|
Name |
Accession |
Description |
Interval |
E-value |
| tape_meas_lam_C |
TIGR01541 |
phage tail tape measure protein, lambda family; This model represents a relatively ... |
653-992 |
2.82e-118 |
|
phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273681 [Multi-domain] Cd Length: 332 Bit Score: 366.47 E-value: 2.82e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 653 KQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISqqdlqhqnaLNELKKKTLTLTSQLADEESRVRQQHAMA 732
Cdd:TIGR01541 1 NQLLLLTQQIADRKLKKLNTADEKSLQSRSDEIIALIKLEKL---------LEEAEQKALEALKKLAEATASIRAQNKRQ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 733 LATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTL 812
Cdd:TIGR01541 72 LDRFGLGDKQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKASLNEALAELHAYYAAEDALQGDWLA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 813 GASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLGSVLAMFGFG 892
Cdd:TIGR01541 152 GARSGLADYGETATNVASATAQLATNAFGGMASNIAQMATTGKANFKSFAVSVLSDIADIIAKLAIAGLAQSIGSLIGGA 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 893 TSAGGStPSGAYSSAALSVIPNADGGvYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAA 972
Cdd:TIGR01541 232 ASGGNS-SSGAMASYGAAYVPNFAGG-GYTAGGGKYEPSGVVHPGEFVFTKGATRIGEGNLYAIMRGYAGGGGVLGVVAA 309
|
330 340
....*....|....*....|...
gi 940351683 973 GSGGMA---MFAPEYNIEIHNDA 992
Cdd:TIGR01541 310 GSGGLGpngMFGGETAISINNDG 332
|
|
| TMP_2 |
pfam06791 |
Prophage tail length tape measure protein; This family represents a conserved region located ... |
229-426 |
9.38e-50 |
|
Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.
Pssm-ID: 429120 Cd Length: 205 Bit Score: 174.83 E-value: 9.38e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 229 LERTGTATHTLGLKSAAARRELGVLAGELARGN----------------FGalrGSGITLANRAGWIEQLMSPKGMMLGG 292
Cdd:pfam06791 1 MEAAGKSAKQTAAAMRNLPAQFTDIATSLAGGQspltvllqqggqikdmFG---GIGPALKALGGYVLGLINPLTLAAAA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 293 LAGgvaaavYGLGKAYYEGAKESETFNKQLILTGSYAGKTTGQLNAMAKSLAGNGVTQHDAAGVLAQVVGSGAFTGQAVA 372
Cdd:pfam06791 78 AAV------GALALAYYKGAEEADAFNKALILTGNAAGTTASQLAAMAEAIAAAGGTQGAAAEALAALASTGKIGGEQLE 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 940351683 373 MVSRTATRMQENVGQSVDETIRQFKRLRDDPVNAAKELDRTLHFLTSTQLEQIR 426
Cdd:pfam06791 152 GVIRAAARMEKATGQSVDETAKDFAKLADDPLKAALKLNEQYHFLTAATYEQIK 205
|
|
| COG5281 |
COG5281 |
Phage-related minor tail protein [Mobilome: prophages, transposons]; |
431-1031 |
2.68e-38 |
|
Phage-related minor tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444092 [Multi-domain] Cd Length: 603 Bit Score: 152.46 E-value: 2.68e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 431 QGRVADAAKIAMSAYSEEMNKRMGDVHDNLGWIERAWNAVGDAAKWAWDRMLDIGREDTLDEKIATLQEKIARGRKTPWT 510
Cdd:COG5281 2 AALAAAAALAAAAAAAAASAAAAAAAAALAAAAAAAAAAAGLAAAAAAAAAASLAAAAAAAALAAAAAAAAAAAAADALA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 511 VSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRN 590
Cdd:COG5281 82 AALAEDAAAAAAAAEAALAALAAAALALAAAALAEAALAAAAAAAAAAAAAAAAAAAAAAAAAEAAKAAAAAAAAAALAA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 591 AALERENERHKKALSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:COG5281 162 AAAAAAAAAAAAAAAAALAAASAAAAAAAAKAAAEAAAEAAAAAEAAAAAAAAAAEAAAAEAQALAAAALAEQAALAAAS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 671 TADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRGRYEERL 750
Cdd:COG5281 242 AAAQALAALAAAAAAAALALAAAAELALTAQAEAAAAAAAAAAAAAQAAEAAAAAAEAQALAAAAAAAAAQLAAAAAAAA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 751 KIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTLGASRALDNFLAQGGNVAG 830
Cdd:COG5281 322 QALRAAAQALAALAQRALAAAALAAAAQEAALAAAAAALQAALEAAAAAAAAELAAAGDWAAGAKAALAEYADSATNVAA 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 831 MTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSI--LADLAKMEARIAASKLLGSVLAMFGFGTSAGGSTPSGAyssaa 908
Cdd:COG5281 402 QVAQAATSAFSGLTDALAGAVTTGKLLFDALASSIasIADALANAALASAADALGGALAGALGGLFGGGGGAAAG----- 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 909 lsvipnadGGVYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAAGSGGMA--MFAPEYNI 986
Cdd:COG5281 477 --------AAVYAGALGPFASGGVVSGPTFFAMAGGAGLMGEAGPEAIMPLARGADGRLGVAAAGGGGGAavVVNITTPD 548
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 940351683 987 EIHNDAGNGQIGPQALQAVYNIGKKAAIDFWQQQSRDGGIAGGGR 1031
Cdd:COG5281 549 AAGFRRSQAQIAAQVARAVARGGRGLAAAAAAAGAADGGAGGGAA 593
|
|
| Tape_meas_lam_C |
pfam09718 |
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively ... |
808-883 |
3.80e-23 |
|
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively well-conserved region near the C terminus of the tape measure protein of a lambda and related phage. The protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behaviour is attributed to proteins from distantly related or unrelated families in other phage.
Pssm-ID: 430770 [Multi-domain] Cd Length: 76 Bit Score: 93.88 E-value: 3.80e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 940351683 808 GDWTLGASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLG 883
Cdd:pfam09718 1 GDWTDGAKRALAEYAEEASNAAGQVEEAFTSAFSGMEDALVEFVTTGKLNFSDFADSIIADLARIAARQAITGPLA 76
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
486-771 |
6.59e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 6.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 486 REDTLDEKIATLQEKIARGRKtpwtvsssQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQ----NAALN 561
Cdd:COG1196 240 ELEELEAELEELEAELEELEA--------ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdiarLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 562 RDNETESLRHQREVARITAMQYADAAVRNAALERENERHKKALSQQAKKpktYHNDEARRLLLQYSQQQAQTEGQLAAAK 641
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL---AEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 642 LSTTEKMTEAHKQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADE 721
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 940351683 722 ESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKG 771
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
515-795 |
3.62e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 515 QTEYDQQQLNELK---EQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVA-RITAMQYADAAVRN 590
Cdd:PTZ00121 1399 KAEEDKKKADELKkaaAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKkKAEEAKKADEAKKK 1478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 591 AALERENERHKKALSQQAKKPktyhnDEARRlllqysqqqaQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKA-----DEAKK----------AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 671 TADEQSVLAHKDEIALALQKLDISQQ---------DLQHQNALNELKKKTLTLTSQLADEESRVRQQHA-MALATMGMGD 740
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAkkaeedknmALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkKAEEAKIKAE 1623
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 940351683 741 QQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAE 795
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
498-795 |
3.91e-05 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 47.44 E-value: 3.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 498 QEKIARGRKTPWTV-------------SSSQTEYDQQQLNELKEQKRQKDL-LDAKAQAERNYQETQKRRNEQNAALNRD 563
Cdd:pfam09731 88 QVKIPRQSGVSSEVaeeekeatkdaaeAKAQLPKSEQEKEKALEEVLKEAIsKAESATAVAKEAKDDAIQAVKAHTDSLK 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 564 NETESLRHQREVARITAMQYADAAVRNAALERENERhkkalsQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKls 643
Cdd:pfam09731 168 EASDTAEISREKATDSALQKAEALAEKLKEVINLAK------QSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQ-- 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 644 TTEKMTEAHKQLLS-----FQQRIA----DLS------GKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELK 708
Cdd:pfam09731 240 SLAKLVDQYKELVAserivFQQELVsifpDIIpvlkedNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIERALE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 709 KKTLTLTSQlaDEESRVRQQHAMALATMGMGDQQRgryEERLKIQQHYQEQLE-QLKRDSKAKGTYGSDEYRQAEQALKG 787
Cdd:pfam09731 320 KQKEELDKL--AEELSARLEEVRAADEAQLRLEFE---REREEIRESYEEKLRtELERQAEAHEEHLKDVLVEQEIELQR 394
|
....*...
gi 940351683 788 SLDRRLAE 795
Cdd:pfam09731 395 EFLQDIKE 402
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
486-786 |
4.02e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 4.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 486 REDTLDEKIATLQEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERnYQETQKRRNEQNAALNRdne 565
Cdd:TIGR00618 213 MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE-LRAQEAVLEETQERINR--- 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 566 teslrhQREVARITAMQYADAAVRnaalERENERHKKALSQQAKKPKTYHndeaRRLLLQYSQQQAQTEGQLAAAKLSTT 645
Cdd:TIGR00618 289 ------ARKAAPLAAHIKAVTQIE----QQAQRIHTELQSKMRSRAKLLM----KRAAHVKQQSSIEEQRRLLQTLHSQE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 646 EKMTEAHKQLLSFQQRIAdlsgkKLTADEQSVLAHKDEIALALQKLDISQQDLQhqnALNELKKKTLTLTSqladEESRV 725
Cdd:TIGR00618 355 IHIRDAHEVATSIREISC-----QQHTLTQHIHTLQQQKTTLTQKLQSLCKELD---ILQREQATIDTRTS----AFRDL 422
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 940351683 726 RQQHAMALATMGMgdQQRGRYEERLKIQQHYQEQleQLKRDSKAKGTYGSDEYRQAEQALK 786
Cdd:TIGR00618 423 QGQLAHAKKQQEL--QQRYAELCAAAITCTAQCE--KLEKIHLQESAQSLKEREQQLQTKE 479
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
421-794 |
7.66e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 7.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 421 QLEQIRVLGEQGRVADAAKIAMSAYSEEMNKRMGDVHDNlgwierawnavGDAAKWAWDRMLDIGREDTL---DEKIATL 497
Cdd:PTZ00121 1213 KAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN-----------EEIRKFEEARMAHFARRQAAikaEEARKAD 1281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 498 QEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNA---------ALNRDNETES 568
Cdd:PTZ00121 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaeaakaeAEAAADEAEA 1361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 569 LRHQREVARIT---AMQYADAAVRNAALERENERHKKALSQQAKKPktyhnDEARRlllqysQQQAQTEGQLAAAKLSTT 645
Cdd:PTZ00121 1362 AEEKAEAAEKKkeeAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA-----DELKK------AAAAKKKADEAKKKAEEK 1430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 646 EKMTEAHKQllSFQQRIADLSGKKltADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQlADE---- 721
Cdd:PTZ00121 1431 KKADEAKKK--AEEAKKADEAKKK--AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK-ADEakka 1505
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 940351683 722 -ESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLA 794
Cdd:PTZ00121 1506 aEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| tape_meas_lam_C |
TIGR01541 |
phage tail tape measure protein, lambda family; This model represents a relatively ... |
653-992 |
2.82e-118 |
|
phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273681 [Multi-domain] Cd Length: 332 Bit Score: 366.47 E-value: 2.82e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 653 KQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISqqdlqhqnaLNELKKKTLTLTSQLADEESRVRQQHAMA 732
Cdd:TIGR01541 1 NQLLLLTQQIADRKLKKLNTADEKSLQSRSDEIIALIKLEKL---------LEEAEQKALEALKKLAEATASIRAQNKRQ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 733 LATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTL 812
Cdd:TIGR01541 72 LDRFGLGDKQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKASLNEALAELHAYYAAEDALQGDWLA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 813 GASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLGSVLAMFGFG 892
Cdd:TIGR01541 152 GARSGLADYGETATNVASATAQLATNAFGGMASNIAQMATTGKANFKSFAVSVLSDIADIIAKLAIAGLAQSIGSLIGGA 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 893 TSAGGStPSGAYSSAALSVIPNADGGvYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAA 972
Cdd:TIGR01541 232 ASGGNS-SSGAMASYGAAYVPNFAGG-GYTAGGGKYEPSGVVHPGEFVFTKGATRIGEGNLYAIMRGYAGGGGVLGVVAA 309
|
330 340
....*....|....*....|...
gi 940351683 973 GSGGMA---MFAPEYNIEIHNDA 992
Cdd:TIGR01541 310 GSGGLGpngMFGGETAISINNDG 332
|
|
| TMP_2 |
pfam06791 |
Prophage tail length tape measure protein; This family represents a conserved region located ... |
229-426 |
9.38e-50 |
|
Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.
Pssm-ID: 429120 Cd Length: 205 Bit Score: 174.83 E-value: 9.38e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 229 LERTGTATHTLGLKSAAARRELGVLAGELARGN----------------FGalrGSGITLANRAGWIEQLMSPKGMMLGG 292
Cdd:pfam06791 1 MEAAGKSAKQTAAAMRNLPAQFTDIATSLAGGQspltvllqqggqikdmFG---GIGPALKALGGYVLGLINPLTLAAAA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 293 LAGgvaaavYGLGKAYYEGAKESETFNKQLILTGSYAGKTTGQLNAMAKSLAGNGVTQHDAAGVLAQVVGSGAFTGQAVA 372
Cdd:pfam06791 78 AAV------GALALAYYKGAEEADAFNKALILTGNAAGTTASQLAAMAEAIAAAGGTQGAAAEALAALASTGKIGGEQLE 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 940351683 373 MVSRTATRMQENVGQSVDETIRQFKRLRDDPVNAAKELDRTLHFLTSTQLEQIR 426
Cdd:pfam06791 152 GVIRAAARMEKATGQSVDETAKDFAKLADDPLKAALKLNEQYHFLTAATYEQIK 205
|
|
| COG5281 |
COG5281 |
Phage-related minor tail protein [Mobilome: prophages, transposons]; |
431-1031 |
2.68e-38 |
|
Phage-related minor tail protein [Mobilome: prophages, transposons];
Pssm-ID: 444092 [Multi-domain] Cd Length: 603 Bit Score: 152.46 E-value: 2.68e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 431 QGRVADAAKIAMSAYSEEMNKRMGDVHDNLGWIERAWNAVGDAAKWAWDRMLDIGREDTLDEKIATLQEKIARGRKTPWT 510
Cdd:COG5281 2 AALAAAAALAAAAAAAAASAAAAAAAAALAAAAAAAAAAAGLAAAAAAAAAASLAAAAAAAALAAAAAAAAAAAAADALA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 511 VSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRN 590
Cdd:COG5281 82 AALAEDAAAAAAAAEAALAALAAAALALAAAALAEAALAAAAAAAAAAAAAAAAAAAAAAAAAEAAKAAAAAAAAAALAA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 591 AALERENERHKKALSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:COG5281 162 AAAAAAAAAAAAAAAAALAAASAAAAAAAAKAAAEAAAEAAAAAEAAAAAAAAAAEAAAAEAQALAAAALAEQAALAAAS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 671 TADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRGRYEERL 750
Cdd:COG5281 242 AAAQALAALAAAAAAAALALAAAAELALTAQAEAAAAAAAAAAAAAQAAEAAAAAAEAQALAAAAAAAAAQLAAAAAAAA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 751 KIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTLGASRALDNFLAQGGNVAG 830
Cdd:COG5281 322 QALRAAAQALAALAQRALAAAALAAAAQEAALAAAAAALQAALEAAAAAAAAELAAAGDWAAGAKAALAEYADSATNVAA 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 831 MTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSI--LADLAKMEARIAASKLLGSVLAMFGFGTSAGGSTPSGAyssaa 908
Cdd:COG5281 402 QVAQAATSAFSGLTDALAGAVTTGKLLFDALASSIasIADALANAALASAADALGGALAGALGGLFGGGGGAAAG----- 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 909 lsvipnadGGVYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAAGSGGMA--MFAPEYNI 986
Cdd:COG5281 477 --------AAVYAGALGPFASGGVVSGPTFFAMAGGAGLMGEAGPEAIMPLARGADGRLGVAAAGGGGGAavVVNITTPD 548
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 940351683 987 EIHNDAGNGQIGPQALQAVYNIGKKAAIDFWQQQSRDGGIAGGGR 1031
Cdd:COG5281 549 AAGFRRSQAQIAAQVARAVARGGRGLAAAAAAAGAADGGAGGGAA 593
|
|
| Tape_meas_lam_C |
pfam09718 |
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively ... |
808-883 |
3.80e-23 |
|
Lambda phage tail tape-measure protein (Tape_meas_lam_C); This represents a relatively well-conserved region near the C terminus of the tape measure protein of a lambda and related phage. The protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behaviour is attributed to proteins from distantly related or unrelated families in other phage.
Pssm-ID: 430770 [Multi-domain] Cd Length: 76 Bit Score: 93.88 E-value: 3.80e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 940351683 808 GDWTLGASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLG 883
Cdd:pfam09718 1 GDWTDGAKRALAEYAEEASNAAGQVEEAFTSAFSGMEDALVEFVTTGKLNFSDFADSIIADLARIAARQAITGPLA 76
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
486-771 |
6.59e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 6.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 486 REDTLDEKIATLQEKIARGRKtpwtvsssQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQ----NAALN 561
Cdd:COG1196 240 ELEELEAELEELEAELEELEA--------ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdiarLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 562 RDNETESLRHQREVARITAMQYADAAVRNAALERENERHKKALSQQAKKpktYHNDEARRLLLQYSQQQAQTEGQLAAAK 641
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL---AEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 642 LSTTEKMTEAHKQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADE 721
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 940351683 722 ESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKG 771
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
520-823 |
1.52e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 520 QQQLNELKEQKRQKDLLDAKAQAERnyQETQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRNAALERENER 599
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAEL--AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 600 HKKALSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKLS---TTEKMTEAHKQLLSFQQRIADLSGKKLTADEQS 676
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAElaeAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 677 VLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHY 756
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 757 QEQLEQLKR---DSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTLGASRALDNFLA 823
Cdd:COG1196 476 EAALAELLEelaEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALA 545
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
515-807 |
1.75e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 515 QTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRR-NEQNAALNRDNETESLRHQREVARITAMQyadAAVRNAAL 593
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEElEAELAELEAELEELRLELEELELELEEAQ---AEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 594 ERENERHKKALSQQAKKpktyhndEARRLLLQYSQQQAQTEGQLAAAK---LSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:COG1196 296 ELARLEQDIARLEERRR-------ELEERLEELEEELAELEEELEELEeelEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 671 TADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRGRYEERL 750
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 940351683 751 KIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQ 807
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
521-818 |
2.92e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 521 QQLNELKEQKRqkdlldakaQAERnYQE--TQKRRNEQNAALNRDNE-TESLRHQREVARITAMQYADAAVRNAALEREN 597
Cdd:COG1196 200 RQLEPLERQAE---------KAER-YRElkEELKELEAELLLLKLRElEAELEELEAELEELEAELEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 598 ERHKKALSQQAKKpktyhNDEARRLLLQYSQQQAQTEGQLAAAKL---STTEKMTEAHKQLLSFQQRIADLSGKKLTADE 674
Cdd:COG1196 270 EELRLELEELELE-----LEEAQAEEYELLAELARLEQDIARLEErrrELEERLEELEEELAELEEELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 675 QSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRGRYEERLKIQQ 754
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 755 HYQEQLEQLK------RDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQGDWTLGASRAL 818
Cdd:COG1196 425 ELEEALAELEeeeeeeEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
515-795 |
3.62e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 515 QTEYDQQQLNELK---EQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVA-RITAMQYADAAVRN 590
Cdd:PTZ00121 1399 KAEEDKKKADELKkaaAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKkKAEEAKKADEAKKK 1478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 591 AALERENERHKKALSQQAKKPktyhnDEARRlllqysqqqaQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKA-----DEAKK----------AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 671 TADEQSVLAHKDEIALALQKLDISQQ---------DLQHQNALNELKKKTLTLTSQLADEESRVRQQHA-MALATMGMGD 740
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAkkaeedknmALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkKAEEAKIKAE 1623
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 940351683 741 QQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAE 795
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
498-795 |
3.91e-05 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 47.44 E-value: 3.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 498 QEKIARGRKTPWTV-------------SSSQTEYDQQQLNELKEQKRQKDL-LDAKAQAERNYQETQKRRNEQNAALNRD 563
Cdd:pfam09731 88 QVKIPRQSGVSSEVaeeekeatkdaaeAKAQLPKSEQEKEKALEEVLKEAIsKAESATAVAKEAKDDAIQAVKAHTDSLK 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 564 NETESLRHQREVARITAMQYADAAVRNAALERENERhkkalsQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKls 643
Cdd:pfam09731 168 EASDTAEISREKATDSALQKAEALAEKLKEVINLAK------QSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQ-- 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 644 TTEKMTEAHKQLLS-----FQQRIA----DLS------GKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELK 708
Cdd:pfam09731 240 SLAKLVDQYKELVAserivFQQELVsifpDIIpvlkedNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIERALE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 709 KKTLTLTSQlaDEESRVRQQHAMALATMGMGDQQRgryEERLKIQQHYQEQLE-QLKRDSKAKGTYGSDEYRQAEQALKG 787
Cdd:pfam09731 320 KQKEELDKL--AEELSARLEEVRAADEAQLRLEFE---REREEIRESYEEKLRtELERQAEAHEEHLKDVLVEQEIELQR 394
|
....*...
gi 940351683 788 SLDRRLAE 795
Cdd:pfam09731 395 EFLQDIKE 402
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
486-786 |
4.02e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 4.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 486 REDTLDEKIATLQEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERnYQETQKRRNEQNAALNRdne 565
Cdd:TIGR00618 213 MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE-LRAQEAVLEETQERINR--- 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 566 teslrhQREVARITAMQYADAAVRnaalERENERHKKALSQQAKKPKTYHndeaRRLLLQYSQQQAQTEGQLAAAKLSTT 645
Cdd:TIGR00618 289 ------ARKAAPLAAHIKAVTQIE----QQAQRIHTELQSKMRSRAKLLM----KRAAHVKQQSSIEEQRRLLQTLHSQE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 646 EKMTEAHKQLLSFQQRIAdlsgkKLTADEQSVLAHKDEIALALQKLDISQQDLQhqnALNELKKKTLTLTSqladEESRV 725
Cdd:TIGR00618 355 IHIRDAHEVATSIREISC-----QQHTLTQHIHTLQQQKTTLTQKLQSLCKELD---ILQREQATIDTRTS----AFRDL 422
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 940351683 726 RQQHAMALATMGMgdQQRGRYEERLKIQQHYQEQleQLKRDSKAKGTYGSDEYRQAEQALK 786
Cdd:TIGR00618 423 QGQLAHAKKQQEL--QQRYAELCAAAITCTAQCE--KLEKIHLQESAQSLKEREQQLQTKE 479
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
507-791 |
6.25e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 6.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 507 TP-WTVS-SSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVARITAMQ-- 582
Cdd:pfam17380 253 TPeYTVRyNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDrq 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 583 ---YAD----AAVRNAALER----ENERHKKALSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKlstTEKMTEA 651
Cdd:pfam17380 333 aaiYAEqermAMERERELERirqeERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAAR---KVKILEE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 652 HKQLLSFQQR--IADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQ-----NALNELKKKTLTL-----TSQLA 719
Cdd:pfam17380 410 ERQRKIQQQKveMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQverlrQQEEERKRKKLELekekrDRKRA 489
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 940351683 720 DEESRVRQQHAMALATMGMGDQQRGR--YEERLKIQQH--YQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDR 791
Cdd:pfam17380 490 EEQRRKILEKELEERKQAMIEEERKRklLEKEMEERQKaiYEEERRREAEEERRKQQEMEERRRIQEQMRKATEER 565
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
515-794 |
1.41e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 515 QTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRNAALE 594
Cdd:TIGR00618 603 LSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAL 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 595 RENERHKKALSqqAKKPKTYHNDEARRLLLQ----YSQQQAQTEGQLAAAKlSTTEKMTEAHKQLLSFQQRIADLSGKKL 670
Cdd:TIGR00618 683 QKMQSEKEQLT--YWKEMLAQCQTLLRELEThieeYDREFNEIENASSSLG-SDLAAREDALNQSLKELMHQARTVLKAR 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 671 T-ADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQ------------------LADEESRVRQQHAM 731
Cdd:TIGR00618 760 TeAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEigqeipsdedilnlqcetLVQEEEQFLSRLEE 839
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 732 ALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGS-------DEYRQAEQALKGSLDRRLA 794
Cdd:TIGR00618 840 KSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQikiqfdgDALIKFLHEITLYANVRLA 909
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
524-724 |
1.83e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 524 NELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRdnetesLRHQREVARITAMQyaDAAVRNAALERENERHKKA 603
Cdd:COG4913 242 EALEDAREQIELLEPIRELAERYAAARERLAELEYLRAA------LRLWFAQRRLELLE--AELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 604 LSQQAKKpktyHNDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIADLsGKKLTADEQSVLAHKDE 683
Cdd:COG4913 314 LEARLDA----LREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAAL-GLPLPASAEEFAALRAE 388
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 940351683 684 IALALQKLDISQQDLQ-----HQNALNELKKKTLTLTSQLADEESR 724
Cdd:COG4913 389 AAALLEALEEELEALEealaeAEAALRDLRRELRELEAEIASLERR 434
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
595-807 |
4.51e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 4.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 595 RENERHKKALSQQAKKPKTYHndearrlllQYSQQQAQTEGQLAAAKLsttekmTEAHKQLLSFQQRIADLSGKKLTADE 674
Cdd:TIGR02168 196 NELERQLKSLERQAEKAERYK---------ELKAELRELELALLVLRL------EELREELEELQEELKEAEEELEELTA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 675 QSVLAHK--DEIALALQKLDISQQDLQHqnALNELKKKTLTLTSQLA---DEESRVRQQHAMALATMGMGDQQRGRYEER 749
Cdd:TIGR02168 261 ELQELEEklEELRLEVSELEEEIEELQK--ELYALANEISRLEQQKQilrERLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 940351683 750 LKIQQHYQEQLEQLKRDSKAKGtygsDEYRQAEQALKGSLDRRLAEWADYNAKVDAAQ 807
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAEL----EELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
421-794 |
7.66e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 7.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 421 QLEQIRVLGEQGRVADAAKIAMSAYSEEMNKRMGDVHDNlgwierawnavGDAAKWAWDRMLDIGREDTL---DEKIATL 497
Cdd:PTZ00121 1213 KAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN-----------EEIRKFEEARMAHFARRQAAikaEEARKAD 1281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 498 QEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNA---------ALNRDNETES 568
Cdd:PTZ00121 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaeaakaeAEAAADEAEA 1361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 569 LRHQREVARIT---AMQYADAAVRNAALERENERHKKALSQQAKKPktyhnDEARRlllqysQQQAQTEGQLAAAKLSTT 645
Cdd:PTZ00121 1362 AEEKAEAAEKKkeeAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA-----DELKK------AAAAKKKADEAKKKAEEK 1430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 646 EKMTEAHKQllSFQQRIADLSGKKltADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQlADE---- 721
Cdd:PTZ00121 1431 KKADEAKKK--AEEAKKADEAKKK--AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK-ADEakka 1505
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 940351683 722 -ESRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLA 794
Cdd:PTZ00121 1506 aEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
492-793 |
1.61e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 492 EKIATLQEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRH 571
Cdd:PTZ00121 1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 572 QREVARITAMQYADAAVRNAALERENERHKKAlSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMTEA 651
Cdd:PTZ00121 1511 KADEAKKAEEAKKADEAKKAEEAKKADEAKKA-EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKA 1589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 652 HKQLLSFQQRIADlSGKKLTADEQSVLAHKDEIALALQKL-DISQQDLQHQNALNELKKKTLTLTSqlADEESRVRQQHA 730
Cdd:PTZ00121 1590 EEARIEEVMKLYE-EEKKMKAEEAKKAEEAKIKAEELKKAeEEKKKVEQLKKKEAEEKKKAEELKK--AEEENKIKAAEE 1666
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 940351683 731 MALAtmgmgDQQRGRYEERLKIQQHYQEQLEQLKRDSKAK------GTYGSDEYRQAEQALKGSLDRRL 793
Cdd:PTZ00121 1667 AKKA-----EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaeelKKKEAEEKKKAEELKKAEEENKI 1730
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
492-795 |
1.78e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 492 EKIATLQEKIARGRKTPWTVSSSQTEYDQQQLNELKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRH 571
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 572 QREVARITAMQYADAA-----VRNAALERENERHKKA----LSQQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKL 642
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAkkaeeKKKADELKKAEELKKAeekkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 643 STTEKMTEAHKQLlsfQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEE 722
Cdd:PTZ00121 1604 EKKMKAEEAKKAE---EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 940351683 723 SRVRQQHAMALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAE 795
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
521-790 |
3.33e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 521 QQLNELKEQKRQKDL------LDAKAQAERNYQETQKRRNEQNAALNRD--------NETESLRH--QREVARITAMQYA 584
Cdd:TIGR02168 213 ERYKELKAELRELELallvlrLEELREELEELQEELKEAEEELEELTAElqeleeklEELRLEVSelEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 585 dAAVRNAALERENERHKKALSQQAKKPKTYhnDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMTEAHKQLLSFQQRIAD 664
Cdd:TIGR02168 293 -LANEISRLEQQKQILRERLANLERQLEEL--EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 665 LSGKKLTADEQsVLAHKDEIALALQKldISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGDQQRG 744
Cdd:TIGR02168 370 LESRLEELEEQ-LETLRSKVAQLELQ--IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 940351683 745 RYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLD 790
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
526-766 |
3.81e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 526 LKEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNETESLRHQREVaritamqyadaavrNAALERENERHKKALS 605
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEEL--------------QEELKEAEEELEELTA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 606 QQAKKPKTYHNDEARRLLLQYSQQQAQTEGQLAAAKLSTTEKMteahKQLLSFQQRIADLSGKKLTADEQSVLAHKDEIA 685
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ----KQILRERLANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 686 LALQKLDISQQDLQHQ-----NALNELKKKTLTLTSQLAD-EESRVRQQHAMALATMGMGDQ--QRGRYEERLKIQQHYQ 757
Cdd:TIGR02168 337 EELAELEEKLEELKEElesleAELEELEAELEELESRLEElEEQLETLRSKVAQLELQIASLnnEIERLEARLERLEDRR 416
|
....*....
gi 940351683 758 EQLEQLKRD 766
Cdd:TIGR02168 417 ERLQQEIEE 425
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
566-824 |
6.27e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 6.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 566 TESLRHQREVARITAMQYADAAVRNAALERENERHKKALS--QQAKkpktyhnDEARRLLLQYSQ-QQA--QTEGQLAAA 640
Cdd:COG3096 360 TERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyQQAL-------DVQQTRAIQYQQaVQAleKARALCGLP 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 641 KLSTT----------EKMTEAHKQLLSFQQRIADlsgkkltADeqsvlAHKDEIALALQKL-------------DISQQD 697
Cdd:COG3096 433 DLTPEnaedylaafrAKEQQATEEVLELEQKLSV-------AD-----AARRQFEKAYELVckiageversqawQTAREL 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 940351683 698 LQHQNALNELKKKTLTLTSQLADEESRVRQQH-AMALATmGMGDQQRGRYEERLKIQQHYQEQLEQLKR--DSKAKGTYG 774
Cdd:COG3096 501 LRRYRSQQALAQRLQQLRAQLAELEQRLRQQQnAERLLE-EFCQRIGQQLDAAEELEELLAELEAQLEEleEQAAEAVEQ 579
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 940351683 775 SDEYRQAEQALKG---SLDRRLAEWADYNAKVD--AAQGDWTLGASRALDNFLAQ 824
Cdd:COG3096 580 RSELRQQLEQLRArikELAARAPAWLAAQDALErlREQSGEALADSQEVTAAMQQ 634
|
|
| |
