDQIVNADNQLNELTFRE 326
Cdd:PRK11519 248 SITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKE 327

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 327 SEISQLYTKEHPTYKALLEKRKTLQDEKNKLNKRVSAMPSTQQEILRLSRDVESGRAVYMQLLNRQQELSIAKSSAIGNV 406
Cdd:PRK11519 328 AEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDV 407

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 407 RIIDKAITQTKPIKPKKVVIVLSGILIGIIFSVIIVLLRVFLRRGIESPEQLEEQGINVYASIPVSE-EFAHNILKKNKS 485
Cdd:PRK11519 408 RIVDPAITQPGVLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEwQKARDSVKTIKG 487

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 486 gtKKNVEYAHFLAVENPADLAIESIRGLRTSLHFAMMEARNNILMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADM 565
Cdd:PRK11519 488 --IKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 566 RKGYTHKLFKASNENGLSDYLSGKVELQHIIQKIPVGDFDFIPRGIVPPNPAELLMHRRFGELTNWANEHYDIVIMDTPP 645
Cdd:PRK11519 566 RKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPP 645

                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 943491716 646 VLAVTDAAIIGNYVGTTLLIVRFEQNTVKEIEVNIKRFEQSGVIVKGCILNGVVKKVSS 704
Cdd:PRK11519 646 ILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASA 704
 
Name Accession Description Interval E-value
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
9-704 0e+00

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 946.13  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716   9 EIKDSGELDLGRLLGELIDHRKLIISVTSLFTLLALIYALFATPVFQADALVQVEQKQANAILSNLSQLLPDSQPQSAPE 88
Cdd:PRK11519  11 PVTGSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAE 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  89 IALLQSRMILGKTVDDLNLQTRVEPLYFPLFGKGWARLTKKNAGSLDVVKFYL-SGANDEDApdaEVRVIDKNHYEITVN 167
Cdd:PRK11519  91 IQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRpKEMADQVF---TLNVLDDKNYQLSSD 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 168 DNV-YKGTVGELLQNNDVIIKVDSINSEAGNEFKLTYYSRYKAIANLQENLSVIDKGKDTGMLTLSLSGYDPVLIQKIVD 246
Cdd:PRK11519 168 GGFsARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILN 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 247 NIASNYLAQNIARQAAQDAKSLDFLNEQLPKVRSDLDLAESKLNEYRKKSDSVDLTLEAKAVLDQIVNADNQLNELTFRE 326
Cdd:PRK11519 248 SITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKE 327

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 327 SEISQLYTKEHPTYKALLEKRKTLQDEKNKLNKRVSAMPSTQQEILRLSRDVESGRAVYMQLLNRQQELSIAKSSAIGNV 406
Cdd:PRK11519 328 AEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDV 407

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 407 RIIDKAITQTKPIKPKKVVIVLSGILIGIIFSVIIVLLRVFLRRGIESPEQLEEQGINVYASIPVSE-EFAHNILKKNKS 485
Cdd:PRK11519 408 RIVDPAITQPGVLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEwQKARDSVKTIKG 487

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 486 gtKKNVEYAHFLAVENPADLAIESIRGLRTSLHFAMMEARNNILMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADM 565
Cdd:PRK11519 488 --IKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 566 RKGYTHKLFKASNENGLSDYLSGKVELQHIIQKIPVGDFDFIPRGIVPPNPAELLMHRRFGELTNWANEHYDIVIMDTPP 645
Cdd:PRK11519 566 RKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPP 645

                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 943491716 646 VLAVTDAAIIGNYVGTTLLIVRFEQNTVKEIEVNIKRFEQSGVIVKGCILNGVVKKVSS 704
Cdd:PRK11519 646 ILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASA 704
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 14-696 2.08e-112

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 357.49  E-value: 2.08e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716   14 GELDLGRLLGELIDHRKLIISVTSLFTLLALIYALFATPVFQADALVQVEQKqanaiLSNLSQLLPDS------QPQSAP 87
Cdd:TIGR01005   2 GEIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYEADIMILLDDN-----LNKAAEEEGDPsnlfdlDTDAAA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716   88 EIALLQSRMILGKTVDDLNL---QTRVEPLYFPL-FGKGW--ARLTK-KNAGSLDVVKF-YLSGANDEDAPDAEVRVIDK 159
Cdd:TIGR01005  77 AIEILKSGELAGKAVDKLHLsenAKILNPPRFPVdLIGAWikSAAGLfSEPGGFDLGEEaAGNERIDKAAADIPEALAGE 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  160 NHYEITVNDNVYK-----------GTVGELLQNNDVI----IKVDSINSEAGNEFKLTYYSRYKAIANLQENLSVIDKGK 224
Cdd:TIGR01005 157 PFKLISLGAGAFRledkllaapiaGGVAEALEADQLIanfeAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAEKAA 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  225 DTGMLTL-SLSGYDPVLIQKIVDNIASNYLAQNIARQAAQDAKSLDFLNEQLPKVRSDLDLAESKLNEYRKKSDSVDLTL 303
Cdd:TIGR01005 237 QGEIIGEaQLADLNPALIAAIADQAAAEARADNIKRIADEAEENAVFLAGILPKEGDELEIADLKTNELRNGKGEFDLSD 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  304 EAKAVLDQIVNADNQLNELTFRESEISQLYTKEHPTYKALLEKR-KTLQDEKNKLNKRVSAMPSTQQEILRLSRDVESGR 382
Cdd:TIGR01005 317 EFGADHPEAVCSAPSLQELKAKIAEELQQFTASHKGEQAIAQQIeESLRGKINGIAGKLKDAPEIEQDLRELEQDAAADK 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  383 AVYMQLLNRQQELSIAKSSAIGNVRIIDKAITQTKPIKPKKV-VIVLSGILiGIIFSVIIVLLRVFLRRGIESPEQLEEQ 461
Cdd:TIGR01005 397 ELYESLLGDMEQAKLQKAFKIAKARLIDEAAVPEEPSKPKKLmTLALAAVL-GMMLGGAAAAFLEALEGGFRDEGDIEEH 475

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  462 -GINVYASIPVSEE---------FAHNILKKNKSGTKKNVEYAHFLA---VENPADLAIESIRGLRTSLHFAMMEARNNI 528
Cdd:TIGR01005 476 lGHRSLATVPLLDTqmdkkaqltHAHFGSVKRHDEAVDDTMPFQLLArivPDAPRSTFAEAFRNAKLACDFALADAENNL 555

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  529 LMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADMRKGYTHKLFKASNENGLSDYLSGKVELQHIIQKIPVGDFDFIP 608
Cdd:TIGR01005 556 IAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPGLLDLLAGEASIEAGIHRDQRPGLAFIA 635

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  609 RGIV---PPNPAELLMHRRFGELTNWANEHYDIVIMDTPPVLAVTDAAIIGNYVGTTLLIVRFEQNTVKEIEVNIKRFEQ 685
Cdd:TIGR01005 636 AGGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPH 715

                         730
                  ....*....|.
gi 943491716  686 SGVIVKGCILN 696
Cdd:TIGR01005 716 ANSDVLGVIFN 726
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
5-704 8.40e-89

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 292.69  E-value: 8.40e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716   5 TNKNEIKDSGELDLGRLLGELIDHRKLIISVTSLFTLLALIYALFATPVFQADALVQVEQKQANAILSNLSQLlPDSQPQ 84
Cdd:COG3206    4 SSSAPPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLSSL-SASDSP 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  85 SAPEIALLQSRMILGKTVDDLNLQTRVEPlyfplfgkgwarltkknagsldvvkfylsgandedapdaevrvidknhyei 164
Cdd:COG3206   83 LETQIEILKSRPVLERVVDKLNLDEDPLG--------------------------------------------------- 111

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 165 tvndnvykgtvgellqnndviikvdsinseagnefklTYYSRYKAIANLQENLSVIDKgKDTGMLTLSLSGYDPVLIQKI 244
Cdd:COG3206  112 -------------------------------------EEASREAAIERLRKNLTVEPV-KGSNVIEISYTSPDPELAAAV 153

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 245 VDNIASNYLAQNIARQAAQDAKSLDFLNEQLPKVRSDLDLAESKLNEYRKKSDSVDLTLEAKAVLDQIVNADNQLN---- 320
Cdd:COG3206  154 ANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAeara 233

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 321 ----------------------------------------ELTFRESEISQLYTKEHPTYKALLEKR------------- 347
Cdd:COG3206  234 elaeaearlaalraqlgsgpdalpellqspviqqlraqlaELEAELAELSARYTPNHPDVIALRAQIaalraqlqqeaqr 313

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 348 ----------------KTLQDEKNKLNKRVSAMPSTQQEILRLSRDVESGRAVYMQLLNRQQELSIAKSSAIGNVRIIDK 411
Cdd:COG3206  314 ilasleaelealqareASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVIDP 393

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 412 AITQTKPIKPKKVVIVLSGILIGIIFSVIIVLLRVFLRRGIESPEQLEEQGINVYASIPvseefahnILKKNKSGTKKNV 491
Cdd:COG3206  394 AVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPL--------PPLKSKRERRRAR 465

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 492 EYAHFLAVENPADLAIESIRGLRTSLHFAMMEARNNILMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADMRKGYTH 571
Cdd:COG3206  466 LALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLDLLLLLLLL 545

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 572 KLFKASNENGLSDYLSGKVELQHIIQKIPVGDFDFIPRGIVPPNPAELLMHRRFGELTNWANEHYDIVIMDTPPVLAVTD 651
Cdd:COG3206  546 LLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLVPLLAALLA 625

                        730       740       750       760       770
                 ....*....|....*....|....*....|....*....|....*....|...
gi 943491716 652 AAIIGNYVGTTLLIVRFEQNTVKEIEVNIKRFEQSGVIVKGCILNGVVKKVSS 704
Cdd:COG3206  626 AAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYY 678
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 508-697 1.54e-72

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 233.62  E-value: 1.54e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 508 ESIRGLRTSLHFAMMEARNNILMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADMRKGYTHKLFKASNENGLSDYLS 587
Cdd:cd05387    1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 588 GKVELQHIIQKIPVGDFDFIPRGIVPPNPAELLMHRRFGELTNWANEHYDIVIMDTPPVLAVTDAAIIGNYVGTTLLIVR 667
Cdd:cd05387   81 GQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVVR 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 943491716 668 FEQNTVKEIEVNIKRFEQSGVIVKGCILNG 697
Cdd:cd05387  161 AGKTRRREVKEALERLEQAGAKVLGVVLNK 190
GNVR pfam13807
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ...
 366-447 1.72e-33

G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.


Pssm-ID: 433492 [Multi-domain]  Cd Length: 82  Bit Score: 123.09  E-value: 1.72e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  366 STQQEILRLSRDVESGRAVYMQLLNRQQELSIAKSSAIGNVRIIDKAITQTKPIKPKKVVIVLSGILIGIIFSVIIVLLR 445
Cdd:pfam13807   1 DTQQEILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLVLLR 80


                  ..
gi 943491716  446 VF 447
Cdd:pfam13807  81 RA 82
ParA_partition NF041546
ParA family partition ATPase;
538-655 4.36e-03

ParA family partition ATPase;


Pssm-ID: 469431 [Multi-domain]  Cd Length: 202  Bit Score: 39.07  E-value: 4.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 538 AGKTFVSSNLAAVISQTGKKVLFIDADmRKGYTHKLFKASNENGLsdylsgkvelqhiiqkipvgdfdFIPRGIVPPNpa 617
Cdd:NF041546  11 VGKTTLATHLAAALARRGYRVLLVDAD-PQGSALDWAAAREDERP-----------------------FPVVGLARPT-- 64

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 943491716 618 ellMHRrfgELTNWANEhYDIVIMDTPPvlAVTDAAII 655
Cdd:NF041546  65 ---LHR---ELPSLARD-YDFVVIDGPP--RAEDLARS 93
 
Name Accession Description Interval E-value
PRK11519 PRK11519
tyrosine-protein kinase Wzc;
9-704 0e+00

tyrosine-protein kinase Wzc;


Pssm-ID: 183173 [Multi-domain]  Cd Length: 719  Bit Score: 946.13  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716   9 EIKDSGELDLGRLLGELIDHRKLIISVTSLFTLLALIYALFATPVFQADALVQVEQKQANAILSNLSQLLPDSQPQSAPE 88
Cdd:PRK11519  11 PVTGSDEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAE 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  89 IALLQSRMILGKTVDDLNLQTRVEPLYFPLFGKGWARLTKKNAGSLDVVKFYL-SGANDEDApdaEVRVIDKNHYEITVN 167
Cdd:PRK11519  91 IQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRpKEMADQVF---TLNVLDDKNYQLSSD 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 168 DNV-YKGTVGELLQNNDVIIKVDSINSEAGNEFKLTYYSRYKAIANLQENLSVIDKGKDTGMLTLSLSGYDPVLIQKIVD 246
Cdd:PRK11519 168 GGFsARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILN 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 247 NIASNYLAQNIARQAAQDAKSLDFLNEQLPKVRSDLDLAESKLNEYRKKSDSVDLTLEAKAVLDQIVNADNQLNELTFRE 326
Cdd:PRK11519 248 SITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKE 327

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 327 SEISQLYTKEHPTYKALLEKRKTLQDEKNKLNKRVSAMPSTQQEILRLSRDVESGRAVYMQLLNRQQELSIAKSSAIGNV 406
Cdd:PRK11519 328 AEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDV 407

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 407 RIIDKAITQTKPIKPKKVVIVLSGILIGIIFSVIIVLLRVFLRRGIESPEQLEEQGINVYASIPVSE-EFAHNILKKNKS 485
Cdd:PRK11519 408 RIVDPAITQPGVLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEwQKARDSVKTIKG 487

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 486 gtKKNVEYAHFLAVENPADLAIESIRGLRTSLHFAMMEARNNILMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADM 565
Cdd:PRK11519 488 --IKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 566 RKGYTHKLFKASNENGLSDYLSGKVELQHIIQKIPVGDFDFIPRGIVPPNPAELLMHRRFGELTNWANEHYDIVIMDTPP 645
Cdd:PRK11519 566 RKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPP 645

                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 943491716 646 VLAVTDAAIIGNYVGTTLLIVRFEQNTVKEIEVNIKRFEQSGVIVKGCILNGVVKKVSS 704
Cdd:PRK11519 646 ILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASA 704
PRK09841 PRK09841
tyrosine-protein kinase;
15-703 0e+00

tyrosine-protein kinase;


Pssm-ID: 182106 [Multi-domain]  Cd Length: 726  Bit Score: 933.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  15 ELDLGRLLGELIDHRKLIISVTSLFTLLALIYALFATPVFQADALVQVEQKQANAILSNLSQLLPDSQPQSAPEIALLQS 94
Cdd:PRK09841  17 EIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQS 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  95 RMILGKTVDDLNLQTRVEPLYFPLFGKGWARLTKKNAGSLDVVKFYLSGANDEDAPdAEVRVIDKNHYEITVNDNVYKGT 174
Cdd:PRK09841  97 RMILGKTIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQ-LTLTVGENGHYTLEGEEFTVNGM 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 175 VGELLQNNDVIIKVDSINSEAGNEFKLTYYSRYKAIANLQENLSVIDKGKDTGMLTLSLSGYDPVLIQKIVDNIASNYLA 254
Cdd:PRK09841 176 VGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQ 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 255 QNIARQAAQDAKSLDFLNEQLPKVRSDLDLAESKLNEYRKKSDSVDLTLEAKAVLDQIVNADNQLNELTFRESEISQLYT 334
Cdd:PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYK 335

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 335 KEHPTYKALLEKRKTLQDEKNKLNKRVSAMPSTQQEILRLSRDVESGRAVYMQLLNRQQELSIAKSSAIGNVRIIDKAIT 414
Cdd:PRK09841 336 KDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVT 415

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 415 QTKPIKPKKVVIVLSGILIGIIFSVIIVLLRVFLRRGIESPEQLEEQGINVYASIPVSEEF--AHNILKKNKSGTKKN-- 490
Cdd:PRK09841 416 QPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEHGISVYATIPMSEWLdkRTRLRKKNLFSNQQRhr 495

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 491 VEYAHFLAVENPADLAIESIRGLRTSLHFAMMEARNNILMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADMRKGYT 570
Cdd:PRK09841 496 TKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYS 575

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 571 HKLFKASNENGLSDYLSGKVELQHIIQKIPVGDFDFIPRGIVPPNPAELLMHRRFGELTNWANEHYDIVIMDTPPVLAVT 650
Cdd:PRK09841 576 HNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVS 655

                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|...
gi 943491716 651 DAAIIGNYVGTTLLIVRFEQNTVKEIEVNIKRFEQSGVIVKGCILNGVVKKVS 703
Cdd:PRK09841 656 DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRAS 708
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 14-696 2.08e-112

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 357.49  E-value: 2.08e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716   14 GELDLGRLLGELIDHRKLIISVTSLFTLLALIYALFATPVFQADALVQVEQKqanaiLSNLSQLLPDS------QPQSAP 87
Cdd:TIGR01005   2 GEIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYEADIMILLDDN-----LNKAAEEEGDPsnlfdlDTDAAA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716   88 EIALLQSRMILGKTVDDLNL---QTRVEPLYFPL-FGKGW--ARLTK-KNAGSLDVVKF-YLSGANDEDAPDAEVRVIDK 159
Cdd:TIGR01005  77 AIEILKSGELAGKAVDKLHLsenAKILNPPRFPVdLIGAWikSAAGLfSEPGGFDLGEEaAGNERIDKAAADIPEALAGE 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  160 NHYEITVNDNVYK-----------GTVGELLQNNDVI----IKVDSINSEAGNEFKLTYYSRYKAIANLQENLSVIDKGK 224
Cdd:TIGR01005 157 PFKLISLGAGAFRledkllaapiaGGVAEALEADQLIanfeAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAEKAA 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  225 DTGMLTL-SLSGYDPVLIQKIVDNIASNYLAQNIARQAAQDAKSLDFLNEQLPKVRSDLDLAESKLNEYRKKSDSVDLTL 303
Cdd:TIGR01005 237 QGEIIGEaQLADLNPALIAAIADQAAAEARADNIKRIADEAEENAVFLAGILPKEGDELEIADLKTNELRNGKGEFDLSD 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  304 EAKAVLDQIVNADNQLNELTFRESEISQLYTKEHPTYKALLEKR-KTLQDEKNKLNKRVSAMPSTQQEILRLSRDVESGR 382
Cdd:TIGR01005 317 EFGADHPEAVCSAPSLQELKAKIAEELQQFTASHKGEQAIAQQIeESLRGKINGIAGKLKDAPEIEQDLRELEQDAAADK 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  383 AVYMQLLNRQQELSIAKSSAIGNVRIIDKAITQTKPIKPKKV-VIVLSGILiGIIFSVIIVLLRVFLRRGIESPEQLEEQ 461
Cdd:TIGR01005 397 ELYESLLGDMEQAKLQKAFKIAKARLIDEAAVPEEPSKPKKLmTLALAAVL-GMMLGGAAAAFLEALEGGFRDEGDIEEH 475

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  462 -GINVYASIPVSEE---------FAHNILKKNKSGTKKNVEYAHFLA---VENPADLAIESIRGLRTSLHFAMMEARNNI 528
Cdd:TIGR01005 476 lGHRSLATVPLLDTqmdkkaqltHAHFGSVKRHDEAVDDTMPFQLLArivPDAPRSTFAEAFRNAKLACDFALADAENNL 555

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  529 LMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADMRKGYTHKLFKASNENGLSDYLSGKVELQHIIQKIPVGDFDFIP 608
Cdd:TIGR01005 556 IAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPGLLDLLAGEASIEAGIHRDQRPGLAFIA 635

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  609 RGIV---PPNPAELLMHRRFGELTNWANEHYDIVIMDTPPVLAVTDAAIIGNYVGTTLLIVRFEQNTVKEIEVNIKRFEQ 685
Cdd:TIGR01005 636 AGGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPH 715

                         730
                  ....*....|.
gi 943491716  686 SGVIVKGCILN 696
Cdd:TIGR01005 716 ANSDVLGVIFN 726
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
5-704 8.40e-89

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 292.69  E-value: 8.40e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716   5 TNKNEIKDSGELDLGRLLGELIDHRKLIISVTSLFTLLALIYALFATPVFQADALVQVEQKQANAILSNLSQLlPDSQPQ 84
Cdd:COG3206    4 SSSAPPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLSSL-SASDSP 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  85 SAPEIALLQSRMILGKTVDDLNLQTRVEPlyfplfgkgwarltkknagsldvvkfylsgandedapdaevrvidknhyei 164
Cdd:COG3206   83 LETQIEILKSRPVLERVVDKLNLDEDPLG--------------------------------------------------- 111

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 165 tvndnvykgtvgellqnndviikvdsinseagnefklTYYSRYKAIANLQENLSVIDKgKDTGMLTLSLSGYDPVLIQKI 244
Cdd:COG3206  112 -------------------------------------EEASREAAIERLRKNLTVEPV-KGSNVIEISYTSPDPELAAAV 153

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 245 VDNIASNYLAQNIARQAAQDAKSLDFLNEQLPKVRSDLDLAESKLNEYRKKSDSVDLTLEAKAVLDQIVNADNQLN---- 320
Cdd:COG3206  154 ANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAeara 233

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 321 ----------------------------------------ELTFRESEISQLYTKEHPTYKALLEKR------------- 347
Cdd:COG3206  234 elaeaearlaalraqlgsgpdalpellqspviqqlraqlaELEAELAELSARYTPNHPDVIALRAQIaalraqlqqeaqr 313

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 348 ----------------KTLQDEKNKLNKRVSAMPSTQQEILRLSRDVESGRAVYMQLLNRQQELSIAKSSAIGNVRIIDK 411
Cdd:COG3206  314 ilasleaelealqareASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVIDP 393

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 412 AITQTKPIKPKKVVIVLSGILIGIIFSVIIVLLRVFLRRGIESPEQLEEQGINVYASIPvseefahnILKKNKSGTKKNV 491
Cdd:COG3206  394 AVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPL--------PPLKSKRERRRAR 465

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 492 EYAHFLAVENPADLAIESIRGLRTSLHFAMMEARNNILMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADMRKGYTH 571
Cdd:COG3206  466 LALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLDLLLLLLLL 545

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 572 KLFKASNENGLSDYLSGKVELQHIIQKIPVGDFDFIPRGIVPPNPAELLMHRRFGELTNWANEHYDIVIMDTPPVLAVTD 651
Cdd:COG3206  546 LLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLVPLLAALLA 625

                        730       740       750       760       770
                 ....*....|....*....|....*....|....*....|....*....|...
gi 943491716 652 AAIIGNYVGTTLLIVRFEQNTVKEIEVNIKRFEQSGVIVKGCILNGVVKKVSS 704
Cdd:COG3206  626 AAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGYYY 678
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 508-697 1.54e-72

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 233.62  E-value: 1.54e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 508 ESIRGLRTSLHFAMMEARNNILMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADMRKGYTHKLFKASNENGLSDYLS 587
Cdd:cd05387    1 EAFRTLRTNLLFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 588 GKVELQHIIQKIPVGDFDFIPRGIVPPNPAELLMHRRFGELTNWANEHYDIVIMDTPPVLAVTDAAIIGNYVGTTLLIVR 667
Cdd:cd05387   81 GQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLVVR 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 943491716 668 FEQNTVKEIEVNIKRFEQSGVIVKGCILNG 697
Cdd:cd05387  161 AGKTRRREVKEALERLEQAGAKVLGVVLNK 190
Mrp COG0489
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ...
 528-698 1.51e-58

Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440255 [Multi-domain]  Cd Length: 289  Bit Score: 200.03  E-value: 1.51e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 528 ILMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADMRKGYTHKLFKASNENGLSDYLSGKVELQHIIQKIPVGDFDFI 607
Cdd:COG0489   94 VIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLAGEASLEDVIQPTEVEGLDVL 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 608 PRGIVPPNPAELLMHRRFGELTNWANEHYDIVIMDTPPVLAVTDAAIIGNYVGTTLLIVRFEQNTVKEIEVNIKRFEQSG 687
Cdd:COG0489  174 PAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVLLVVRPGKTALDDVRKALEMLEKAG 253

                        170
                 ....*....|.
gi 943491716 688 VIVKGCILNGV 698
Cdd:COG0489  254 VPVLGVVLNMV 264
eps_fam TIGR01007
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ...
 508-704 1.51e-45

capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273392 [Multi-domain]  Cd Length: 204  Bit Score: 161.45  E-value: 1.51e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  508 ESIRGLRTSLHFAMmeARNNILMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADMRKGYTHKLFKASNEN-GLSDYL 586
Cdd:TIGR01007   1 EYYNAIRTNIQFSG--AEIKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKItGLTNFL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  587 SGKVELQHIIQKIPVGDFDFIPRGIVPPNPAELLMHRRFGELTNWANEHYDIVIMDTPPVLAVTDAAIIGNYVGTTLLIV 666
Cdd:TIGR01007  79 SGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASILVT 158

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 943491716  667 RFEQNTVKEIEVNIKRFEQSGVIVKGCILNGVVKKVSS 704
Cdd:TIGR01007 159 DAGKIKKREVKKAKEQLEQAGSNFLGVVLNKVDISVSK 196
EpsG TIGR03029
chain length determinant protein tyrosine kinase EpsG; The proteins in this family are ...
 471-696 1.81e-40

chain length determinant protein tyrosine kinase EpsG; The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).


Pssm-ID: 132074 [Multi-domain]  Cd Length: 274  Bit Score: 149.63  E-value: 1.81e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  471 VSEEFAHNILKKNKSGTKknveyAHFLAVENPADLAIESIRGLRTSLHFAMMEARNNILMISGASPNAGKTFVSSNLAAV 550
Cdd:TIGR03029  53 LSRQFEYPYLPPNDGSFS-----PDLIAAYQPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIV 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  551 ISQTGKKVLFIDADMRKGYTHKLFKASNENGLSDYLSGKVELQHIIQKIPVGDFDFIPRGIVPPNPAELLMHRRFGELTN 630
Cdd:TIGR03029 128 FSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENLSVLPAGAIPPNPQELLARPAFTDLLN 207

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 943491716  631 WANEHYDIVIMDTPPVLAVTDAAIIGNYVGTTLLIVRFEQNTVKEIEVNIKRFEQSGVIVKGCILN 696
Cdd:TIGR03029 208 KVMGDYDVVIVDTPSAEHSSDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLN 273
GNVR pfam13807
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ...
 366-447 1.72e-33

G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.


Pssm-ID: 433492 [Multi-domain]  Cd Length: 82  Bit Score: 123.09  E-value: 1.72e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  366 STQQEILRLSRDVESGRAVYMQLLNRQQELSIAKSSAIGNVRIIDKAITQTKPIKPKKVVIVLSGILIGIIFSVIIVLLR 445
Cdd:pfam13807   1 DTQQEILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLVLLR 80


                  ..
gi 943491716  446 VF 447
Cdd:pfam13807  81 RA 82
Wzz pfam02706
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ...
 14-104 1.57e-25

Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.


Pssm-ID: 460658 [Multi-domain]  Cd Length: 90  Bit Score: 100.82  E-value: 1.57e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716   14 GELDLGRLLGELIDHRKLIISVTSLFTLLALIYALFATPVFQADALVQVEQKQANAILSNLSQLLPDSQPQSApEIALLQ 93
Cdd:pfam02706   1 DEIDLIELLGVLWKRKKLIILVTLLFTLLAAAYAFLATPKYTATAQILVPQKKGEAGSLLGSDLQAGLQLAST-EIEILK 79

                          90
                  ....*....|.
gi 943491716   94 SRMILGKTVDD 104
Cdd:pfam02706  80 SRDVLEKVIDE 90
FlhG-like cd02038
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ...
 539-645 1.33e-13

MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.


Pssm-ID: 349758 [Multi-domain]  Cd Length: 230  Bit Score: 70.68  E-value: 1.33e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 539 GKTFVSSNLAAVISQTGKKVLFIDADMRKGYTHKLFKASNENGLSDYLSGKVELQHIIQKIPvGDFDFIPRGIVPPNPAE 618
Cdd:cd02038   13 GKTNVSANLALALSKLGKRVLLLDADLGLANLDILLGLAPKKTLGDVLKGRVSLEDIIVEGP-EGLDIIPGGSGMEELAN 91

                         90       100
                 ....*....|....*....|....*....
gi 943491716 619 L--LMHRRFGELTNWANEHYDIVIMDTPP 645
Cdd:cd02038   92 LdpEQKAKLIEELSSLESNYDYLLIDTGA 120
FlhG COG0455
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ...
 542-653 1.92e-11

MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440223 [Multi-domain]  Cd Length: 230  Bit Score: 64.53  E-value: 1.92e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 542 FVSSNLAAVISQTGKKVLFIDADMRKGYTHKLFKASNENGLSDYLSGKVELQHIIQKIPvGDFDFIPRGIVPPNPAELLM 621
Cdd:COG0455    1 TVAVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLAGEADLEDAIVQGP-GGLDVLPGGSGPAELAELDP 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 943491716 622 HRRFGELTNWANEHYDIVIMDTPP-----VLAVTDAA 653
Cdd:COG0455   80 EERLIRVLEELERFYDVVLVDTGAgisdsVLLFLAAA 116
AAA_31 pfam13614
AAA domain; This family includes a wide variety of AAA domains including some that have lost ...
 539-659 7.47e-11

AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.


Pssm-ID: 433350 [Multi-domain]  Cd Length: 177  Bit Score: 61.45  E-value: 7.47e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  539 GKTFVSSNLAAVISQTGKKVLFIDADMRKGYTHKLF--KASNENGLSDYLSGKVELQHIIQKIPVGDFDFIPRGIVPPNp 616
Cdd:pfam13614  14 GKTTTSVNLAAALAKKGKKVLLIDLDPQGNATSGLGidKNNVEKTIYELLIGECNIEEAIIKTVIENLDLIPSNIDLAG- 92

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 943491716  617 AELLM------HRRFGELTNWANEHYDIVIMDTPPVLAV--TDAAIIGNYV 659
Cdd:pfam13614  93 AEIELigienrENILKEALEPVKDNYDYIIIDCPPSLGLltINALTASDSV 143
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 539-655 1.86e-10

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 61.80  E-value: 1.86e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 539 GKTFVSSNLAAVISQTGKKVLFIDAD----MRKGYthKLFKASNENGLSDYLSGKVELQHIIQKIPVGDFDFIP------ 608
Cdd:COG1192   14 GKTTTAVNLAAALARRGKRVLLIDLDpqgnLTSGL--GLDPDDLDPTLYDLLLDDAPLEDAIVPTEIPGLDLIPanidla 91

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 943491716 609 ---RGIVPPNPAELLMHRRFGELtnwaNEHYDIVIMDTPPVLAV-TDAAII 655
Cdd:COG1192   92 gaeIELVSRPGRELRLKRALAPL----ADDYDYILIDCPPSLGLlTLNALA 138
WzzB COG3765
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope ...
 15-450 3.22e-10

LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442979 [Multi-domain]  Cd Length: 364  Bit Score: 62.30  E-value: 3.22e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  15 ELDLGRLLGELIDHRKLIISVTSLFTLLALIYALFATPVFQADALVQVEQKQANAILSNLSQLLpdsqpqsapeIALLQS 94
Cdd:COG3765   21 EIDLFELLRTLWQGKLWIIGITLLFALLALVYAFLLPQKWTSTAIVDPPTVNELGGYYSQRQFL----------RNLDVK 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  95 RMILGKTVDDLnlqtrveplyFPLFGkgwarltkKNAGSLDVVKFYLSgandedapdaevrvidknhyeitvNDNVYKGt 174
Cdd:COG3765   91 SVDPPVISSEL----------FNEFI--------KQLSSYDLRREFLL------------------------QSDYYKQ- 127

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 175 vgelLQNNDVIikvdsinseagnefkltyySRYKAIANLQENLSVI--DKGKDTGM---LTLSLSGYDPVLIQKI----V 245
Cdd:COG3765  128 ----LQEGDEK-------------------EDAALLDELINNISITppDDKKKSSPytnYSVSFTAETPEDAQQLlrgyI 184

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 246 DNIASNYLAQNIARQAAQDAKSLDFLNEQLPKVRSDLdlaeskLNEYRKKSDSVDLTLEAKavldqivnadNQLNELTFR 325
Cdd:COG3765  185 DFANQRVLKELNEELQGAIAARLQSLKAQIKRLEEVA------KAQRQRRIERLKYALKIA----------QAAGIKKPV 248

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 326 ESEISQLYTKEHPTYKALLeKRKTLQDEKnklnkrvsampstqqEILRLSRDVESGRAVYMQLLNRQQEL---SIAKSSA 402
Cdd:COG3765  249 YSNGQTPAVKLDPSYLFLL-GTDALQAEL---------------EILKARGDDYPLNADLYQLQAQLAQLnalPIDDVGF 312

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*...
gi 943491716 403 IGnVRIIDKAITQTKPIKPKKVVIVLSGILIGIIFSVIIVLLRVFLRR 450
Cdd:COG3765  313 QP-FRYLRTPEEPVKKDKPKRALILVLGALLGGMLGVGVVLIRHALRS 359
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
339-566 1.49e-09

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 60.08  E-value: 1.49e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 339 TYKALLEKRKTLQDEKNKLN---------KRVSAMPSTQQEILRLSrdVESGRAVY-MQLLNRQQELSIAKSSAI---GN 405
Cdd:COG3944   72 TYAELLKSPAVLEEVIDELGldlspeelaKKISVTSPPDTQVITIT--VTDTDPERaADIANAVAEVFAEEVKELmkvDN 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 406 VRIIDKAITQTKPIKPKKVVIVLSGILIGIIFSVIIVLLRVFLRRGIESPEQLEEQgINVYASIPVSEEFAHnilkknks 485
Cdd:COG3944  150 VTVLDPATVPASPVSPNPKLNLAIGLVLGLLLGVGLAFLRELLDTTIRSEEDIERL-LGLLLGGAVPAARSA-------- 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 486 gtkknveyAHFLAVENPADLAIESIRGLRTSLHFAMMEARNNILMISGASPNAGKTFVSSNLAAVISQTGKKVLFIDADM 565
Cdd:COG3944  221 --------RPLLLLLADASPRAAAARRRRRNLLFALAAVDARTVVVVSSSLSEGKSTTTAALALALAAAAAGVVLVLADL 292


                 .
gi 943491716 566 R 566
Cdd:COG3944  293 D 293
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 528-657 2.09e-09

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 58.51  E-value: 2.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  528 ILMISGASpNAGKTFVSSNLAAVISQTGKKVLFIDAD----MRKGYTHKLFKASNENGLSDYLSGKVELQHIIQKIP--V 601
Cdd:pfam01656   1 IAIAGTKG-GVGKTTLAANLARALARRGLRVLLIDLDpqsnNSSVEGLEGDIAPALQALAEGLKGRVNLDPILLKEKsdE 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 943491716  602 GDFDFIPRGIVPPNPAELLMHRRFGELTNWA----NEHYDIVIMDTPPVLAV-TDAAIIGN 657
Cdd:pfam01656  80 GGLDLIPGNIDLEKFEKELLGPRKEERLREAlealKEDYDYVIIDGAPGLGElLRNALIAA 140
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
15-114 2.83e-07

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 52.76  E-value: 2.83e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  15 ELDLGRLLGELIDHRKLIISVTSLFTLLALIYALFATPVFQADA--LVQVEQKQANAILSNLSQLLpDSQPQSAPEIAll 92
Cdd:COG3944    1 EMDLREYLRILRRRWWLILLLTLLGALAALASSFLITPVYQASTtlLVSTSSGSDASDLYQGIQTA-QQLVNTYAELL-- 77

                         90       100
                 ....*....|....*....|..
gi 943491716  93 QSRMILGKTVDDLNLQTRVEPL 114
Cdd:COG3944   78 KSPAVLEEVIDELGLDLSPEEL 99
KpsE COG3524
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
28-379 1.61e-06

Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442746 [Multi-domain]  Cd Length: 370  Bit Score: 51.00  E-value: 1.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  28 HRKLIISVTSLF---TLLALIY-ALFATPVFQADALVQVEQKQANAILSNLSQLLPDSQPQSAPEIAL-----LQSRMIL 98
Cdd:COG3524    9 RKLLLLLFLLFVllpTLLAALYyGLIASDQYVSEARFVVRSAEGQSGSDGLGGLLGGTGFSSSSQDSYivqdyLRSRDAV 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  99 GKTVDDLNLQTRveplyfplFGKGWArltkknagslDVVKFYLSGANDEDAPDaevrvidknHYeitvndnvykgtvgel 178
Cdd:COG3524   89 ERLDAELDLRAH--------YSRPGI----------DPLSRLDPDASIEDLYK---------YY---------------- 125

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 179 lqNNDVIIKVDSInseagnefkltyysrykaianlqenlsvidkgkdTGMLTLSLSGYDPVLIQKIVDNI--ASNYLAQN 256
Cdd:COG3524  126 --RRRVKVEYDST----------------------------------SGIITLEVRAFDPEDAQAIAEALlaESEELVNQ 169

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 257 IARQAAQDAksLDFLNEQLPKVRSDLDLAESKLNEYRKKSDSVDLTLEAKAVLDQIVNADNQLNELtfrESEISQL---Y 333
Cdd:COG3524  170 LSERAREDA--VRFAEEEVERAEERLRDAREALLAFRNRNGILDPEATAEALLQLIATLEGQLAEL---EAELAALrsyL 244

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 943491716 334 TKEHPTYKALLEKRKTLQDEKNKLNKRV------SAMPSTQQEILRLSRDVE 379
Cdd:COG3524  245 SPNSPQVRQLRRRIAALEKQIAAERARLtgasggDSLASLLAEYERLELERE 296
CpaE COG4963
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ...
 533-647 4.42e-06

Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443989 [Multi-domain]  Cd Length: 358  Bit Score: 49.34  E-value: 4.42e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 533 GASPNAGKTFVSSNLAAVISQ-TGKKVLFIDADMRKGYTHKLFKASNENGLSDYLSG-----KVELQHIIQKIPVGdFDF 606
Cdd:COG4963  109 GAKGGVGATTLAVNLAWALAReSGRRVLLVDLDLQFGDVALYLDLEPRRGLADALRNpdrldETLLDRALTRHSSG-LSV 187

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 943491716 607 IPrGIVPPNPAELLMHRRFGELTNWANEHYDIVIMDTPPVL 647
Cdd:COG4963  188 LA-APADLERAEEVSPEAVERLLDLLRRHFDYVVVDLPRGL 227
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
258-374 6.91e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 49.53  E-value: 6.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  258 ARQAAQDAKSLDFLNEQLPKVRSDLDLAESKLNEYRKKSDSVDLTL--EAKAVLDQIVNADNQLNELTFRESEISQLYTK 335
Cdd:COG4913   330 AQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLpaSAEEFAALRAEAAALLEALEEELEALEEALAE 409

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 943491716  336 EHPTYKALLEKRKTLQDEKNKLNKRVSAMPSTQQEILRL 374
Cdd:COG4913   410 AEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
minD_arch TIGR01969
cell division ATPase MinD, archaeal; This model represents the archaeal branch of the MinD ...
 528-698 4.07e-05

cell division ATPase MinD, archaeal; This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.


Pssm-ID: 131024 [Multi-domain]  Cd Length: 251  Bit Score: 45.88  E-value: 4.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  528 ILMISGASpNAGKTFVSSNLAAVISQTGKKVLFIDADMRKGYTHKLFKASNEN-GLSDYLSGKVELQHIIQKIPVGDFdF 606
Cdd:TIGR01969   3 ITIASGKG-GTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPvTLHDVLAGEADIKDAIYEGPFGVK-V 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716  607 IPRGIvppnPAELLMH---RRFGELTNWANEHYDIVIMDTPPVLAVTdaAIIGNYVGTTLLIVRFEQ-----NTVKEIEV 678
Cdd:TIGR01969  81 IPAGV----SLEGLRKadpDKLEDVLKEIIDDTDFLLIDAPAGLERD--AVTALAAADELLLVVNPEissitDALKTKIV 154

                         170       180
                  ....*....|....*....|
gi 943491716  679 nikrFEQSGVIVKGCILNGV 698
Cdd:TIGR01969 155 ----AEKLGTAILGVVLNRV 170
ParAB_family cd02042
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ...
 538-564 2.18e-03

partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.


Pssm-ID: 349760 [Multi-domain]  Cd Length: 130  Bit Score: 38.68  E-value: 2.18e-03
                         10        20
                 ....*....|....*....|....*..
gi 943491716 538 AGKTFVSSNLAAVISQTGKKVLFIDAD 564
Cdd:cd02042   12 VGKTTLAVNLAAALALRGKRVLLIDLD 38
ParA_partition NF041546
ParA family partition ATPase;
538-655 4.36e-03

ParA family partition ATPase;


Pssm-ID: 469431 [Multi-domain]  Cd Length: 202  Bit Score: 39.07  E-value: 4.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 943491716 538 AGKTFVSSNLAAVISQTGKKVLFIDADmRKGYTHKLFKASNENGLsdylsgkvelqhiiqkipvgdfdFIPRGIVPPNpa 617
Cdd:NF041546  11 VGKTTLATHLAAALARRGYRVLLVDAD-PQGSALDWAAAREDERP-----------------------FPVVGLARPT-- 64

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 943491716 618 ellMHRrfgELTNWANEhYDIVIMDTPPvlAVTDAAII 655
Cdd:NF041546  65 ---LHR---ELPSLARD-YDFVVIDGPP--RAEDLARS 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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