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Conserved domains on  [gi|937349069|gb|ALI16106|]
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viral protein 1, partial [Norovirus GII/Hu/SI/2015/GII.4_Sydney2012/Ljubljana76]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Calici_coat_C super family cl07164
Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) ...
 63-176 6.37e-38

Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) C-terminal region.


The actual alignment was detected with superfamily member pfam08435:

Pssm-ID: 429995  Cd Length: 224  Bit Score: 129.67  E-value: 6.37e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937349069   63 YDPTEEiPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQ 142
Cdd:pfam08435   9 FDPTED-PAPLGFPDFGGCDWGVESQRNTNNGATRAHEAVIATNSAKFTPKLGSVQFSTWSTGDFLGNQPWRFTPVGIAG 87

                          90       100       110
                  ....*....|....*....|....*....|....
gi 937349069  143 DGGTthrnepQQWVLPSYSGRNTHNVHLAPAVAP 176
Cdd:pfam08435  88 DDWF------PQWTIPDYGGSLTLNTNLAPAVAP 115
 
Name Accession Description Interval E-value
Calici_coat_C pfam08435
Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) ...
 63-176 6.37e-38

Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) C-terminal region.


Pssm-ID: 429995  Cd Length: 224  Bit Score: 129.67  E-value: 6.37e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937349069   63 YDPTEEiPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQ 142
Cdd:pfam08435   9 FDPTED-PAPLGFPDFGGCDWGVESQRNTNNGATRAHEAVIATNSAKFTPKLGSVQFSTWSTGDFLGNQPWRFTPVGIAG 87

                          90       100       110
                  ....*....|....*....|....*....|....
gi 937349069  143 DGGTthrnepQQWVLPSYSGRNTHNVHLAPAVAP 176
Cdd:pfam08435  88 DDWF------PQWTIPDYGGSLTLNTNLAPAVAP 115
 
Name Accession Description Interval E-value
Calici_coat_C pfam08435
Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) ...
 63-176 6.37e-38

Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) C-terminal region.


Pssm-ID: 429995  Cd Length: 224  Bit Score: 129.67  E-value: 6.37e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937349069   63 YDPTEEiPAPLGTPDFVGKIQGVLTQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDHDFEANQNTKFTPVGVIQ 142
Cdd:pfam08435   9 FDPTED-PAPLGFPDFGGCDWGVESQRNTNNGATRAHEAVIATNSAKFTPKLGSVQFSTWSTGDFLGNQPWRFTPVGIAG 87

                          90       100       110
                  ....*....|....*....|....*....|....
gi 937349069  143 DGGTthrnepQQWVLPSYSGRNTHNVHLAPAVAP 176
Cdd:pfam08435  88 DDWF------PQWTIPDYGGSLTLNTNLAPAVAP 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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