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Conserved domains on  [gi|933521418|gb|ALG71737|]
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chemotaxis protein [Azospirillum thiophilum]

Protein Classification

methyl-accepting chemotaxis protein( domain architecture ID 11435591)

methyl-accepting chemotaxis protein (MCP) is a bacterial receptor that mediates chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behavior

CATH:  1.10.287.950
Gene Ontology:  GO:0006935
PubMed:  18165013|20738376

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
24-556 1.41e-61

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


:

Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 212.19  E-value: 1.41e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418  24 TVGLGLFSLSKLSAINTEAEDVRDNWLPSIVAISRLYTTFDFYRTVEGGHLIASTDADMAREEQALSEIANRIETRRIDY 103
Cdd:COG0840   14 LLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVLLALLLALLLLLL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 104 EKLLVPGWETETYRKFMTSYQNYMKISREQLLPLSRNNDNAAAGALFRGASRDEFRISKDLLQSLVDFNATEGKRSADHG 183
Cdd:COG0840   94 ALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAAAALAALLEAAALA 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 184 EEVYQSSKLWVAAILGLIVTVGIGAAWMIVATVLRPIEAITAVMGRLANRDMAVSIDgISRGDELGAMARAVQVFKDGLI 263
Cdd:COG0840  174 LAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRID-VDSKDEIGQLADAFNRMIENLR 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 264 EAdrlaraeaaeqqakarrtevierllagfETSSGTALRTVAAAASELDATAHSMSAMAQQTSTQATVVASAAEQTSANV 343
Cdd:COG0840  253 EL----------------------------VGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATV 304

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 344 QTVATATEEMASSIREIGSQISRSADIAGKAVN-------EATQTSNAVRSLAEAAQKIGEVVGLITDIASQTNLLALNA 416
Cdd:COG0840  305 QEVAENAQQAAELAEEASELAEEGGEVVEEAVEgieeireSVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNA 384

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 417 TIEAARAGEAGKGFAVVASEVKSLAGQTAKATEEIASQIGAIQQTTQGVVTAITGIGSTISSINDIT-------TGIAAA 489
Cdd:COG0840  385 AIEAARAGEAGRGFAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVeeagealEEIVEA 464

                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 933521418 490 IEEQSAATTEISRNVQQAAAGTQEVTGSILQVTQAAGEAGNAAGQVLDAAGELSQQAERMRHDVETF 556
Cdd:COG0840  465 VEEVSDLIQEIAAASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRF 531
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
24-556 1.41e-61

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 212.19  E-value: 1.41e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418  24 TVGLGLFSLSKLSAINTEAEDVRDNWLPSIVAISRLYTTFDFYRTVEGGHLIASTDADMAREEQALSEIANRIETRRIDY 103
Cdd:COG0840   14 LLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVLLALLLALLLLLL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 104 EKLLVPGWETETYRKFMTSYQNYMKISREQLLPLSRNNDNAAAGALFRGASRDEFRISKDLLQSLVDFNATEGKRSADHG 183
Cdd:COG0840   94 ALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAAAALAALLEAAALA 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 184 EEVYQSSKLWVAAILGLIVTVGIGAAWMIVATVLRPIEAITAVMGRLANRDMAVSIDgISRGDELGAMARAVQVFKDGLI 263
Cdd:COG0840  174 LAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRID-VDSKDEIGQLADAFNRMIENLR 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 264 EAdrlaraeaaeqqakarrtevierllagfETSSGTALRTVAAAASELDATAHSMSAMAQQTSTQATVVASAAEQTSANV 343
Cdd:COG0840  253 EL----------------------------VGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATV 304

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 344 QTVATATEEMASSIREIGSQISRSADIAGKAVN-------EATQTSNAVRSLAEAAQKIGEVVGLITDIASQTNLLALNA 416
Cdd:COG0840  305 QEVAENAQQAAELAEEASELAEEGGEVVEEAVEgieeireSVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNA 384

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 417 TIEAARAGEAGKGFAVVASEVKSLAGQTAKATEEIASQIGAIQQTTQGVVTAITGIGSTISSINDIT-------TGIAAA 489
Cdd:COG0840  385 AIEAARAGEAGRGFAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVeeagealEEIVEA 464

                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 933521418 490 IEEQSAATTEISRNVQQAAAGTQEVTGSILQVTQAAGEAGNAAGQVLDAAGELSQQAERMRHDVETF 556
Cdd:COG0840  465 VEEVSDLIQEIAAASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRF 531
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 303-556 7.64e-47

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 164.77  E-value: 7.64e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418   303 TVAAAASELDATAHSMSAMAQQTSTQATVVASAAEQTSANVQTVATATEEMASSIREIGSQISRSADIAGKAVNEATQTS 382
Cdd:smart00283   1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418   383 NAVRSLAEAAQKIGEVVGLITDIASQTNLLALNATIEAARAGEAGKGFAVVASEVKSLAGQTAKATEEIASQIGAIQQTT 462
Cdd:smart00283  81 SAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEET 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418   463 QGVVTAITGIGSTISSINDITT-------GIAAAIEEQSAATTEISRNVQQAAAGTQEVTGSILQVTQAAGEAGNAAGQV 535
Cdd:smart00283 161 NEAVAAMEESSSEVEEGVELVEetgdaleEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEI 240

                          250       260
                   ....*....|....*....|.
gi 933521418   536 LDAAGELSQQAERMRHDVETF 556
Cdd:smart00283 241 SAAAEELSGLAEELDELVERF 261
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 332-522 8.09e-41

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 146.23  E-value: 8.09e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 332 VASAAEQTSANVQTVATATEEMASSIREIGSQISRSADIAGKAVNEATQTSNAVRSLAEAAQKIGEVVGLITDIASQTNL 411
Cdd:cd11386    3 LSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQTNL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 412 LALNATIEAARAGEAGKGFAVVASEVKSLAGQTAKATEEIASQIGAIQQTTQGVVTAITGIGSTISSI-------NDITT 484
Cdd:cd11386   83 LALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGvelveetGRAFE 162

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 933521418 485 GIAAAIEEQSAATTEISRNVQQAAAGTQEVTGSILQVT 522
Cdd:cd11386  163 EIVASVEEVADGIQEISAATQEQSASTQEIAAAVEEIA 200
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 359-523 1.70e-28

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 111.37  E-value: 1.70e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418  359 EIGSQISRSADIAGKAVNeatQTSNAVRSLAEAAQKIGEVVGLITDIASQTNLLALNATIEAARAGEAGKGFAVVASEVK 438
Cdd:pfam00015   2 DLAQLASEEAQDGGKEVA---NVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQGRGFAVVADEVR 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418  439 SLAGQTAKATEEIASQIGAIQQTTQGVVTAITGIGSTISSINDIT-------TGIAAAIEEQSAATTEISRNVQQAAAGT 511
Cdd:pfam00015  79 KLAERSAQAAKEIEALIIEIQKQTNDSTASIESTRQRVEVGSTIVestgealKEIVDAVAEIADIVQEIAAASDEQSAGI 158

                         170
                  ....*....|..
gi 933521418  512 QEVTGSILQVTQ 523
Cdd:pfam00015 159 DQVNQAVARMDQ 170
PRK09793 PRK09793
methyl-accepting chemotaxis protein IV;
309-513 1.84e-26

methyl-accepting chemotaxis protein IV;


Pssm-ID: 182079 [Multi-domain]  Cd Length: 533  Bit Score: 113.24  E-value: 1.84e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 309 SELDATAHSMSAMAQQTstqatvvASAAEQTSANVQTVATATEEMASSIREIGSQISRSADIAGKAVNEATQTSNAVRSL 388
Cdd:PRK09793 278 AEIVAGNNDLSSRTEQQ-------AASLAQTAASMEQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEI 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 389 AEAAQKIGEVVGLITDIASQTNLLALNATIEAARAGEAGKGFAVVASEVKSLAGQTAKATEEIASQI----GAIQQTTQG 464
Cdd:PRK09793 351 ATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIeesvNRVQQGSKL 430

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 933521418 465 VVTA---ITGIGSTISSINDITTGIAAAIEEQSAATTEISRNVQQAAAGTQE 513
Cdd:PRK09793 431 VNNAaatMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQ 482
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
24-556 1.41e-61

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 212.19  E-value: 1.41e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418  24 TVGLGLFSLSKLSAINTEAEDVRDNWLPSIVAISRLYTTFDFYRTVEGGHLIASTDADMAREEQALSEIANRIETRRIDY 103
Cdd:COG0840   14 LLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVLLALLLALLLLLL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 104 EKLLVPGWETETYRKFMTSYQNYMKISREQLLPLSRNNDNAAAGALFRGASRDEFRISKDLLQSLVDFNATEGKRSADHG 183
Cdd:COG0840   94 ALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAAAALAALLEAAALA 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 184 EEVYQSSKLWVAAILGLIVTVGIGAAWMIVATVLRPIEAITAVMGRLANRDMAVSIDgISRGDELGAMARAVQVFKDGLI 263
Cdd:COG0840  174 LAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRID-VDSKDEIGQLADAFNRMIENLR 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 264 EAdrlaraeaaeqqakarrtevierllagfETSSGTALRTVAAAASELDATAHSMSAMAQQTSTQATVVASAAEQTSANV 343
Cdd:COG0840  253 EL----------------------------VGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATV 304

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 344 QTVATATEEMASSIREIGSQISRSADIAGKAVN-------EATQTSNAVRSLAEAAQKIGEVVGLITDIASQTNLLALNA 416
Cdd:COG0840  305 QEVAENAQQAAELAEEASELAEEGGEVVEEAVEgieeireSVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNA 384

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 417 TIEAARAGEAGKGFAVVASEVKSLAGQTAKATEEIASQIGAIQQTTQGVVTAITGIGSTISSINDIT-------TGIAAA 489
Cdd:COG0840  385 AIEAARAGEAGRGFAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVeeagealEEIVEA 464

                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 933521418 490 IEEQSAATTEISRNVQQAAAGTQEVTGSILQVTQAAGEAGNAAGQVLDAAGELSQQAERMRHDVETF 556
Cdd:COG0840  465 VEEVSDLIQEIAAASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRF 531
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 303-556 7.64e-47

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 164.77  E-value: 7.64e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418   303 TVAAAASELDATAHSMSAMAQQTSTQATVVASAAEQTSANVQTVATATEEMASSIREIGSQISRSADIAGKAVNEATQTS 382
Cdd:smart00283   1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418   383 NAVRSLAEAAQKIGEVVGLITDIASQTNLLALNATIEAARAGEAGKGFAVVASEVKSLAGQTAKATEEIASQIGAIQQTT 462
Cdd:smart00283  81 SAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEET 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418   463 QGVVTAITGIGSTISSINDITT-------GIAAAIEEQSAATTEISRNVQQAAAGTQEVTGSILQVTQAAGEAGNAAGQV 535
Cdd:smart00283 161 NEAVAAMEESSSEVEEGVELVEetgdaleEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEI 240

                          250       260
                   ....*....|....*....|.
gi 933521418   536 LDAAGELSQQAERMRHDVETF 556
Cdd:smart00283 241 SAAAEELSGLAEELDELVERF 261
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 332-522 8.09e-41

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 146.23  E-value: 8.09e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 332 VASAAEQTSANVQTVATATEEMASSIREIGSQISRSADIAGKAVNEATQTSNAVRSLAEAAQKIGEVVGLITDIASQTNL 411
Cdd:cd11386    3 LSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQTNL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 412 LALNATIEAARAGEAGKGFAVVASEVKSLAGQTAKATEEIASQIGAIQQTTQGVVTAITGIGSTISSI-------NDITT 484
Cdd:cd11386   83 LALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGvelveetGRAFE 162

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 933521418 485 GIAAAIEEQSAATTEISRNVQQAAAGTQEVTGSILQVT 522
Cdd:cd11386  163 EIVASVEEVADGIQEISAATQEQSASTQEIAAAVEEIA 200
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 359-523 1.70e-28

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 111.37  E-value: 1.70e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418  359 EIGSQISRSADIAGKAVNeatQTSNAVRSLAEAAQKIGEVVGLITDIASQTNLLALNATIEAARAGEAGKGFAVVASEVK 438
Cdd:pfam00015   2 DLAQLASEEAQDGGKEVA---NVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQGRGFAVVADEVR 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418  439 SLAGQTAKATEEIASQIGAIQQTTQGVVTAITGIGSTISSINDIT-------TGIAAAIEEQSAATTEISRNVQQAAAGT 511
Cdd:pfam00015  79 KLAERSAQAAKEIEALIIEIQKQTNDSTASIESTRQRVEVGSTIVestgealKEIVDAVAEIADIVQEIAAASDEQSAGI 158

                         170
                  ....*....|..
gi 933521418  512 QEVTGSILQVTQ 523
Cdd:pfam00015 159 DQVNQAVARMDQ 170
PRK09793 PRK09793
methyl-accepting chemotaxis protein IV;
309-513 1.84e-26

methyl-accepting chemotaxis protein IV;


Pssm-ID: 182079 [Multi-domain]  Cd Length: 533  Bit Score: 113.24  E-value: 1.84e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 309 SELDATAHSMSAMAQQTstqatvvASAAEQTSANVQTVATATEEMASSIREIGSQISRSADIAGKAVNEATQTSNAVRSL 388
Cdd:PRK09793 278 AEIVAGNNDLSSRTEQQ-------AASLAQTAASMEQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEI 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 389 AEAAQKIGEVVGLITDIASQTNLLALNATIEAARAGEAGKGFAVVASEVKSLAGQTAKATEEIASQI----GAIQQTTQG 464
Cdd:PRK09793 351 ATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLIeesvNRVQQGSKL 430

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 933521418 465 VVTA---ITGIGSTISSINDITTGIAAAIEEQSAATTEISRNVQQAAAGTQE 513
Cdd:PRK09793 431 VNNAaatMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQ 482
PRK15041 PRK15041
methyl-accepting chemotaxis protein;
189-556 3.38e-25

methyl-accepting chemotaxis protein;


Pssm-ID: 185001 [Multi-domain]  Cd Length: 554  Bit Score: 109.66  E-value: 3.38e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 189 SSKLWVAAILGLIVTVGIGAAWM-IVATVLRPIEAITAVMGRLANRDMAVSIDgISRGDELGAMARAVQVFKDGLIeadr 267
Cdd:PRK15041 190 SQAMWILVGVMIVVLAVIFAVWFgIKASLVAPMNRLIDSIRHIAGGDLVKPIE-VDGSNEMGQLAESLRHMQGELM---- 264

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 268 laraeaaeqqakarRTEVIERllagfetssgTALRTVAAAASELDATAHSMSAMAQQTSTQATVVASAAEQTSANVQTVA 347
Cdd:PRK15041 265 --------------RTVGDVR----------NGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNA 320

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 348 tateEMASSIREIGSQISRSADIAGKAVNEATQTsnaVRSLAEAAQKIGEVVGLITDIASQTNLLALNATIEAARAGEAG 427
Cdd:PRK15041 321 ----ENARQASHLALSASETAQRGGKVVDNVVQT---MRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQG 393

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 428 KGFAVVASEVKSLAGQTAKATEEIASQIGAIQQTTQGVVTAITGIGSTISSINDITTGIAAAIEEQSAATTEISRNVQQA 507
Cdd:PRK15041 394 RGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQV 473

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 933521418 508 AAGTQEVTgsilQVTQAAGEAGNAAGQvldAAGELSQQAERMRHDVETF 556
Cdd:PRK15041 474 GLAVAEMD----RVTQQNAALVEESAA---AAAALEEQASRLTEAVAVF 515
PRK15048 PRK15048
methyl-accepting chemotaxis protein II; Provisional
 193-556 1.21e-24

methyl-accepting chemotaxis protein II; Provisional


Pssm-ID: 185008 [Multi-domain]  Cd Length: 553  Bit Score: 107.78  E-value: 1.21e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 193 WVAAILGLIVTVGIGAAWM-IVATVLRPIEAITAVMGRLANRDMAVSIDgISRGDELGAMARAVQVFKDGLIEAdrlara 271
Cdd:PRK15048 192 WQLAVIALVVVLILLVAWYgIRRMLLTPLAKIIAHIREIAGGNLANTLT-IDGRSEMGDLAQSVSHMQRSLTDT------ 264

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 272 eaaeqqakarRTEVIERLLAgfetssgtalrtVAAAASELDATAHSMSAMAQQTstqatvvASAAEQTSANVQTVATATE 351
Cdd:PRK15048 265 ----------VTHVREGSDA------------IYAGTREIAAGNTDLSSRTEQQ-------ASALEETAASMEQLTATVK 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 352 EMASSIREIGSQISRSADIA---GKAVNEATQTsnaVRSLAEAAQKIGEVVGLITDIASQTNLLALNATIEAARAGEAGK 428
Cdd:PRK15048 316 QNADNARQASQLAQSASDTAqhgGKVVDGVVKT---MHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGR 392

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 429 GFAVVASEVKSLAGQTAKATEEIASQI-GAIQQTTQGVVTaITGIGSTISSINDITTGIAAAIEEQSAATTEISRNVQQA 507
Cdd:PRK15048 393 GFAVVAGEVRNLASRSAQAAKEIKALIeDSVSRVDTGSVL-VESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQV 471

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 933521418 508 AAGTQEVTgsilQVTQAAGEAGNAAGQvldAAGELSQQAERMRHDVETF 556
Cdd:PRK15048 472 ALAVSEMD----RVTQQNASLVQESAA---AAAALEEQASRLTQAVSAF 513
4HB_MCP_1 pfam12729
Four helix bundle sensory module for signal transduction; This family is a four helix bundle ...
 6-187 4.57e-18

Four helix bundle sensory module for signal transduction; This family is a four helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterized in E coli chemoreceptors. This domain recognizes citrate and TCA cycle intermediates, cis-aconitate, boric acid, Phenanthrene, pyrene and benzopyrene (Matilla et el., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 432749 [Multi-domain]  Cd Length: 181  Bit Score: 82.30  E-value: 4.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418    6 NITVKSRTFAAILTILVCTVGLGLFSLSKLSAINTEAEDVRDNWLPSIVAISRLYTTFDFYRTVEGGHLIASTDADMARE 85
Cdd:pfam12729   1 NLKIRTKLILLFLLLALLLIIVGVVGLYSLKQINDNLDTMYEDRLLPIKWLGDIRANLLELRANLLELILTTDPAERDEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418   86 EQALSEIANRIETRRIDYEKLLVPGWETETYRKFMTSYQNYMKIsREQLLPLSRNNDNAAAGALFRGASRDEFRISKDLL 165
Cdd:pfam12729  81 LKDIEELRAEIDKLLEKYEKTILTDEEKKLFAEFKENLNAYRAV-RNKVLELAKAGNKDEAYQLYKTEGRPAREAMIEAL 159

                         170       180
                  ....*....|....*....|..
gi 933521418  166 QSLVDFNATEGKRSADHGEEVY 187
Cdd:pfam12729 160 EELVDYNLKVAKEAYKDNKASY 181
HAMP COG2770
HAMP domain [Signal transduction mechanisms];
27-563 1.53e-06

HAMP domain [Signal transduction mechanisms];


Pssm-ID: 442051 [Multi-domain]  Cd Length: 631  Bit Score: 51.27  E-value: 1.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418  27 LGLFSLSKLSAINTEAEDVRDNWLPSIVAISRLYTTFDFYRTVEGGHLIASTDADMAREEQALSEIANRIETRRIDYEKL 106
Cdd:COG2770   47 LALLLLLLLLLLLLLAALVLLALLLAAALLLLLLLLSLVALAALLLALLLLLLLALLLLLAALLLLLLLAALALLLLLLL 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 107 LVPGWETETYRKFMTSYQNYMKISREQLLPLSRNNDNAAAGALFRGASRDEFRISKDLLQSLVDFNATEGKRSADHGEEV 186
Cdd:COG2770  127 LLAALLALLLALALLALLLGLAAARLLLAALLALAAALALALGAGELLLLADLAAAIAALLAALLLLLLGGLLLVVLLEA 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 187 YQSSKLWVAAILGLIVTVGIGAAWMIVATVLRPIEAITAVMGRLANRDMAVSIDgISRGDELGAMARAVQVFKDGLIEAD 266
Cdd:COG2770  207 ALAALLLLLLLALLALLLALLLALLLARRITRPLRRLAEAARRIAAGDLDVRIP-VSRKDEIGELARAFNRMADSLRESI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 267 RLARAEAAEQQAKARRTEVIERLLAGFETSSGTALRTVAAAASELDATAHSMSAMAQQTSTQATVVASAAEQTSAnVQTV 346
Cdd:COG2770  286 EEAEEEEELAEAELARLLEALLELLLALLLLLLALLLLAAAALLLELLLLLLLALLLLLLLAADLLLALALAALL-LLLA 364

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 347 ATATEEMASSIREIGSQISRSADIAGKAVNEATQTSNAVRSLAEAAQKIGEVVGLITDIASQTNLLALNATIEAARAGEA 426
Cdd:COG2770  365 LELLLEAELLVLLALEALALEAELAAVLALLAALAAALLLLELALEELVLALLALALLALAAAAAAAEAAAAALELAAAA 444

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 427 GKGFAVVASEVKSLAGQTAKATEEIASQIGAIQQTTQGVVTAITGIGSTISSINDITTGIAAAIEEQSAATTEISRNVQQ 506
Cdd:COG2770  445 IAAAAAAEAEGGLAELEAEELVAAAEALLLLAALLLLAALGALELLLLEEEEEAGAAAEELAEELLLLEGLLLLLLLEAE 524

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 933521418 507 AAAGTQEVTGSILQVTQAAGEAGNAAGQVLDAAGELSQQAERMRHDVETFLSNIKAA 563
Cdd:COG2770  525 ALEVAEELLELEEAALLLAAAAELAALLALLLALAAVEAAALLLAALLLAAVAALLE 581
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
249-563 4.52e-05

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 46.17  E-value: 4.52e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 249 GAMARAVQVFKDGLIEADRLARAEAAEQQAKARRTEVIERLLAGFETSSGTALRTVAAAASELDATAHSMSAMAQQTSTQ 328
Cdd:COG0840   14 LLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVLLALLLALLLLLL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 329 ATVVASAAEQTSANVQTVATATEEMASSIREIGSQISRSADIAGKAVNEATQTSNAVRSLAEAAQKIGEVVGLITDIASQ 408
Cdd:COG0840   94 ALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAAAALAALLEAAALA 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 409 TNLLALNATIEAARAGEAGKGFAVVASEVKSLAGQTAKATEEIASQIG---------------------AIQQTTQGVVT 467
Cdd:COG0840  174 LAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAegdltvridvdskdeigqladAFNRMIENLRE 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 468 AITGIGSTISSINDITTGIAAAIEEQSAATTEISRNVQQAAAGTQEVTGSILQVTQAAGEAGNAAGQVLDAAGELSQQAE 547
Cdd:COG0840  254 LVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGGEVVE 333

                        330
                 ....*....|....*.
gi 933521418 548 RMRHDVETFLSNIKAA 563
Cdd:COG0840  334 EAVEGIEEIRESVEET 349
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
197-562 4.03e-04

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 43.09  E-value: 4.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 197 ILGLIVTVGIGAAWMIVATVLRPIEAITAVMGRLANRDMAVSIDGISRGDELGAMARAVQVFKDGLIEADRLARAEAAEQ 276
Cdd:COG0840    1 LLILLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 277 QAKARRTEVIERLLAGFETSSGTALRTVAAAASELDATAHSMSAMAQQTSTQATVVASAAEQTSANVQTVATATEEMASS 356
Cdd:COG0840   81 LLALLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 357 IREIGSqisrsADIAGKAVNEATQTSNAVRSLAEAAQKIGEVVGLITDIASQTNLLALNATIEAARAGEAGKGFAVVAS- 435
Cdd:COG0840  161 AALAAL-----LEAAALALAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRIDVDSKd 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 436 EVKSLAGQTAKATEEIASQIGAIQQTTQGVVTAItgigstiSSINDITTGIAAAIEEQSAATTEISRNVQQAAAGTQEVT 515
Cdd:COG0840  236 EIGQLADAFNRMIENLRELVGQVRESAEQVASAS-------EELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVA 308

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 933521418 516 GSILQVTQAAGEAGNAAGQVLDAAGELSQQAERMRHDVETFLSNIKA 562
Cdd:COG0840  309 ENAQQAAELAEEASELAEEGGEVVEEAVEGIEEIRESVEETAETIEE 355
HAMP smart00304
HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain;
215-267 5.14e-04

HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain;


Pssm-ID: 197640 [Multi-domain]  Cd Length: 53  Bit Score: 38.00  E-value: 5.14e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 933521418   215 TVLRPIEAITAVMGRLANRDMAVSIDgISRGDELGAMARAVQVFKDGLIEADR 267
Cdd:smart00304   2 RLLRPLRRLAEAAQRIADGDLTVRLP-VDGRDEIGELARAFNEMADRLEETIA 53
PHA03332 PHA03332
membrane glycoprotein; Provisional
 294-488 6.92e-04

membrane glycoprotein; Provisional


Pssm-ID: 223047 [Multi-domain]  Cd Length: 1328  Bit Score: 42.65  E-value: 6.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418  294 ETSSGTALRTVAAAASELDATAHSMSA--MAQQTSTQATVVASAAEQTSANVQTVATATEEMASSIREIGSQISRSADIA 371
Cdd:PHA03332  835 ETVKMFAPRRFGGSVMAGDAIGLSAAAftMASAALNAATQALAVATLYVNQLLQATAATAEMASKIGGLNARVDKTSDVI 914

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418  372 GKAVNEATQTSNAVRSlaeaaqKIGEVVGLITDIASQTNLlalnatieaarageagkGFAVVASEVKSLAGQTAKATEEI 451
Cdd:PHA03332  915 TKLGDTIAKISATLDN------NIRAVNGRVSDLEDQVNL-----------------RFLAVATNFNTLATQLKELGTTT 971

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 933521418  452 ASQIGA----------IQQTTQGVVTAITGIGSTISSINDITTGIAA 488
Cdd:PHA03332  972 NERIEEvmaaalyyqqLNSLTNQVTQSASKLGYQVGMYRTCLKSLLA 1018
HAMP cd06225
Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain; ...
 217-262 1.53e-03

Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain; HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The structure of the Af1503 HAMP dimer from Archaeoglobus fulgidus has been solved using nuclear magnetic resonance, revealing a parallel four-helix bundle; this structure has been confirmed by cross-linking analysis of HAMP domains from the Escherichia coli aerotaxis receptor Aer. It has been suggested that the four-helix arrangement can rotate between the unusually packed conformation observed in the NMR structure and a canonical coiled-coil arrangement. Such rotation may coincide with signal transduction, but a common mechanism by which HAMP domains relay a variety of input signals has yet to be established.


Pssm-ID: 381743 [Multi-domain]  Cd Length: 45  Bit Score: 36.65  E-value: 1.53e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 933521418 217 LRPIEAITAVMGRLANRDMAVSIDgISRGDELGAMARAVQVFKDGL 262
Cdd:cd06225    1 TRPLRRLTEAARRIAEGDLDVRVP-VRSKDEIGELARAFNQMAERL 45
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 302-400 3.00e-03

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 39.58  E-value: 3.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418   302 RTVAAAASELDATAHSMSAMAQQTSTQATVVASAAEQTSANVQTVATATEEMASSIREIGSQISRSADIAGKAVNEATQT 381
Cdd:smart00283 161 NEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEI 240

                           90
                   ....*....|....*....
gi 933521418   382 SNAVRSLAEAAQKIGEVVG 400
Cdd:smart00283 241 SAAAEELSGLAEELDELVE 259
COG4192 COG4192
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ...
 192-267 4.17e-03

Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];


Pssm-ID: 443346 [Multi-domain]  Cd Length: 640  Bit Score: 40.05  E-value: 4.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 933521418 192 LWVAAILGLIVTVGIgaAW-----MIVATVLRPIEAitavMGRLANRDMAVSIdGISRGDELGAMARAVQVFKDGLIEAD 266
Cdd:COG4192  328 LLAIALLSLLLAVLI--NYfyvrrRLVKRLNALSDA----MAAIAAGDLDVPI-PVDGNDEIGRIARLLRVFRDQAIEKT 400


                 .
gi 933521418 267 R 267
Cdd:COG4192  401 Q 401
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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