|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
163-500 |
1.65e-153 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 444.98 E-value: 1.65e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 163 LMQKVMDEnvRLHKEIKAKYEFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAI 242
Cdd:COG3829 118 LERKLREE--ELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAV 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 243 NCGALPETLLEAELFGSVRGAFTGAV--DKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDV 320
Cdd:COG3829 196 NCAAIPENLLESELFGYEKGAFTGAKkgGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDV 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 321 RLICATNEDLREAIQKGSFRQDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKALDALMRYDWt 400
Cdd:COG3829 276 RIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDW- 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 401 ENNVRELENEIERAVIYAkTGSTINLNDLSEKVRGAlptaicsAPRAQDAKGKPL--TYDELEREYINTILLQVAGNQTE 478
Cdd:COG3829 355 PGNVRELENVIERAVVLS-EGDVITPEHLPEYLLEE-------AEAASAAEEGSLkeALEEVEKELIEEALEKTGGNKSK 426
|
330 340
....*....|....*....|..
gi 931484037 479 AAKIMGIPRTTLRGKMKKLGLT 500
Cdd:COG3829 427 AAKALGISRSTLYRKLKKYGIK 448
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
7-487 |
3.10e-123 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 370.58 E-value: 3.10e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 7 RLIALFEINHKIHRIKNLQILLDEILDSAIRNIRAERGFIILADETGENYRTVA----SKSLKSEDIRFSRSIVKETLKR 82
Cdd:TIGR01817 3 QLAALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAigwsEEGFAPIRYRVGEGAIGQIVAT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 83 KKTLLSPDIGADAGFKDRDSVRELNILSFICVPLIVpeATRALGTLYVDQRIGKKAFTQEDVAFLEAFTNLAAIAI--NN 160
Cdd:TIGR01817 83 GNSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIKA--DSETIGVLAADRDFRSRERLEEEVRFLEMVANLIGQTVrlHR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 161 TTLM--QKVMDENVRLHKEIKAK---------YEFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIH 229
Cdd:TIGR01817 161 LVAQrrERLIAEAVQLSKQLRDKapeiarrrsGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 230 YNGERRTKPFLAINCGALPETLLEAELFGSVRGAFTGAV-DKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIR 308
Cdd:TIGR01817 241 YLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIaQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 309 RVGGTTSHKVDVRLICATNEDLREAIQKGSFRQDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQgFDK 388
Cdd:TIGR01817 321 RVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLT-ITP 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 389 KALDALMRYDWTeNNVRELENEIERAVIYAKTGsTINLNDLS--------------------EKVRGALPTAICSAPRAQ 448
Cdd:TIGR01817 400 SAIRVLMSCKWP-GNVRELENCLERTATLSRSG-TITRSDFScqsgqclspmlaktcphghiSIDPLAGTTPPHSPASAA 477
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 931484037 449 DAKGKPLTYDEL-EREYINTILLQVAGNQTEAAKIMGI-PR 487
Cdd:TIGR01817 478 LPGEPGLSGPTLsERERLIAALEQAGWVQAKAARLLGMtPR 518
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
128-499 |
2.01e-102 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 316.34 E-value: 2.01e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 128 LYVDQR-IG--------KKAFTQEDVAFLEAFTNLAAIAINNTTLMQK-------------VMDENVRLHKEIkakyefp 185
Cdd:PRK05022 117 LFVDGRlIGaltldaldPGQFDAFSDEELRALAALAAATLRNALLIEQlesqaelpqdvaeFLRQEALKEGEM------- 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 186 gvVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRGAFT 265
Cdd:PRK05022 190 --IGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFT 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 266 GAV-DKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQDFY 344
Cdd:PRK05022 268 GAIsNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLY 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 345 YRINVVTINVPPLRDRREDIPILAQHFLEKhaTEKRKSFQG--FDKKALDALMRYDWTeNNVRELENEIERAVIYAKTGS 422
Cdd:PRK05022 348 HRLSVFPLSVPPLRERGDDVLLLAGYFLEQ--NRARLGLRSlrLSPAAQAALLAYDWP-GNVRELEHVISRAALLARARG 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 423 -----TINLNDLSEKVRGALPTAIcSAPRAQDAKGKPL--TYDELEREYINTILLQVAGNQTEAAKIMGIPRTTLRGKMK 495
Cdd:PRK05022 425 agrivTLEAQHLDLPAEVALPPPE-AAAAPAAVVSQNLreATEAFQRQLIRQALAQHQGNWAAAARALELDRANLHRLAK 503
|
....
gi 931484037 496 KLGL 499
Cdd:PRK05022 504 RLGL 507
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
187-352 |
1.35e-96 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 288.92 E-value: 1.35e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 187 VVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRGAFTG 266
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 267 AV-DKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQDFYY 345
Cdd:pfam00158 81 ADsDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 931484037 346 RINVVTI 352
Cdd:pfam00158 161 RLNVIPI 167
|
|
| PtsP |
COG3605 |
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]; |
6-183 |
1.00e-22 |
|
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms];
Pssm-ID: 442824 [Multi-domain] Cd Length: 188 Bit Score: 95.35 E-value: 1.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 6 ERLIALFEINHKIHRIKNLQILLDEILDSAIRNIRAERGFIILADETGENYRTVASKSLKSED-----IRFSRSIVKETL 80
Cdd:COG3605 1 EMLKALRRISEAVASALDLDEALDRIVRRIAEALGVDVCSIYLLDPDGGRLELRATEGLNPEAvgkvrLPLGEGLVGLVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 81 KRKKTLLSPDIGADAGFKDRDSVRELNILSFICVPLIVPEatRALGTLYVDQRiGKKAFTQEDVAFLEAFTNLAAIAINN 160
Cdd:COG3605 81 ERGEPLNLADAASHPRFKYFPETGEEGFRSFLGVPIIRRG--RVLGVLVVQSR-EPREFTEEEVEFLVTLAAQLAEAIAN 157
|
170 180
....*....|....*....|...
gi 931484037 161 TTLMQKVMDENVRLHKEIKAKYE 183
Cdd:COG3605 158 AELLGELRAALAELSLAREEERE 180
|
|
| GAF |
smart00065 |
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ... |
23-167 |
1.12e-20 |
|
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Pssm-ID: 214500 [Multi-domain] Cd Length: 149 Bit Score: 88.21 E-value: 1.12e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 23 NLQILLDEILDSAIRNIRAERGFIILADETGEN-----YRTVASKSLKSEDIRFSRSIVKETLKRKKTLLSPDIGADAGF 97
Cdd:smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDENDRGelvlvAADGLTLPTLGIRFPLDEGLAGRVAETGRPLNIPDVEADPLF 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 98 KDRDSVRELNILSFICVPLIVPEatRALGTLYVDQRIGKKAFTQEDVAFLEAFTNLAAIAINNTTLMQKV 167
Cdd:smart00065 81 AEDLLGRYQGVRSFLAVPLVADG--ELVGVLALHNKKSPRPFTEEDEELLQALANQLAIALANAQLYEEL 148
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
211-356 |
3.14e-20 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 87.20 E-value: 3.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 211 VLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGsvrgaFTGAVDKPGLFQAAHGGTLFLDEIHHT 290
Cdd:cd00009 22 LLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG-----HFLVRLLFELAEKAKPGVLFIDEIDSL 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 931484037 291 SEAMQIKLLRVLQDKDIRRVGgttshKVDVRLICATNEDLReaiqkGSFRQDFYYRINVVtINVPP 356
Cdd:cd00009 97 SRGAQNALLRVLETLNDLRID-----RENVRVIGATNRPLL-----GDLDRALYDRLDIR-IVIPL 151
|
|
| GAF |
pfam01590 |
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl ... |
23-158 |
2.10e-17 |
|
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54. This domain can bind biliverdine and phycocyanobilin (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 460259 [Multi-domain] Cd Length: 133 Bit Score: 78.67 E-value: 2.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 23 NLQILLDEILDSAIRNIRAERGFIILADETGENYRTVASKSLKSEDIRFSRSIVKETLKRKKTLLSPDIGADAGFKD-RD 101
Cdd:pfam01590 1 DLEEILQTILEELRELLGADRCALYLPDADGLEYLPPGARWLKAAGLEIPPGTGVTVLRTGRPLVVPDAAGDPRFLDpLL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 931484037 102 SVRELNILSFICVPLIVPEatRALGTLYVDQRigKKAFTQEDVAFLEAFTNLAAIAI 158
Cdd:pfam01590 81 LLRNFGIRSLLAVPIIDDG--ELLGVLVLHHP--RPPFTEEELELLEVLADQVAIAL 133
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
210-346 |
2.30e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.92 E-value: 2.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 210 TVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEA---ELFGSVRGAFTGAVDKPGLFQAAHG---GTLF 283
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLRLALALARKlkpDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 931484037 284 LDEIHHTSEAMQIKLLRVLQDkdiRRVGGTTSHKVDVRLICATN--EDLREAIQKGSFRQDFYYR 346
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLL 145
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
163-500 |
1.65e-153 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 444.98 E-value: 1.65e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 163 LMQKVMDEnvRLHKEIKAKYEFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAI 242
Cdd:COG3829 118 LERKLREE--ELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAV 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 243 NCGALPETLLEAELFGSVRGAFTGAV--DKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDV 320
Cdd:COG3829 196 NCAAIPENLLESELFGYEKGAFTGAKkgGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDV 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 321 RLICATNEDLREAIQKGSFRQDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKALDALMRYDWt 400
Cdd:COG3829 276 RIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDW- 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 401 ENNVRELENEIERAVIYAkTGSTINLNDLSEKVRGAlptaicsAPRAQDAKGKPL--TYDELEREYINTILLQVAGNQTE 478
Cdd:COG3829 355 PGNVRELENVIERAVVLS-EGDVITPEHLPEYLLEE-------AEAASAAEEGSLkeALEEVEKELIEEALEKTGGNKSK 426
|
330 340
....*....|....*....|..
gi 931484037 479 AAKIMGIPRTTLRGKMKKLGLT 500
Cdd:COG3829 427 AAKALGISRSTLYRKLKKYGIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
170-498 |
1.80e-134 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 395.49 E-value: 1.80e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 170 ENVRLHKEIKAKyefPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPE 249
Cdd:COG2204 119 ERRRLRRENAED---SGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPE 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 250 TLLEAELFGSVRGAFTGAV-DKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNE 328
Cdd:COG2204 196 ELLESELFGHEKGAFTGAVaRRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNR 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 329 DLREAIQKGSFRQDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQgFDKKALDALMRYDWTeNNVRELE 408
Cdd:COG2204 276 DLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK-LSPEALEALLAYDWP-GNVRELE 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 409 NEIERAVIYAkTGSTINLNDLsekvrgalptaicsapraqdakgkPLTYDELEREYINTILLQVAGNQTEAAKIMGIPRT 488
Cdd:COG2204 354 NVIERAVILA-DGEVITAEDL------------------------PEALEEVERELIERALEETGGNVSRAAELLGISRR 408
|
330
....*....|
gi 931484037 489 TLRGKMKKLG 498
Cdd:COG2204 409 TLYRKLKKYG 418
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
7-487 |
3.10e-123 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 370.58 E-value: 3.10e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 7 RLIALFEINHKIHRIKNLQILLDEILDSAIRNIRAERGFIILADETGENYRTVA----SKSLKSEDIRFSRSIVKETLKR 82
Cdd:TIGR01817 3 QLAALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAigwsEEGFAPIRYRVGEGAIGQIVAT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 83 KKTLLSPDIGADAGFKDRDSVRELNILSFICVPLIVpeATRALGTLYVDQRIGKKAFTQEDVAFLEAFTNLAAIAI--NN 160
Cdd:TIGR01817 83 GNSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIKA--DSETIGVLAADRDFRSRERLEEEVRFLEMVANLIGQTVrlHR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 161 TTLM--QKVMDENVRLHKEIKAK---------YEFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIH 229
Cdd:TIGR01817 161 LVAQrrERLIAEAVQLSKQLRDKapeiarrrsGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 230 YNGERRTKPFLAINCGALPETLLEAELFGSVRGAFTGAV-DKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIR 308
Cdd:TIGR01817 241 YLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIaQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 309 RVGGTTSHKVDVRLICATNEDLREAIQKGSFRQDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQgFDK 388
Cdd:TIGR01817 321 RVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLT-ITP 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 389 KALDALMRYDWTeNNVRELENEIERAVIYAKTGsTINLNDLS--------------------EKVRGALPTAICSAPRAQ 448
Cdd:TIGR01817 400 SAIRVLMSCKWP-GNVRELENCLERTATLSRSG-TITRSDFScqsgqclspmlaktcphghiSIDPLAGTTPPHSPASAA 477
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 931484037 449 DAKGKPLTYDEL-EREYINTILLQVAGNQTEAAKIMGI-PR 487
Cdd:TIGR01817 478 LPGEPGLSGPTLsERERLIAALEQAGWVQAKAARLLGMtPR 518
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
184-498 |
3.82e-113 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 347.66 E-value: 3.82e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 184 FPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRGA 263
Cdd:COG3284 320 LAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 264 FTGAVDK--PGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQ 341
Cdd:COG3284 400 FTGARRKgrPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFRE 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 342 DFYYRINVVTINVPPLRDrREDIPILAQHFLEKHAteKRKSFQGFDKKALDALMRYDWTeNNVRELENEIERAVIYAkTG 421
Cdd:COG3284 480 DLYYRLNGLTLTLPPLRE-REDLPALIEHLLRELA--AGRGPLRLSPEALALLAAYPWP-GNVRELRNVLRTALALA-DG 554
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 931484037 422 STINLNDLSEKVRGALPtaicSAPRAQDAKGKPLtyDELEREYINTILLQVAGNQTEAAKIMGIPRTTLRGKMKKLG 498
Cdd:COG3284 555 GVITVEDLPDELRAELA----AAAPAAAAPLTSL--EEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
128-499 |
2.01e-102 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 316.34 E-value: 2.01e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 128 LYVDQR-IG--------KKAFTQEDVAFLEAFTNLAAIAINNTTLMQK-------------VMDENVRLHKEIkakyefp 185
Cdd:PRK05022 117 LFVDGRlIGaltldaldPGQFDAFSDEELRALAALAAATLRNALLIEQlesqaelpqdvaeFLRQEALKEGEM------- 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 186 gvVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRGAFT 265
Cdd:PRK05022 190 --IGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFT 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 266 GAV-DKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQDFY 344
Cdd:PRK05022 268 GAIsNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLY 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 345 YRINVVTINVPPLRDRREDIPILAQHFLEKhaTEKRKSFQG--FDKKALDALMRYDWTeNNVRELENEIERAVIYAKTGS 422
Cdd:PRK05022 348 HRLSVFPLSVPPLRERGDDVLLLAGYFLEQ--NRARLGLRSlrLSPAAQAALLAYDWP-GNVRELEHVISRAALLARARG 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 423 -----TINLNDLSEKVRGALPTAIcSAPRAQDAKGKPL--TYDELEREYINTILLQVAGNQTEAAKIMGIPRTTLRGKMK 495
Cdd:PRK05022 425 agrivTLEAQHLDLPAEVALPPPE-AAAAPAAVVSQNLreATEAFQRQLIRQALAQHQGNWAAAARALELDRANLHRLAK 503
|
....
gi 931484037 496 KLGL 499
Cdd:PRK05022 504 RLGL 507
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
164-500 |
5.63e-102 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 313.32 E-value: 5.63e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 164 MQKVMDENVRLHKEIKAKYEFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAIN 243
Cdd:PRK11361 122 LQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVN 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 244 CGALPETLLEAELFGSVRGAFTGA-VDKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRL 322
Cdd:PRK11361 202 CAALPESLLESELFGHEKGAFTGAqTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRI 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 323 ICATNEDLREAIQKGSFRQDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKALDALMRYDWTeN 402
Cdd:PRK11361 282 IAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWP-G 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 403 NVRELENEIERAVIYAkTGSTINLNDLSEKVRGALPTAICSAPRAQDAKGKPLTYDELEREYINTILLQVAGNQTEAAKI 482
Cdd:PRK11361 361 NIRELSNVIERAVVMN-SGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALM 439
|
330
....*....|....*...
gi 931484037 483 MGIPRTTLRGKMKKLGLT 500
Cdd:PRK11361 440 LGISRRALMYKLQEYGID 457
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
152-499 |
2.74e-101 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 311.30 E-value: 2.74e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 152 NLAAIAINNTTLMQKVMDENVRLhKEIKAKYEFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYN 231
Cdd:TIGR02915 107 DVLKLIVDRAFHLYTLETENRRL-QSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 232 GERRTKPFLAINCGALPETLLEAELFGSVRGAFTGAVDK-PGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRV 310
Cdd:TIGR02915 186 SDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQtLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERL 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 311 GGTTSHKVDVRLICATNEDLREAIQKGSFRQDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKA 390
Cdd:TIGR02915 266 GGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDA 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 391 LDALMRYDWTeNNVRELENEIERAVIYAkTGSTINLNDLsekvrGALPTAICSAPRAQDAKgkpLTYDELEREYINTILL 470
Cdd:TIGR02915 346 LRALEAHAWP-GNVRELENKVKRAVIMA-EGNQITAEDL-----GLDARERAETPLEVNLR---EVRERAEREAVRKAIA 415
|
330 340
....*....|....*....|....*....
gi 931484037 471 QVAGNQTEAAKIMGIPRTTLRGKMKKLGL 499
Cdd:TIGR02915 416 RVDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
186-496 |
3.24e-101 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 311.19 E-value: 3.24e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 186 GVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRGAFT 265
Cdd:PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFT 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 266 GAvDK--PGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQDF 343
Cdd:PRK10365 220 GA-DKrrEGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 344 YYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKALDALMRYDWTeNNVRELENEIERAVIYAkTGST 423
Cdd:PRK10365 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP-GNIRELENAVERAVVLL-TGEY 376
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 931484037 424 InlndlSEKvrgALPTAICSA--PRAQDAKGKPLTydELEREYINTILLQVAGNQTEAAKIMGIPRTTLRGKMKK 496
Cdd:PRK10365 377 I-----SER---ELPLAIASTpiPLGQSQDIQPLV--EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
187-352 |
1.35e-96 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 288.92 E-value: 1.35e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 187 VVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRGAFTG 266
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 267 AV-DKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQDFYY 345
Cdd:pfam00158 81 ADsDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 931484037 346 RINVVTI 352
Cdd:pfam00158 161 RLNVIPI 167
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
90-500 |
1.06e-90 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 280.20 E-value: 1.06e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 90 DIGADAGFKDRDSVRELNILSFICVPLIVPEatRALGTLYVDqRIGKKAFTQEDVAFLEAFTNLAAIAInnttlmqkvmd 169
Cdd:COG3604 55 SEALLAAQARQAALAARERQLFLGVPLRVGG--EVLGVLTLD-SRRPGAFSEEDLRLLETLASLAAVAI----------- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 170 envrlhkeikakyefpgvvghsqpmqdvferiehvlddnctvllTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPE 249
Cdd:COG3604 121 --------------------------------------------LGETGTGKELVANAIHELSPRADKPFVKVNCAALPE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 250 TLLEAelfgsvrgaftgavdkpglfqaahggtlfldeihhtseamqikllrvLQDKDIRRVGGTTSHKVDVRLICATNED 329
Cdd:COG3604 157 SLLES-----------------------------------------------LQEGEFERVGGDETIKVDVRIIAATNRD 189
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 330 LREAIQKGSFRQDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKALDALMRYDWTEnNVRELEN 409
Cdd:COG3604 190 LEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPG-NVRELEN 268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 410 EIERAVIYAkTGSTINLNDLSEKVRGALptaicsapraqdakgkpltyDELEREYINTILLQVAGNQTEAAKIMGIPRTT 489
Cdd:COG3604 269 VIERAVILA-EGGVLDADDLAPGSREAL--------------------EEVEREHILEALERTGGNIAGAARLLGLTPST 327
|
410
....*....|.
gi 931484037 490 LRGKMKKLGLT 500
Cdd:COG3604 328 LRSRMKKLGIK 338
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
182-497 |
2.12e-90 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 283.94 E-value: 2.12e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 182 YEFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVR 261
Cdd:TIGR01818 131 EDSAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEK 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 262 GAFTGAVD-KPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFR 340
Cdd:TIGR01818 211 GAFTGANTrRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFR 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 341 QDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKALDALMRYDWTeNNVRELENEIER-AVIYak 419
Cdd:TIGR01818 291 EDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWP-GNVRQLENLCRWlTVMA-- 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 420 TGSTINLNDLSEKVRGALPTAICSAPRAQD--------------AKGKPLTYD----ELEREYINTILLQVAGNQTEAAK 481
Cdd:TIGR01818 368 SGDEVLVSDLPAELALTGRPASAPDSDGQDswdealeawakqalSRGEQGLLDralpEFERPLLEAALQHTRGHKQEAAA 447
|
330
....*....|....*.
gi 931484037 482 IMGIPRTTLRGKMKKL 497
Cdd:TIGR01818 448 LLGWGRNTLTRKLKEL 463
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
183-415 |
9.65e-89 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 280.92 E-value: 9.65e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 183 EFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRG 262
Cdd:COG3283 202 GFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPG 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 263 AFTGA-VDKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQ 341
Cdd:COG3283 282 AFGNArEGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFRE 361
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 931484037 342 DFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKALDALMRYDWTeNNVRELENEIERAV 415
Cdd:COG3283 362 DLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWP-GNVRQLENALYRAV 434
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
187-488 |
1.57e-82 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 262.85 E-value: 1.57e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 187 VVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRGAFTG 266
Cdd:PRK15115 136 IVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 267 AV-DKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQDFYY 345
Cdd:PRK15115 216 AVsNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 346 RINVVTINVPPLRDRREDIPILAQHFLeKHATEKRKSF-QGFDKKALDALMRYDWTeNNVRELENEIERAViyAKTGSTI 424
Cdd:PRK15115 296 RLNVVSLKIPALAERTEDIPLLANHLL-RQAAERHKPFvRAFSTDAMKRLMTASWP-GNVRQLVNVIEQCV--ALTSSPV 371
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 931484037 425 NLNDLSEKVRGALPTAIcsaPRAQDAKGkpltydELEREYINTILLQVAGNQTEAAKIMGIPRT 488
Cdd:PRK15115 372 ISDALVEQALEGENTAL---PTFVEARN------QFELNYLRKLLQITKGNVTHAARMAGRNRT 426
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
177-496 |
1.77e-80 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 259.79 E-value: 1.77e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 177 EIKAKYEFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAEL 256
Cdd:TIGR02329 204 QLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 257 FGSVRGAFTGAVD--KPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAI 334
Cdd:TIGR02329 284 FGYEEGAFTGARRggRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAV 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 335 QKGSFRQDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKAL----DALMRYDWTeNNVRELENE 410
Cdd:TIGR02329 364 QQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLagvaDPLQRYPWP-GNVRELRNL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 411 IERAVIYAKTGSTinlNDLSEKVRGALptaicsAPRAQDAKGKPLT-------YDELEREYINTILLQVAGNQTEAAKIM 483
Cdd:TIGR02329 443 VERLALELSAMPA---GALTPDVLRAL------APELAEASGKGKTsalslreRSRVEALAVRAALERFGGDRDAAAKAL 513
|
330
....*....|...
gi 931484037 484 GIPRTTLRGKMKK 496
Cdd:TIGR02329 514 GISRTTLWRRLKA 526
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
179-496 |
8.72e-79 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 255.80 E-value: 8.72e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 179 KAKYEFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIH--------YNGERRTKPFLAINCGALPET 250
Cdd:PRK15424 213 RTRYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAES 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 251 LLEAELFGSVRGAFTGAV--DKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNE 328
Cdd:PRK15424 293 LLEAELFGYEEGAFTGSRrgGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHC 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 329 DLREAIQKGSFRQDFYYRINVVTINVPPLRDRREDIPILAQHFLekhatekRKSFQGFD-----------KKALDALMRY 397
Cdd:PRK15424 373 DLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFL-------KQSLAALSapfsaalrqglQQCETLLLHY 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 398 DWTeNNVRELENEIERAVIYAKTGSTINLNdlSEKVRGALPTaicsapRAQDAKGKPLTYDELEReyINTILLQVAGNQT 477
Cdd:PRK15424 446 DWP-GNVRELRNLMERLALFLSVEPTPDLT--PQFLQLLLPE------LARESAKTPAPRLLAAT--LQQALERFNGDKT 514
|
330
....*....|....*....
gi 931484037 478 EAAKIMGIPRTTLRGKMKK 496
Cdd:PRK15424 515 AAANYLGISRTTLWRRLKA 533
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
125-501 |
1.10e-75 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 251.29 E-value: 1.10e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 125 LGTLYVDQrIGKKAFTQEDVAFLEAFTNLAAIAINNT-------TLMQKVMDENVRLHKEIK-AKYEFPGVVGHSQPMQD 196
Cdd:PRK15429 309 LGVLKLAQ-CEEKVFTTTNLKLLRQIAERVAIAVDNAlayqeihRLKERLVDENLALTEQLNnVDSEFGEIIGRSEAMYS 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 197 VFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRGAFTGA-VDKPGLFQ 275
Cdd:PRK15429 388 VLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGAsAQRIGRFE 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 276 AAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQDFYYRINVVTINVP 355
Cdd:PRK15429 468 LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLP 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 356 PLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKALDALMRYDWtENNVRELENEIERAVIYAKtGSTINLndlsekvrg 435
Cdd:PRK15429 548 PLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEW-PGNVRELENVIERAVLLTR-GNVLQL--------- 616
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 931484037 436 ALP-TAICSAPRAQDAKGKPLTyDELEREYINTILLQ----VAGNQTeAAKIMGIPRTTLRGKMKKLGLTK 501
Cdd:PRK15429 617 SLPdITLPEPETPPAATVVAQE-GEDEYQLIVRVLKEtngvVAGPKG-AAQRLGLKRTTLLSRMKRLGIDK 685
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
187-499 |
1.28e-75 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 245.55 E-value: 1.28e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 187 VVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRGAFTG 266
Cdd:PRK10923 140 IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 267 AVD-KPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQDFYY 345
Cdd:PRK10923 220 ANTiRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 346 RINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKALDALMRYDWTeNNVRELENeIERAVIYAKTGSTIN 425
Cdd:PRK10923 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP-GNVRQLEN-TCRWLTVMAAGQEVL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 426 LNDLSEKVRGALPTAICS--------------APRAQDAKGKPLTYD---ELEREYINTILLQVAGNQTEAAKIMGIPRT 488
Cdd:PRK10923 378 IQDLPGELFESTVPESTSqmqpdswatllaqwADRALRSGHQNLLSEaqpELERTLLTTALRHTQGHKQEAARLLGWGRN 457
|
330
....*....|.
gi 931484037 489 TLRGKMKKLGL 499
Cdd:PRK10923 458 TLTRKLKELGM 468
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
183-414 |
6.75e-70 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 231.88 E-value: 6.75e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 183 EFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRG 262
Cdd:PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPG 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 263 AFTGAVD-KPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQ 341
Cdd:PRK10820 282 AYPNALEgKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFRE 361
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 931484037 342 DFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEkrksfQGFDKKALDA-----LMRYDWTeNNVRELENEIERA 414
Cdd:PRK10820 362 DLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADE-----QGVPRPKLAAdlntvLTRYGWP-GNVRQLKNAIYRA 433
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
196-496 |
1.55e-68 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 222.62 E-value: 1.55e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 196 DVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGSVRGAFTGAVDK-PGLF 274
Cdd:PRK11608 17 EVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRhPGRF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 275 QAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQDFYYRINVVTINV 354
Cdd:PRK11608 97 ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 355 PPLRDRREDIPILAQHFLEKHATE-KRKSFQGFDKKALDALMRYDWTeNNVRELENEIERAViYAKTGS-----TINLND 428
Cdd:PRK11608 177 PPLRERQSDIMLMAEHFAIQMCRElGLPLFPGFTERARETLLNYRWP-GNIRELKNVVERSV-YRHGTSeypldNIIIDP 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 931484037 429 LsekvrgALPTAICSAPRAQDAKGKPLTYD------ELEREYINTILLQVAGNQTEAAKIMGIPRTTLRGKMKK 496
Cdd:PRK11608 255 F------KRRPAEEAIAVSETTSLPTLPLDlrewqhQQEKELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKK 322
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
179-499 |
3.41e-68 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 230.34 E-value: 3.41e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 179 KAKYEFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFG 258
Cdd:PRK11388 319 KVSHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 259 SVRGAftGAVDKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGS 338
Cdd:PRK11388 399 SDRTD--SENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNR 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 339 FRQDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQgFDKKALDALMRYDWTENNvRELENEIERAVIYA 418
Cdd:PRK11388 477 FSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSYRWPGND-FELRSVIENLALSS 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 419 KtGSTINLNDLSEKVRGALPTAICSAPRAQDAkgkpLTYDELEREYINTILLQVAGNQTEAAKIMGIPRTTLRGKMKKLG 498
Cdd:PRK11388 555 D-NGRIRLSDLPEHLFTEQATDDVSATRLSTS----LSLAELEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHG 629
|
.
gi 931484037 499 L 499
Cdd:PRK11388 630 I 630
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
199-413 |
2.50e-34 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 135.35 E-value: 2.50e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 199 ERIEHV-LDDNCTVLLTGESGSGKEVLAKAIHYNGERR---TKPFLAINC------GALpetlleAELFGSVRGAFTGAV 268
Cdd:COG4650 198 EQIERVaIRSRAPILLTGPTGAGKSQLARRIYELKKARhqvSGRFVEVNCatlrgdGAM------SALFGHVKGAFTGAV 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 269 -DKPGLFQAAHGGTLFLDEIhhtSE------AMqikLLRVLQDKDIRRVGGTTSHKVDVRLICATNEDLREAIQKGSFRQ 341
Cdd:COG4650 272 sDRAGLLRSADGGVLFLDEI---GElgldeqAM---LLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFRE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 342 DFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEkrksfQG----FDKKALDALMRYD------WTeNNVRELENEI 411
Cdd:COG4650 346 DLLARINLWTFRLPGLAERREDIEPNLDYELARFARE-----QGrrvrFNKEARARYLAFAtspealWS-GNFRDLNASV 419
|
..
gi 931484037 412 ER 413
Cdd:COG4650 420 TR 421
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
211-439 |
5.01e-32 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 130.61 E-value: 5.01e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 211 VLLTGESGSGKEVLAKAIH----YNGER-RTKPFLAINCgAL----PEtLLEAELFGSVRGAFTGAV-DKPGLFQAAHGG 280
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYeyaiEIGVLpEDAPFVVFNC-ADyannPQ-LLMSQLFGYVKGAFTGADkDKEGLIEKADGG 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 281 TLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGT-TSHKVDVRLICATNEDLREaiqkgSFRQDFYYRINVVtINVPPLRD 359
Cdd:COG1221 211 ILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETeKTRKANVRIIFATTEDPES-----SLLKTFLRRIPMV-IKLPSLEE 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 360 R----REDipiLAQHFLEKHATEKRKSFQgFDKKALDALMRYDwTENNVRELENEIE----RAVIYAKTGS----TINLN 427
Cdd:COG1221 285 RsleeRLE---LIKHFFKEEAKRLNKPIK-VSKEVLKALLLYD-CPGNIGQLKSDIQlacaKAFLNYITNKkeeiEITLS 359
|
250
....*....|..
gi 931484037 428 DLSEKVRGALPT 439
Cdd:COG1221 360 DLPENVKKGLLK 371
|
|
| PtsP |
COG3605 |
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]; |
6-183 |
1.00e-22 |
|
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms];
Pssm-ID: 442824 [Multi-domain] Cd Length: 188 Bit Score: 95.35 E-value: 1.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 6 ERLIALFEINHKIHRIKNLQILLDEILDSAIRNIRAERGFIILADETGENYRTVASKSLKSED-----IRFSRSIVKETL 80
Cdd:COG3605 1 EMLKALRRISEAVASALDLDEALDRIVRRIAEALGVDVCSIYLLDPDGGRLELRATEGLNPEAvgkvrLPLGEGLVGLVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 81 KRKKTLLSPDIGADAGFKDRDSVRELNILSFICVPLIVPEatRALGTLYVDQRiGKKAFTQEDVAFLEAFTNLAAIAINN 160
Cdd:COG3605 81 ERGEPLNLADAASHPRFKYFPETGEEGFRSFLGVPIIRRG--RVLGVLVVQSR-EPREFTEEEVEFLVTLAAQLAEAIAN 157
|
170 180
....*....|....*....|...
gi 931484037 161 TTLMQKVMDENVRLHKEIKAKYE 183
Cdd:COG3605 158 AELLGELRAALAELSLAREEERE 180
|
|
| GAF |
smart00065 |
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ... |
23-167 |
1.12e-20 |
|
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Pssm-ID: 214500 [Multi-domain] Cd Length: 149 Bit Score: 88.21 E-value: 1.12e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 23 NLQILLDEILDSAIRNIRAERGFIILADETGEN-----YRTVASKSLKSEDIRFSRSIVKETLKRKKTLLSPDIGADAGF 97
Cdd:smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDENDRGelvlvAADGLTLPTLGIRFPLDEGLAGRVAETGRPLNIPDVEADPLF 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 98 KDRDSVRELNILSFICVPLIVPEatRALGTLYVDQRIGKKAFTQEDVAFLEAFTNLAAIAINNTTLMQKV 167
Cdd:smart00065 81 AEDLLGRYQGVRSFLAVPLVADG--ELVGVLALHNKKSPRPFTEEDEELLQALANQLAIALANAQLYEEL 148
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
211-356 |
3.14e-20 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 87.20 E-value: 3.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 211 VLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEAELFGsvrgaFTGAVDKPGLFQAAHGGTLFLDEIHHT 290
Cdd:cd00009 22 LLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG-----HFLVRLLFELAEKAKPGVLFIDEIDSL 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 931484037 291 SEAMQIKLLRVLQDKDIRRVGgttshKVDVRLICATNEDLReaiqkGSFRQDFYYRINVVtINVPP 356
Cdd:cd00009 97 SRGAQNALLRVLETLNDLRID-----RENVRVIGATNRPLL-----GDLDRALYDRLDIR-IVIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
188-357 |
1.28e-19 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 85.09 E-value: 1.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 188 VGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEaelfgsvrgaftga 267
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLE-------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 268 vdkpglfqAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDirrvggttshKVDVRLICATNEDLREAIQKGSFRQDFYYRI 347
Cdd:pfam14532 67 --------QAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFEL 128
|
170
....*....|
gi 931484037 348 NVVTINVPPL 357
Cdd:pfam14532 129 SALRLHVPPL 138
|
|
| GAF |
COG2203 |
GAF domain [Signal transduction mechanisms]; |
3-396 |
1.64e-18 |
|
GAF domain [Signal transduction mechanisms];
Pssm-ID: 441805 [Multi-domain] Cd Length: 712 Bit Score: 88.71 E-value: 1.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 3 LSQERLIALFEINHKIHRIKNLQILLDEILDSAIRNIRAERGFIILADETGENYRTVASKSLKSE---DIRFSRSIVKET 79
Cdd:COG2203 187 LELERLALLNEISQALRSALDLEELLQRILELAGELLGADRGAILLVDEDGGELELVAAPGLPEEelgRLPLGEGLAGRA 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 80 LKRKKTLLSPDIGADAGFKD--RDSVRELNILSFICVPLIVPEatRALGTLYVDQRiGKKAFTQEDVAFLEAFTNLAAIA 157
Cdd:COG2203 267 LRTGEPVVVNDASTDPRFAPslRELLLALGIRSLLCVPLLVDG--RLIGVLALYSK-EPRAFTEEDLELLEALADQAAIA 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 158 INNTTLMQKVMDENVRLHKEIKAKYEFPGVVGHSQPMQDVFERIEHVLDDNCTVLLTGESGSGkEVLAKAIHYNGERRTK 237
Cdd:COG2203 344 IERARLYEALEAALAALLQELALLRLLLDLELTLLRLRQLLLELLLALLLLLSLLGAELLLLL-LDAADLSGLLALEGLL 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 238 PFLAINCGALPETLLEAELFGSVRGAFTGAVDKPGLFQAAHGGTLFLDEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHK 317
Cdd:COG2203 423 LLDLLLLLLLLRRILLLRVLRRLLLGDEEGLVLLLALAELELLEILELLVLLAVILLALALLAALLLLLLLLLALLALSA 502
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 931484037 318 VDVRLICATNEDLREAIQKGSFRQDFYYRINVVTINVPPLRDRREDIPILAQHFLEKHATEKRKSFQGFDKKALDALMR 396
Cdd:COG2203 503 LAVLASLLLALLLLLLLLLLLLLLGLLAALAADLLLLAAALLEDLLILLLVLLLERELLTLVGVLLLLGLSVLLIELAL 581
|
|
| GAF |
pfam01590 |
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl ... |
23-158 |
2.10e-17 |
|
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54. This domain can bind biliverdine and phycocyanobilin (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 460259 [Multi-domain] Cd Length: 133 Bit Score: 78.67 E-value: 2.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 23 NLQILLDEILDSAIRNIRAERGFIILADETGENYRTVASKSLKSEDIRFSRSIVKETLKRKKTLLSPDIGADAGFKD-RD 101
Cdd:pfam01590 1 DLEEILQTILEELRELLGADRCALYLPDADGLEYLPPGARWLKAAGLEIPPGTGVTVLRTGRPLVVPDAAGDPRFLDpLL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 931484037 102 SVRELNILSFICVPLIVPEatRALGTLYVDQRigKKAFTQEDVAFLEAFTNLAAIAI 158
Cdd:pfam01590 81 LLRNFGIRSLLAVPIIDDG--ELLGVLVLHHP--RPPFTEEELELLEVLADQVAIAL 133
|
|
| GAF_2 |
pfam13185 |
GAF domain; The GAF domain is named after some of the proteins it is found in, including ... |
23-159 |
1.18e-11 |
|
GAF domain; The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes. The structure of a GAF domain shows that the domain shares a similar fold with the PAS domain. This domain can bind O2, CO and NO (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 433019 [Multi-domain] Cd Length: 137 Bit Score: 62.10 E-value: 1.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 23 NLQILLDEILDSAIRNIRAERGFIILADETGE--NYRTVASKSLKSEDIRFSRSIVKETLKRKKTLLSPDIGADAgFKDR 100
Cdd:pfam13185 3 DLEELLDAVLEAAVELGASAVGFILLVDDDGRlaAWGGAADELSAALDDPPGEGLVGEALRTGRPVIVNDLAADP-AKKG 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 931484037 101 DSVRELNILSFICVPLIVpeATRALGTLYVdQRIGKKAFTQEDVAFLEAFTNLAAIAIN 159
Cdd:pfam13185 82 LPAGHAGLRSFLSVPLVS--GGRVVGVLAL-GSNRPGAFDEEDLELLELLAEQAAIAIE 137
|
|
| GAF_3 |
pfam13492 |
GAF domain; |
23-160 |
1.88e-10 |
|
GAF domain;
Pssm-ID: 433253 [Multi-domain] Cd Length: 129 Bit Score: 58.54 E-value: 1.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 23 NLQILLDEILDSAIRNIRAERGFIILADETGENYRTVASKSlksEDIRFSRSIVKETLKRKKTLLSPDIGADAGFKDRDS 102
Cdd:pfam13492 1 SLDEILEALLKLLVRLLGAERAAVYLLDEDGNKLQVAAGYD---GEPDPSESLDADSPLARRALSSGEPISGLGSAGEDG 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 931484037 103 vreLNILSFICVPLIVPEatRALGTLYVdQRIGKKAFTQEDVAFLEAFTNLAAIAINN 160
Cdd:pfam13492 78 ---LPDGPALVVPLVAGR--RVIGVLAL-ASSKPRAFDAEDLRLLESLAAQIATAIEN 129
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
210-346 |
2.30e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.92 E-value: 2.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 210 TVLLTGESGSGKEVLAKAIHYNGERRTKPFLAINCGALPETLLEA---ELFGSVRGAFTGAVDKPGLFQAAHG---GTLF 283
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLRLALALARKlkpDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 931484037 284 LDEIHHTSEAMQIKLLRVLQDkdiRRVGGTTSHKVDVRLICATN--EDLREAIQKGSFRQDFYYR 346
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLL 145
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
458-499 |
7.64e-08 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 49.81 E-value: 7.64e-08
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 931484037 458 DELEREYINTILLQVAGNQTEAAKIMGIPRTTLRGKMKKLGL 499
Cdd:COG2901 41 AEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGL 82
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
458-496 |
3.13e-07 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 46.62 E-value: 3.13e-07
10 20 30
....*....|....*....|....*....|....*....
gi 931484037 458 DELEREYINTILLQVAGNQTEAAKIMGIPRTTLRGKMKK 496
Cdd:pfam02954 2 EEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| fis |
PRK00430 |
DNA-binding transcriptional regulator Fis; |
459-499 |
1.13e-06 |
|
DNA-binding transcriptional regulator Fis;
Pssm-ID: 179020 [Multi-domain] Cd Length: 95 Bit Score: 46.98 E-value: 1.13e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 931484037 459 ELEREYINTILLQVAGNQTEAAKIMGIPRTTLRGKMKKLGL 499
Cdd:PRK00430 54 EVEAPLLDMVMQYTRGNQTRAALMLGINRGTLRKKLKKYGM 94
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
211-328 |
7.03e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 45.75 E-value: 7.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 211 VLLTGESGSGK----EVLAKAIhyngerRTKPFLAINCgalPETLLEAELFGS--VRGAFTGAVDKPGLFQAAHGGTLFL 284
Cdd:pfam07728 2 VLLVGPPGTGKtelaERLAAAL------SNRPVFYVQL---TRDTTEEDLFGRrnIDPGGASWVDGPLVRAAREGEIAVL 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 931484037 285 DEIHHTSEAMQIKLLRVLQDKDIRRVGGTTSHKV---DVRLICATNE 328
Cdd:pfam07728 73 DEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMNP 119
|
|
| MsrC |
COG1956 |
GAF domain-containing protein, putative methionine-R-sulfoxide reductase [Defense mechanisms, ... |
69-160 |
1.14e-04 |
|
GAF domain-containing protein, putative methionine-R-sulfoxide reductase [Defense mechanisms, Signal transduction mechanisms];
Pssm-ID: 441559 [Multi-domain] Cd Length: 156 Bit Score: 42.51 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 69 IRFSRSIVKETLKRKKTLLSPDIGADAGFKDRDSvrelNILSFICVPLIVPEatRALGTLYVDQRIgKKAFTQEDVAFLE 148
Cdd:COG1956 72 IPFGKGVCGTAAAEGETQLVPDVHAFPGHIACDS----ASRSEIVVPIFKDG--EVIGVLDIDSPT-PGRFDEEDQAGLE 144
|
90
....*....|..
gi 931484037 149 AFTNLAAIAINN 160
Cdd:COG1956 145 ALAALLAEALDA 156
|
|
| PRK01905 |
PRK01905 |
Fis family transcriptional regulator; |
460-499 |
8.23e-04 |
|
Fis family transcriptional regulator;
Pssm-ID: 179348 [Multi-domain] Cd Length: 77 Bit Score: 38.25 E-value: 8.23e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 931484037 460 LEREYINTILLQVAGNQTEAAKIMGIPRTTLRGKMKKLGL 499
Cdd:PRK01905 37 VEKPLLEVVMEQAGGNQSLAAEYLGINRNTLRKKLQQHGL 76
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
211-334 |
9.60e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 39.11 E-value: 9.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 211 VLLTGESGSGKEVLAKAIhynGERRTKPFLAINCGAL-PETLLEAElfGSVRGAFTGAvdkpglfQAAHGGTLFLDEIH- 288
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAV---AKELGAPFIEISGSELvSKYVGESE--KRLRELFEAA-------KKLAPCVIFIDEIDa 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 931484037 289 --HTSEAMQIKLLRVLQDKDIRRVGGTTSHKVDVRLICATN--EDLREAI 334
Cdd:pfam00004 69 laGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATNrpDKLDPAL 118
|
|
| COG4567 |
COG4567 |
DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ... |
443-496 |
1.02e-03 |
|
DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains [Signal transduction mechanisms, Transcription];
Pssm-ID: 443624 [Multi-domain] Cd Length: 177 Bit Score: 39.90 E-value: 1.02e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 931484037 443 SAPRAQDAKGKPLTYDELEREYINTILLQVAGNQTEAAKIMGIPRTTLRGKMKK 496
Cdd:COG4567 119 AEGDAPAPPENPMSLDRLEWEHIQRVLAECDGNISATARALGMHRRTLQRKLAK 172
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
350-431 |
7.48e-03 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 38.31 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931484037 350 VTINVPPLRDRRedipiLAQhFLEKHATEKRKSFqgfDKKALDALMryDWTENNVRELENEIERAVIYAKTGSTINLNDL 429
Cdd:COG1466 119 VVVECYPLKERE-----LPA-WIRQRLKAAGLRI---DPDAAQLLA--ERVGGDLLALAQELEKLALYAGDGGTITLEDV 187
|
..
gi 931484037 430 SE 431
Cdd:COG1466 188 EA 189
|
|
| |
