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Conserved domains on  [gi|938339322|ref|YP_009171523|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Pseudothericles compressifrons]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-155 1.87e-27

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 100.27  E-value: 1.87e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339322   3 QSMLYSTSAIMSMSFTMTSHPMSMVMIILIQAMMVCLMTGYLMKSFWMSYILFLIFLGGMMVLFIYITSIASNEMFSMKS 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 938339322  83 KNIIMMSSMLISMIMMLMIMDKQMIINMNNSDMIDLFTmeykkesnspLIKLFNKPSFIMSIMMMIYLFIALM 155
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFS----------LSKLYNFPTMLITLFMIIYLLLTLI 143
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-155 1.87e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 100.27  E-value: 1.87e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339322   3 QSMLYSTSAIMSMSFTMTSHPMSMVMIILIQAMMVCLMTGYLMKSFWMSYILFLIFLGGMMVLFIYITSIASNEMFSMKS 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 938339322  83 KNIIMMSSMLISMIMMLMIMDKQMIINMNNSDMIDLFTmeykkesnspLIKLFNKPSFIMSIMMMIYLFIALM 155
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFS----------LSKLYNFPTMLITLFMIIYLLLTLI 143
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-155 1.87e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 100.27  E-value: 1.87e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339322   3 QSMLYSTSAIMSMSFTMTSHPMSMVMIILIQAMMVCLMTGYLMKSFWMSYILFLIFLGGMMVLFIYITSIASNEMFSMKS 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 938339322  83 KNIIMMSSMLISMIMMLMIMDKQMIINMNNSDMIDLFTmeykkesnspLIKLFNKPSFIMSIMMMIYLFIALM 155
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFS----------LSKLYNFPTMLITLFMIIYLLLTLI 143
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-81 2.57e-06

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 44.61  E-value: 2.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339322   1 MIQSMLYSTSAIMSMSFTMTSHPMSMVMIILIQAMMVCLMTGYLMkSFWMSYILFLIFLGGMMVLFIYITSIASNEMFSM 80
Cdd:MTH00212   1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMES-NSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79


                 .
gi 938339322  81 K 81
Cdd:MTH00212  80 K 80
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 5-121 3.17e-06

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 44.49  E-value: 3.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938339322   5 MLYSTSAIMSMSFTMTSHPMSMVMIILIQAMMVCLMTGYLMkSFWMSYILFLIFLGGMMVLFIYITSIASNEMFSMKSKN 84
Cdd:MTH00152   5 ILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTL-SSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNFKF 83

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 938339322  85 IIMMSSMLISMIMMLMIMDKQMIINMNNSDMIDLFTM 121
Cdd:MTH00152  84 VFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSG 120
ND6 MTH00064
NADH dehydrogenase subunit 6; Provisional
 1-78 2.02e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177136  Cd Length: 151  Bit Score: 36.38  E-value: 2.02e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 938339322   1 MIQSMLYSTSAIMSMSFTMTSHPMSMVMIILIQAMMVCLMTGYLMKSFWMSYILFLIFLGGMMVLFIYITSIASNEMF 78
Cdd:MTH00064   1 MLLEVLFSLYFIVLVLFSFSSHPVYYCVLLVVNSLISSLICYLVYGFSWYSLLFCLVYVGGVYILFIFVSVFSPNSSF 78
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 38-73 5.95e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 35.21  E-value: 5.95e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 938339322  38 CLMTGYLMKSFwMSYILFLIFLGGMMVLFIYITSIA 73
Cdd:MTH00065  40 CLVLVELGVSF-LSLVLFLIYLGGMLVVFAYSAALA 74
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 51-68 7.24e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 35.12  E-value: 7.24e-03
                         10
                 ....*....|....*...
gi 938339322  51 SYILFLIFLGGMMVLFIY 68
Cdd:MTH00138  52 SLVLFLIYLGGMLVVFAY 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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