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Conserved domains on  [gi|931474929|gb|KPK56357|]
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MAG: hypothetical protein AMS22_01595 [Thiotrichales bacterium SG8_50]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 11446337)

zinc ribbon domain-containing protein may bind nucleic acids, similar to Mycobacterium tuberculosis uncharacterized protein Rv2229c

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 1-232 2.56e-35

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


:

Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 125.42  E-value: 2.56e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   1 MREELVALAKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKK 80
Cdd:COG1579    2 MPEDLRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQ 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  81 VAQASSIREADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKL 160
Cdd:COG1579   82 LGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 931474929 161 LNGRDELAAKISTQVIKRYERLRKGLPN-AVVIINDSTCTACRMALPPQLTIELQRADELHQCPHCRRIIIHK 232
Cdd:COG1579  162 EAEREELAAKIPPELLALYERIRKRKNGlAVVPVEGGACGGCFMELPPQELNEIRAADEIVRCPNCGRILYRE 234
 
Name Accession Description Interval E-value
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 1-232 2.56e-35

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 125.42  E-value: 2.56e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   1 MREELVALAKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKK 80
Cdd:COG1579    2 MPEDLRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQ 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  81 VAQASSIREADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKL 160
Cdd:COG1579   82 LGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 931474929 161 LNGRDELAAKISTQVIKRYERLRKGLPN-AVVIINDSTCTACRMALPPQLTIELQRADELHQCPHCRRIIIHK 232
Cdd:COG1579  162 EAEREELAAKIPPELLALYERIRKRKNGlAVVPVEGGACGGCFMELPPQELNEIRAADEIVRCPNCGRILYRE 234
zf-RING_7 pfam02591
C4-type zinc ribbon domain; Zn-ribbon_9 is a Zn-ribbon domain rich in aromatic and positively ...
 197-229 2.15e-11

C4-type zinc ribbon domain; Zn-ribbon_9 is a Zn-ribbon domain rich in aromatic and positively charged amino acid residues. This C-terminal Zn-ribbon domain consists of two beta-strands acting as a scaffold for the two Zn knuckles. Both pairs of cysteines making up the two Zn knuckles are situated at highly conserved sharp beta-turns, an arrangement that facilitates the tetrahedral coordination of the divalent Zn ion. The two Zn-knuckle cysteine motifs are separated by 20 residues, 9 of which form an alpha-helix (helix 4).Structural modelling suggests this domain may bind nucleic acids. The domain appears to bind flaA-mRNA, thus contributing to flagellum formation and motility.


Pssm-ID: 426857 [Multi-domain]  Cd Length: 33  Bit Score: 56.75  E-value: 2.15e-11
                          10        20        30
                  ....*....|....*....|....*....|...
gi 931474929  197 TCTACRMALPPQLTIELQRADELHQCPHCRRII 229
Cdd:pfam02591   1 RCGGCRMELPPQLLNEIRAAAEIVRCPECGRIL 33
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 11-183 2.13e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.13  E-value: 2.13e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    11 LAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKVAQASsiREA 90
Cdd:TIGR02168  756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE--RRI 833

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    91 DAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDF----------EEARGVLASEEESSAARVAELEQERGKL 160
Cdd:TIGR02168  834 AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELeallneraslEEALALLRSELEELSEELRELESKRSEL 913

                          170       180
                   ....*....|....*....|...
gi 931474929   161 LNGRDELAAKIStQVIKRYERLR 183
Cdd:TIGR02168  914 RRELEELREKLA-QLELRLEGLE 935
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 16-114 1.18e-04

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 43.02  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   16 DSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKVAQASsireADAAER 95
Cdd:PRK11448  142 NLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETS----QERKQK 217

                          90       100
                  ....*....|....*....|.
gi 931474929   96 EVEANRRAIKERE--EELGRI 114
Cdd:PRK11448  218 RKEITDQAAKRLElsEEETRI 238
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
 10-158 2.45e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 38.46  E-value: 2.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    10 KLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKaqqSSELKergeglqRARKKVAQAssire 89
Cdd:smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD---PTELD-------RAKEKLKKL----- 216

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 931474929    90 adaaEREVEANRRAIKEREEELGRIADAIEAKTA-------SLAEREKDFEEARGVLASEEESSAARVAELEQERG 158
Cdd:smart00787 217 ----LQEIMIKVKKLEELEEELQELESKIEDLTNkkselntEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTG 288
 
Name Accession Description Interval E-value
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 1-232 2.56e-35

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 125.42  E-value: 2.56e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   1 MREELVALAKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKK 80
Cdd:COG1579    2 MPEDLRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQ 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  81 VAQASSIREADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKL 160
Cdd:COG1579   82 LGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 931474929 161 LNGRDELAAKISTQVIKRYERLRKGLPN-AVVIINDSTCTACRMALPPQLTIELQRADELHQCPHCRRIIIHK 232
Cdd:COG1579  162 EAEREELAAKIPPELLALYERIRKRKNGlAVVPVEGGACGGCFMELPPQELNEIRAADEIVRCPNCGRILYRE 234
zf-RING_7 pfam02591
C4-type zinc ribbon domain; Zn-ribbon_9 is a Zn-ribbon domain rich in aromatic and positively ...
 197-229 2.15e-11

C4-type zinc ribbon domain; Zn-ribbon_9 is a Zn-ribbon domain rich in aromatic and positively charged amino acid residues. This C-terminal Zn-ribbon domain consists of two beta-strands acting as a scaffold for the two Zn knuckles. Both pairs of cysteines making up the two Zn knuckles are situated at highly conserved sharp beta-turns, an arrangement that facilitates the tetrahedral coordination of the divalent Zn ion. The two Zn-knuckle cysteine motifs are separated by 20 residues, 9 of which form an alpha-helix (helix 4).Structural modelling suggests this domain may bind nucleic acids. The domain appears to bind flaA-mRNA, thus contributing to flagellum formation and motility.


Pssm-ID: 426857 [Multi-domain]  Cd Length: 33  Bit Score: 56.75  E-value: 2.15e-11
                          10        20        30
                  ....*....|....*....|....*....|...
gi 931474929  197 TCTACRMALPPQLTIELQRADELHQCPHCRRII 229
Cdd:pfam02591   1 RCGGCRMELPPQLLNEIRAAAEIVRCPECGRIL 33
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
3-204 6.51e-10

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 58.77  E-value: 6.51e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    3 EELVALA-KLAEMDDSARDIDAELERIpkRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKV 81
Cdd:COG4913   255 EPIRELAeRYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI 332

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   82 AQASSIREaDAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKLL 161
Cdd:COG4913   333 RGNGGDRL-EQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE 411

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 931474929  162 NGRDELAAKIST--QVIKRYERLRKGLPNAVVIINDSTCTACRMA 204
Cdd:COG4913   412 AALRDLRRELREleAEIASLERRKSNIPARLLALRDALAEALGLD 456
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 2-178 2.81e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 50.71  E-value: 2.81e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   2 REELVALAKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKkv 81
Cdd:COG1196  225 LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-- 302

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  82 AQASSIREADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKLL 161
Cdd:COG1196  303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382

                        170
                 ....*....|....*..
gi 931474929 162 NGRDELAAKISTQVIKR 178
Cdd:COG1196  383 ELAEELLEALRAAAELA 399
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 2-184 1.29e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.78  E-value: 1.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   2 REELVALAKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKV 81
Cdd:COG1196  316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  82 AQASSirEADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKLL 161
Cdd:COG1196  396 AELAA--QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473

                        170       180
                 ....*....|....*....|...
gi 931474929 162 NGRDELAAKISTQVIKRYERLRK 184
Cdd:COG1196  474 LLEAALAELLEELAEAAARLLLL 496
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 7-174 1.40e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.78  E-value: 1.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   7 ALAKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKVAQASS 86
Cdd:COG1196  237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  87 IREADAAEREVEANRRA-----IKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKLL 161
Cdd:COG1196  317 RLEELEEELAELEEELEeleeeLEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396

                        170
                 ....*....|...
gi 931474929 162 NGRDELAAKISTQ 174
Cdd:COG1196  397 ELAAQLEELEEAE 409
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 2-184 1.83e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.39  E-value: 1.83e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   2 REELVALAKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGL-QRARKK 80
Cdd:COG1196  302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELaEAEEEL 381

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  81 VAQASSIREADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKL 160
Cdd:COG1196  382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461

                        170       180
                 ....*....|....*....|....
gi 931474929 161 LNGRDELAAKISTQVIKRYERLRK 184
Cdd:COG1196  462 LELLAELLEEAALLEAALAELLEE 485
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 11-183 2.13e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.13  E-value: 2.13e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    11 LAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKVAQASsiREA 90
Cdd:TIGR02168  756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE--RRI 833

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    91 DAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDF----------EEARGVLASEEESSAARVAELEQERGKL 160
Cdd:TIGR02168  834 AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELeallneraslEEALALLRSELEELSEELRELESKRSEL 913

                          170       180
                   ....*....|....*....|...
gi 931474929   161 LNGRDELAAKIStQVIKRYERLR 183
Cdd:TIGR02168  914 RRELEELREKLA-QLELRLEGLE 935
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 23-184 2.11e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.93  E-value: 2.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  23 AELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKVAQAssIREADAAEREVEANRR 102
Cdd:COG1196  298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE--LAEAEEALLEAEAELA 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929 103 AIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKLLNGRDELAAKISTQVIKRYERL 182
Cdd:COG1196  376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455


                 ..
gi 931474929 183 RK 184
Cdd:COG1196  456 EE 457
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 2-180 8.19e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 43.52  E-value: 8.19e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929     2 REELVALAKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQqsSELKERGEGLQRARKKV 81
Cdd:TIGR02169  730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEV 807

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    82 A-QASSIREADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKL 160
Cdd:TIGR02169  808 SrIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887

                          170       180
                   ....*....|....*....|
gi 931474929   161 LNGRDELAAKISTQVIKRYE 180
Cdd:TIGR02169  888 KKERDELEAQLRELERKIEE 907
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 9-184 9.06e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.83  E-value: 9.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   9 AKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQ---RARKKVAQAS 85
Cdd:COG4942   41 KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAellRALYRLGRQP 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  86 SIREADAAEREVEANRRAIKereeeLGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKL---LN 162
Cdd:COG4942  121 PLALLLSPEDFLDAVRRLQY-----LKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALealKA 195

                        170       180
                 ....*....|....*....|..
gi 931474929 163 GRDELAAKISTQVIKRYERLRK 184
Cdd:COG4942  196 ERQKLLARLEKELAELAAELAE 217
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 19-169 9.99e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 43.13  E-value: 9.99e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    19 RDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKK------VAQASSIREADA 92
Cdd:TIGR02169  233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEkigeleAEIASLERSIAE 312

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 931474929    93 AEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKLLNGRDELAA 169
Cdd:TIGR02169  313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 16-114 1.18e-04

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 43.02  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   16 DSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKVAQASsireADAAER 95
Cdd:PRK11448  142 NLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETS----QERKQK 217

                          90       100
                  ....*....|....*....|.
gi 931474929   96 EVEANRRAIKERE--EELGRI 114
Cdd:PRK11448  218 RKEITDQAAKRLElsEEETRI 238
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 2-172 1.41e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.74  E-value: 1.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929     2 REELVALAKLAEMDDSARDID---AELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRAR 78
Cdd:TIGR02168  667 KTNSSILERRREIEELEEKIEeleEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    79 KKVAQASSIREADAAEREVEAnrraikEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERG 158
Cdd:TIGR02168  747 ERIAQLSKELTELEAEIEELE------ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820

                          170
                   ....*....|....
gi 931474929   159 KLLNGRDELAAKIS 172
Cdd:TIGR02168  821 NLRERLESLERRIA 834
PTZ00121 PTZ00121
MAEBL; Provisional
 47-159 3.33e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.67  E-value: 3.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   47 AQERRQLAEAEQLKAQQSSELKERGEGLQRAR--KKVAQASSIREADAAE--REVEANRRAIKERE-EELGRIADAIEAK 121
Cdd:PTZ00121 1124 AEDARKAEEARKAEDARKAEEARKAEDAKRVEiaRKAEDARKAEEARKAEdaKKAEAARKAEEVRKaEELRKAEDARKAE 1203

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 931474929  122 TASLAEREKDFEEARgvlASEEESSAARVAELEQERGK 159
Cdd:PTZ00121 1204 AARKAEEERKAEEAR---KAEDAKKAEAVKKAEEAKKD 1238
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1-128 1.07e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    1 MREELVALAKLAEMDDSARDIDA---ELERIPKRLQELRTG---VQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGL 74
Cdd:COG4913   643 LQERREALQRLAEYSWDEIDVASaerEIAELEAELERLDASsddLAALEEQLEELEAELEELEEELDELKGEIGRLEKEL 722

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 931474929   75 QRARKKVAQASSIREADAAEREVEANRRAIKEREEELG-----RIADAIEAKTASLAER 128
Cdd:COG4913   723 EQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGdaverELRENLEERIDALRAR 781
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 9-174 1.54e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 39.04  E-value: 1.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   9 AKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKVAQASS-- 86
Cdd:COG3883   30 AELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDVll 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  87 --------IREADAAEREVEANRRAI---KEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQ 155
Cdd:COG3883  110 gsesfsdfLDRLSALSKIADADADLLeelKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSA 189

                        170
                 ....*....|....*....
gi 931474929 156 ERGKLLNGRDELAAKISTQ 174
Cdd:COG3883  190 EEAAAEAQLAELEAELAAA 208
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
2-177 1.85e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.13  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    2 REELVAL-AKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLL--AQERRQLAEAEQLKAQqsseLKERGEGLQRAR 78
Cdd:COG4913   616 EAELAELeEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELER----LDASSDDLAALE 691

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   79 KKVAQASsiREADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASE---EESSAARVAELEQ 155
Cdd:COG4913   692 EQLEELE--AELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEErfaAALGDAVERELRE 769

                         170       180
                  ....*....|....*....|..
gi 931474929  156 ERGKLLNGRDELAAKISTQVIK 177
Cdd:COG4913   770 NLEERIDALRARLNRAEEELER 791
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 5-174 1.92e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 38.98  E-value: 1.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   5 LVALAKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKVAQA 84
Cdd:COG4942    9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  85 SsiREADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKLLNGR 164
Cdd:COG4942   89 E--KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166

                        170
                 ....*....|
gi 931474929 165 DELAAKISTQ 174
Cdd:COG4942  167 AELEAERAEL 176
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 40-134 2.02e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 39.04  E-value: 2.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  40 QMLESLLAQERRQ----------LAEAEQLK---AQQSSELKERGEGL-----QRARKKVAQASSirEADAAEREVEANR 101
Cdd:PRK00409 520 ELIASLEELERELeqkaeeaealLKEAEKLKeelEEKKEKLQEEEDKLleeaeKEAQQAIKEAKK--EADEIIKELRQLQ 597

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 931474929 102 R----AIKERE--EELGRIADAIEAKTASLAEREKDFEE 134
Cdd:PRK00409 598 KggyaSVKAHEliEARKRLNKANEKKEKKKKKQKEKQEE 636
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 7-169 2.14e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.76  E-value: 2.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   7 ALAKLAEMD---DSARDIDAELERipkRLQELRTgvqmlESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKVAQ 83
Cdd:COG1196  177 AERKLEATEenlERLEDILGELER---QLEPLER-----QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAEL 248

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  84 ASSIREADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKLLNG 163
Cdd:COG1196  249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL 328


                 ....*.
gi 931474929 164 RDELAA 169
Cdd:COG1196  329 EEELEE 334
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
 10-158 2.45e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 38.46  E-value: 2.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    10 KLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKaqqSSELKergeglqRARKKVAQAssire 89
Cdd:smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD---PTELD-------RAKEKLKKL----- 216

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 931474929    90 adaaEREVEANRRAIKEREEELGRIADAIEAKTA-------SLAEREKDFEEARGVLASEEESSAARVAELEQERG 158
Cdd:smart00787 217 ----LQEIMIKVKKLEELEEELQELESKIEDLTNkkselntEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTG 288
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 2-167 4.23e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 37.99  E-value: 4.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   2 REELVALAKLAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKV 81
Cdd:COG1196  614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  82 AQASSIREADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKLL 161
Cdd:COG1196  694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773


                 ....*.
gi 931474929 162 NGRDEL 167
Cdd:COG1196  774 REIEAL 779
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
46-186 7.25e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 37.20  E-value: 7.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   46 LAQERRQLAEAEQLKAQQSSELKERGEGLQRARKKVAQASSIREADAAEREVEANRRAIKEREEELGRIA------DAIE 119
Cdd:COG4913   612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDassddlAALE 691

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 931474929  120 AKTASLAEREKDFEEARGVLASEEESSAARVAELEQERGKLLNGRDELAAKISTQVIKRYERLRKGL 186
Cdd:COG4913   692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 21-170 7.40e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 37.24  E-value: 7.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   21 IDAELERIPKRLQELRTGVQMLESLLAQERRQLAEAEQLKAQQsSELKERGEGLQrarkkvaqaSSIREADAAEREVEAN 100
Cdd:COG3096   517 LRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELL-AELEAQLEELE---------EQAAEAVEQRSELRQQ 586

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 931474929  101 RRAIKEREEELGRIADA-IEAKTASLAEREKDFEEargvLASEEESSAARVAELEQERGkLLNGRDELAAK 170
Cdd:COG3096   587 LEQLRARIKELAARAPAwLAAQDALERLREQSGEA----LADSQEVTAAMQQLLERERE-ATVERDELAAR 652
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
7-184 8.59e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 37.20  E-value: 8.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929    7 ALAKLAEMDDSARDIDAELERIPKRLQElrtgvqmLESLLAQERRQLAEAEQLKAQQSSE-----LKERGEGLQRARKKV 81
Cdd:COG4913   608 NRAKLAALEAELAELEEELAEAEERLEA-------LEAELDALQERREALQRLAEYSWDEidvasAEREIAELEAELERL 680

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   82 AQASSirEADAAEREVEANRRAIKEREEELGRIADAIEAKTASLAEREKDFEEARGVLAS-EEESSAARVAELEQERGKL 160
Cdd:COG4913   681 DASSD--DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAAA 758

                         170       180
                  ....*....|....*....|....
gi 931474929  161 LngRDELAAKISTQVIKRYERLRK 184
Cdd:COG4913   759 L--GDAVERELRENLEERIDALRA 780
PTZ00121 PTZ00121
MAEBL; Provisional
 47-184 8.78e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 37.04  E-value: 8.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929   47 AQERRQLAEAEQLKAQQSSELKERGEGLQRArKKVAQASSIREADAAEREVEANRRAIKEREEELGRIADAIEAKTASLA 126
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKA-EDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKA 1172

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 931474929  127 EREKDFEEARgvlASEEESSAARVAELEQERGKLLNGRDELAAKIstQVIKRYERLRK 184
Cdd:PTZ00121 1173 EDAKKAEAAR---KAEEVRKAEELRKAEDARKAEAARKAEEERKA--EEARKAEDAKK 1225
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
11-171 9.59e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 36.94  E-value: 9.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  11 LAEMDDSARDIDAELERIPKRLQELRTGVQMLESLLAQERR------QLAEAEQLKAQQSSELKERGEGLQRARKKVAQA 84
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRierleeRREDLEELIAERRETIEEKRERAEELRERAAEL 549

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 931474929  85 SSIRE-----ADAAEREVEANRRAIKEREEELGRIADAIEAkTASLAEREKDFEEARGVLASEEESSAARVAELEQERGK 159
Cdd:PRK02224 550 EAEAEekreaAAEAEEEAEEAREEVAELNSKLAELKERIES-LERIRTLLAAIADAEDEIERLREKREALAELNDERRER 628

                        170
                 ....*....|....*
gi 931474929 160 LLNGRD---ELAAKI 171
Cdd:PRK02224 629 LAEKRErkrELEAEF 643
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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