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Conserved domains on  [gi|941094699|ref|WP_055063859|]
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MULTISPECIES: ATP-binding protein [Bifidobacterium]

Protein Classification

ATP-binding protein( domain architecture ID 11443254)

uncharacterized ATP-binding protein with AAA (ATPases Associated with various cellular Activities) and DUF4143 domains, may function as an ATPase

Gene Ontology:  GO:0005524

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG1373 COG1373
Predicted ATPase, AAA+ superfamily [General function prediction only];
6-426 3.24e-93

Predicted ATPase, AAA+ superfamily [General function prediction only];


:

Pssm-ID: 440984 [Multi-domain]  Cd Length: 405  Bit Score: 286.45  E-value: 3.24e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699   6 MAEYRPRVADRRLEKLLRAFGAVEIVGPKWCGKTWTALAHASSVDR-----LDDSATYDAASNDPNLVLM-------GEE 73
Cdd:COG1373    1 VMIMIKRKILDKLLKLLDNRKAVVITGPRQVGKTTLLKQLAKELENilyinLDDPRLRALAEEDPDDLLEalkelypGKT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699  74 PHLVDEWQEVPAVWDAARRHVDDNanRKGQLILTGSSQPKETEKIHHSGTGRIARLHMRPMSLAESGESTGSvSLGKLFE 153
Cdd:COG1373   81 YLFLDEIQRVPEWEDALKRLVDDG--RNGRFILTGSSSLLLSKELAESLAGRIESLELYPLSFREFLEAKGE-SLDDLLP 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699 154 gefEPSRNKTGIMDVARWCCRGGWP-SNLDVEDEFALETSAEYVRSILDVNIPKLGL--NPEIMRVLMKALAMNVAQAPT 230
Cdd:COG1373  158 ---LSEEHDELLELLEEYLLRGGFPeAVLLDDERDKRRWLKSYIETILERDIPKRAGirDPELLRRLLRSLASNLGQLFS 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699 231 YETLMKDMSygdegvsISAPTLKRYVDELKSLYLIDDLEGWepSLRAKSRVRTKPKRYFVDPSLPSALLGATPAVLARDT 310
Cdd:COG1373  235 YSKLANDLG-------ISKKTVKRYLDYLEDAFLIFRLPPY--DLNLKKRLRKSPKLYLVDTGLLNALLGLDPEELLLDS 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699 311 QTLGDLFETLVIRDLRVYlesmggANRIAYYRDEKGLEVDVILELvDGRWAAVEIKLSDlKVMEKNVDKLHAFKEKVcgn 390
Cdd:COG1373  306 EDLGALLENFVFLELLRR------GYEVYYWRTKDGAEVDFVLEK-GGKIIPIEVKYGE-NTRERELKSLKKFRDKY--- 374
                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 941094699 391 plsqvrePEFMAFIVGRGDIAYRRDDGILVLPIATL 426
Cdd:COG1373  375 -------GPAKGIVITLGDEGRLEIDGILVIPLWKL 403
 
Name Accession Description Interval E-value
COG1373 COG1373
Predicted ATPase, AAA+ superfamily [General function prediction only];
6-426 3.24e-93

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440984 [Multi-domain]  Cd Length: 405  Bit Score: 286.45  E-value: 3.24e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699   6 MAEYRPRVADRRLEKLLRAFGAVEIVGPKWCGKTWTALAHASSVDR-----LDDSATYDAASNDPNLVLM-------GEE 73
Cdd:COG1373    1 VMIMIKRKILDKLLKLLDNRKAVVITGPRQVGKTTLLKQLAKELENilyinLDDPRLRALAEEDPDDLLEalkelypGKT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699  74 PHLVDEWQEVPAVWDAARRHVDDNanRKGQLILTGSSQPKETEKIHHSGTGRIARLHMRPMSLAESGESTGSvSLGKLFE 153
Cdd:COG1373   81 YLFLDEIQRVPEWEDALKRLVDDG--RNGRFILTGSSSLLLSKELAESLAGRIESLELYPLSFREFLEAKGE-SLDDLLP 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699 154 gefEPSRNKTGIMDVARWCCRGGWP-SNLDVEDEFALETSAEYVRSILDVNIPKLGL--NPEIMRVLMKALAMNVAQAPT 230
Cdd:COG1373  158 ---LSEEHDELLELLEEYLLRGGFPeAVLLDDERDKRRWLKSYIETILERDIPKRAGirDPELLRRLLRSLASNLGQLFS 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699 231 YETLMKDMSygdegvsISAPTLKRYVDELKSLYLIDDLEGWepSLRAKSRVRTKPKRYFVDPSLPSALLGATPAVLARDT 310
Cdd:COG1373  235 YSKLANDLG-------ISKKTVKRYLDYLEDAFLIFRLPPY--DLNLKKRLRKSPKLYLVDTGLLNALLGLDPEELLLDS 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699 311 QTLGDLFETLVIRDLRVYlesmggANRIAYYRDEKGLEVDVILELvDGRWAAVEIKLSDlKVMEKNVDKLHAFKEKVcgn 390
Cdd:COG1373  306 EDLGALLENFVFLELLRR------GYEVYYWRTKDGAEVDFVLEK-GGKIIPIEVKYGE-NTRERELKSLKKFRDKY--- 374
                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 941094699 391 plsqvrePEFMAFIVGRGDIAYRRDDGILVLPIATL 426
Cdd:COG1373  375 -------GPAKGIVITLGDEGRLEIDGILVIPLWKL 403
DUF4143 pfam13635
Domain of unknown function (DUF4143); This domain is almost always found C-terminal to an ...
204-368 8.29e-36

Domain of unknown function (DUF4143); This domain is almost always found C-terminal to an ATPase core family.


Pssm-ID: 463942  Cd Length: 159  Bit Score: 129.26  E-value: 8.29e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699  204 IPKLG--LNPEIMRVLMKALAMNVAQAPTYETLmkdmsygDEGVSISAPTLKRYVDELKSLYLIDDLEGWEPSLRAksRV 281
Cdd:pfam13635   4 IAKLAgvRDPEKLRRLLRSLALQLGQLFNYSEL-------AKDLGVSRKTVARYLDLLELLFLIYRLPPWSRNLRK--RL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699  282 RTKPKRYFVDPSLPSALLGATPAVLARDTQTLGDLFETLVIRDLRVYLEsmGGANRIAYYRDEKGLEVDVILELVDGRWA 361
Cdd:pfam13635  75 VKSPKLYFADTGLLNALLGLDASDLLLDNPNKGALFENFVAQELLKRGY--YVEAALYYYRDKDGAEVDFVLELGGGRVI 152

                  ....*..
gi 941094699  362 AVEIKLS 368
Cdd:pfam13635 153 PIEVKAG 159
 
Name Accession Description Interval E-value
COG1373 COG1373
Predicted ATPase, AAA+ superfamily [General function prediction only];
6-426 3.24e-93

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440984 [Multi-domain]  Cd Length: 405  Bit Score: 286.45  E-value: 3.24e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699   6 MAEYRPRVADRRLEKLLRAFGAVEIVGPKWCGKTWTALAHASSVDR-----LDDSATYDAASNDPNLVLM-------GEE 73
Cdd:COG1373    1 VMIMIKRKILDKLLKLLDNRKAVVITGPRQVGKTTLLKQLAKELENilyinLDDPRLRALAEEDPDDLLEalkelypGKT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699  74 PHLVDEWQEVPAVWDAARRHVDDNanRKGQLILTGSSQPKETEKIHHSGTGRIARLHMRPMSLAESGESTGSvSLGKLFE 153
Cdd:COG1373   81 YLFLDEIQRVPEWEDALKRLVDDG--RNGRFILTGSSSLLLSKELAESLAGRIESLELYPLSFREFLEAKGE-SLDDLLP 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699 154 gefEPSRNKTGIMDVARWCCRGGWP-SNLDVEDEFALETSAEYVRSILDVNIPKLGL--NPEIMRVLMKALAMNVAQAPT 230
Cdd:COG1373  158 ---LSEEHDELLELLEEYLLRGGFPeAVLLDDERDKRRWLKSYIETILERDIPKRAGirDPELLRRLLRSLASNLGQLFS 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699 231 YETLMKDMSygdegvsISAPTLKRYVDELKSLYLIDDLEGWepSLRAKSRVRTKPKRYFVDPSLPSALLGATPAVLARDT 310
Cdd:COG1373  235 YSKLANDLG-------ISKKTVKRYLDYLEDAFLIFRLPPY--DLNLKKRLRKSPKLYLVDTGLLNALLGLDPEELLLDS 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699 311 QTLGDLFETLVIRDLRVYlesmggANRIAYYRDEKGLEVDVILELvDGRWAAVEIKLSDlKVMEKNVDKLHAFKEKVcgn 390
Cdd:COG1373  306 EDLGALLENFVFLELLRR------GYEVYYWRTKDGAEVDFVLEK-GGKIIPIEVKYGE-NTRERELKSLKKFRDKY--- 374
                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 941094699 391 plsqvrePEFMAFIVGRGDIAYRRDDGILVLPIATL 426
Cdd:COG1373  375 -------GPAKGIVITLGDEGRLEIDGILVIPLWKL 403
DUF4143 pfam13635
Domain of unknown function (DUF4143); This domain is almost always found C-terminal to an ...
204-368 8.29e-36

Domain of unknown function (DUF4143); This domain is almost always found C-terminal to an ATPase core family.


Pssm-ID: 463942  Cd Length: 159  Bit Score: 129.26  E-value: 8.29e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699  204 IPKLG--LNPEIMRVLMKALAMNVAQAPTYETLmkdmsygDEGVSISAPTLKRYVDELKSLYLIDDLEGWEPSLRAksRV 281
Cdd:pfam13635   4 IAKLAgvRDPEKLRRLLRSLALQLGQLFNYSEL-------AKDLGVSRKTVARYLDLLELLFLIYRLPPWSRNLRK--RL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699  282 RTKPKRYFVDPSLPSALLGATPAVLARDTQTLGDLFETLVIRDLRVYLEsmGGANRIAYYRDEKGLEVDVILELVDGRWA 361
Cdd:pfam13635  75 VKSPKLYFADTGLLNALLGLDASDLLLDNPNKGALFENFVAQELLKRGY--YVEAALYYYRDKDGAEVDFVLELGGGRVI 152

                  ....*..
gi 941094699  362 AVEIKLS 368
Cdd:pfam13635 153 PIEVKAG 159
AAA_14 pfam13173
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ...
30-138 2.59e-15

AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 463799 [Multi-domain]  Cd Length: 128  Bit Score: 72.24  E-value: 2.59e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941094699   30 IVGPKWCGKTWTALAHASSVDR--------LDDSATYDAASNDPNLVLM----GEEPHLV-DEWQEVPAVWDAARRHVDD 96
Cdd:pfam13173   7 ITGPRQVGKTTLLLQLIKELLPpenilyinLDDPRLLKLADFELLELFLellyPGKTYLFlDEIQRVPDWELALKRLYDD 86
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 941094699   97 NANrkGQLILTGSSQPKETEKIHHSGTGRIARLHMRPMSLAE 138
Cdd:pfam13173  87 GPN--GRVILTGSSALLLSKEIAESLAGRVVVIELYPLSFRE 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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