NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|942230493|gb|KQC46997|]
View 

transcription attenuation protein MtrB [Geobacillus sp. Sah69]

Protein Classification

trp RNA-binding attenuation protein MtrB( domain architecture ID 10014152)

trp RNA-binding attenuation protein MtrB is required for transcription attenuation control in the trp operon

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
1-73 6.48e-47

trp RNA-binding attenuation protein MtrB;


:

Pssm-ID: 183917  Cd Length: 75  Bit Score: 143.32  E-value: 6.48e-47
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 942230493  1 MYTNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK 73
Cdd:PRK13251  3 MYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEEK 75
 
Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
1-73 6.48e-47

trp RNA-binding attenuation protein MtrB;


Pssm-ID: 183917  Cd Length: 75  Bit Score: 143.32  E-value: 6.48e-47
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 942230493  1 MYTNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK 73
Cdd:PRK13251  3 MYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEEK 75
TrpBP pfam02081
Tryptophan RNA-binding attenuator protein;
4-71 2.07e-43

Tryptophan RNA-binding attenuator protein;


Pssm-ID: 396590  Cd Length: 68  Bit Score: 134.39  E-value: 2.07e-43
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 942230493   4 NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE 71
Cdd:pfam02081  1 SADYIVIKALENGVTVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEILTKHGEIESE 68
 
Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
1-73 6.48e-47

trp RNA-binding attenuation protein MtrB;


Pssm-ID: 183917  Cd Length: 75  Bit Score: 143.32  E-value: 6.48e-47
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 942230493  1 MYTNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK 73
Cdd:PRK13251  3 MYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEEK 75
TrpBP pfam02081
Tryptophan RNA-binding attenuator protein;
4-71 2.07e-43

Tryptophan RNA-binding attenuator protein;


Pssm-ID: 396590  Cd Length: 68  Bit Score: 134.39  E-value: 2.07e-43
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 942230493   4 NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE 71
Cdd:pfam02081  1 SADYIVIKALENGVTVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEILTKHGEIESE 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH