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Conserved domains on  [gi|937922670|dbj|BAS97587|]
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Os06g0335500, partial [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AUX_IAA super family cl03528
AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant ...
 4-70 1.51e-43

AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.


The actual alignment was detected with superfamily member pfam02309:

Pssm-ID: 460529  Cd Length: 188  Bit Score: 138.55  E-value: 1.51e-43
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937922670    4 SNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPR 70
Cdd:pfam02309 122 SHGMPGRDGLNESKLSDLLDGSEYVLTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPR 188
 
Name Accession Description Interval E-value
AUX_IAA pfam02309
AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant ...
 4-70 1.51e-43

AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.


Pssm-ID: 460529  Cd Length: 188  Bit Score: 138.55  E-value: 1.51e-43
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937922670    4 SNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPR 70
Cdd:pfam02309 122 SHGMPGRDGLNESKLSDLLDGSEYVLTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPR 188
 
Name Accession Description Interval E-value
AUX_IAA pfam02309
AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant ...
 4-70 1.51e-43

AUX/IAA family; Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.


Pssm-ID: 460529  Cd Length: 188  Bit Score: 138.55  E-value: 1.51e-43
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937922670    4 SNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPR 70
Cdd:pfam02309 122 SHGMPGRDGLNESKLSDLLDGSEYVLTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPR 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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