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Os04g0625350, partial [Oryza sativa Japonica Group]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Npa1 super family | cl13202 | Ribosome 60S biogenesis N-terminal; Npa1p is required for ribosome biogenesis and operates in ... |
95-223 | 1.21e-07 | |||
Ribosome 60S biogenesis N-terminal; Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. The actual alignment was detected with superfamily member pfam11707: Pssm-ID: 463325 Cd Length: 332 Bit Score: 51.08 E-value: 1.21e-07
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Name | Accession | Description | Interval | E-value | |||
Npa1 | pfam11707 | Ribosome 60S biogenesis N-terminal; Npa1p is required for ribosome biogenesis and operates in ... |
95-223 | 1.21e-07 | |||
Ribosome 60S biogenesis N-terminal; Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. Pssm-ID: 463325 Cd Length: 332 Bit Score: 51.08 E-value: 1.21e-07
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Name | Accession | Description | Interval | E-value | |||
Npa1 | pfam11707 | Ribosome 60S biogenesis N-terminal; Npa1p is required for ribosome biogenesis and operates in ... |
95-223 | 1.21e-07 | |||
Ribosome 60S biogenesis N-terminal; Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. Pssm-ID: 463325 Cd Length: 332 Bit Score: 51.08 E-value: 1.21e-07
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Blast search parameters | ||||
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