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Conserved domains on  [gi|930157993|gb|ALF40255|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Spinus atratus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-293 1.43e-147

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 417.69  E-value: 1.43e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSS 80
Cdd:MTH00112  16 GTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSC 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNPTLLTTLAILSVAIGGWMGLNQTQI 160
Cdd:MTH00112  96 TLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 161 RKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLP 240
Cdd:MTH00112 176 RKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLP 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 930157993 241 PLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHT 293
Cdd:MTH00112 256 PLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNT 308
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-293 1.43e-147

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 417.69  E-value: 1.43e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSS 80
Cdd:MTH00112  16 GTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSC 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNPTLLTTLAILSVAIGGWMGLNQTQI 160
Cdd:MTH00112  96 TLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 161 RKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLP 240
Cdd:MTH00112 176 RKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLP 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 930157993 241 PLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHT 293
Cdd:MTH00112 256 PLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNT 308
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 8-261 7.65e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 7.65e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993    8 SNHWIMAWTGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLS--------HPT 78
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgglnSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   79 SSLI---LTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIM-KLPPI-----TLLYMTSSSLNPTLLTTLAILSVAI 149
Cdd:pfam00361  81 LLLLfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  150 GGWMGLNQTQIRKILAFSSISHLGWMTIVI----IYNPKLTLLNFYLYIMMTTAVFLTLNSI-----KVLKLSTLMTAWT 220
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 930157993  221 KVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMI 261
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWI 281
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-283 2.36e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.51  E-value: 2.36e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLF-SSMTNAwFTGQWDITQLS--- 75
Cdd:COG1007  114 GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAaal 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  76 --HPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLSTGLILSTIMKL----PPITLLYMTSSSLNP---TLL 139
Cdd:COG1007  193 aaGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLL 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 140 TTLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWMTIVIIYNPKLTL--LNFYL--YIMMTTAVFLTLNSIK-----VL 210
Cdd:COG1007  273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkggeAE 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 930157993 211 KLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAY 283
Cdd:COG1007  353 EIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-282 1.63e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 99.64  E-value: 1.63e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993    1 GTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTS 79
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   80 SLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLP---PITLLYMTS----SSLNPTLLT 140
Cdd:TIGR01770 194 NGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfgfSEAWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  141 TLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTT-------AVFLTLNSIK---VL 210
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYAlmslgafGVLSLLRSYKdewIE 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 930157993  211 KLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLA 282
Cdd:TIGR01770 354 YISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-293 1.43e-147

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 417.69  E-value: 1.43e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSS 80
Cdd:MTH00112  16 GTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSC 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNPTLLTTLAILSVAIGGWMGLNQTQI 160
Cdd:MTH00112  96 TLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 161 RKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLP 240
Cdd:MTH00112 176 RKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLP 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 930157993 241 PLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHT 293
Cdd:MTH00112 256 PLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNT 308
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-293 1.79e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 371.83  E-value: 1.79e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSS 80
Cdd:MTH00135  16 GTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPT 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSlNPTLLTTLAILSVAIGGWMGLNQTQI 160
Cdd:MTH00135  96 TMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQL 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 161 RKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLP 240
Cdd:MTH00135 175 RKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLP 254

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 930157993 241 PLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHT 293
Cdd:MTH00135 255 PLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNT 307
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-293 8.62e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 362.32  E-value: 8.62e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSS 80
Cdd:MTH00070  16 GTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPT 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNPTLLTTLAILSVAIGGWMGLNQTQI 160
Cdd:MTH00070  96 IMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 161 RKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLP 240
Cdd:MTH00070 176 RKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLP 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 930157993 241 PLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHT 293
Cdd:MTH00070 256 PTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNT 308
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-293 5.41e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 327.19  E-value: 5.41e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSS 80
Cdd:MTH00105  16 GTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTAS 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNPTLLTTLAILSVAIGGWMGLNQTQI 160
Cdd:MTH00105  96 TLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 161 RKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLP 240
Cdd:MTH00105 176 RKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLP 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 930157993 241 PLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAYCTTITLPPHT 293
Cdd:MTH00105 256 PLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPST 308
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-291 2.44e-89

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 269.53  E-value: 2.44e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSS 80
Cdd:MTH00200  16 GTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSE 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNPTLLTTLAILSVAIGGWMGLNQTQI 160
Cdd:MTH00200  96 TLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQL 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 161 RKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLP 240
Cdd:MTH00200 176 RKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLP 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 930157993 241 PLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAYCTTITLPP 291
Cdd:MTH00200 256 PLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSP 306
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-292 1.71e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 247.15  E-value: 1.71e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSS 80
Cdd:MTH00041  16 GTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSS 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNPTLLTTLAILSVAIGGWMGLNQTQI 160
Cdd:MTH00041  96 IIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQT 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 161 RKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLP 240
Cdd:MTH00041 176 RKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLP 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 930157993 241 PLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAYCTTITLPPH 292
Cdd:MTH00041 256 PLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-283 1.88e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 179.63  E-value: 1.88e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGqwditqLSHPTSS 80
Cdd:MTH00160  17 GTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM------LFNNISS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTsssLNPTLLTTLAILSVAIGGWMGLNQTQI 160
Cdd:MTH00160  91 MLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAIGGLNQTSL 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 161 RKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLP 240
Cdd:MTH00160 168 RKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLP 247

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 930157993 241 PLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAY 283
Cdd:MTH00160 248 PFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY 290
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-287 1.61e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 156.20  E-value: 1.61e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDitqlshptSS 80
Cdd:MTH00144  16 GTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF--------SM 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNP-TLLTTLAILSVAIGGWMGLNQTQ 159
Cdd:MTH00144  88 SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQ 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 160 IRKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSiKVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGL 239
Cdd:MTH00144 168 VRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLSIISLLLSLGGL 246

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 930157993 240 PPLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAYCTTI 287
Cdd:MTH00144 247 PPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-292 6.50e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 152.24  E-value: 6.50e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSsMTNAWFTgqwdITQLSHPTSs 80
Cdd:MTH00011  18 GTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG-MTMMWSF----PSLLKNITA- 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNPTLLTTLAILSVAIGGWMGLNQTQI 160
Cdd:MTH00011  92 LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQL 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 161 RKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLKLSTLMTAWTKVPSLNAMLLLTLLSLAGLP 240
Cdd:MTH00011 172 RPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLP 251

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 930157993 241 PLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAYcTTITLPPH 292
Cdd:MTH00011 252 PFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPT 302
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-287 3.80e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 131.72  E-value: 3.80e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMtnAWFTGQWDITqlshpTSS 80
Cdd:MTH00197  10 GVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLYLSL-----LSV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSslNPTLLTTLAILSVAIGGWMGLNQTQI 160
Cdd:MTH00197  83 VLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 161 RKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLKLSTlMTAWTKVPSLNAMLLLTLLSLAG-L 239
Cdd:MTH00197 161 RQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGLSFLSLGgL 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 930157993 240 PPLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAYCTTI 287
Cdd:MTH00197 240 PPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-281 3.56e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 108.58  E-value: 3.56e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASALVLFS-------------SMTNAWFT 66
Cdd:MTH00196   5 GILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  67 GQWDITQLSHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYmtSSSLNPTLLTTLAILS 146
Cdd:MTH00196  85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 147 VAIGGWMGLNQTQIRKILAFSSISHLGWMTIVI----IYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLK--LSTLMTAWT 220
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSR 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 930157993 221 KVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRL 281
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 8-261 7.65e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 7.65e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993    8 SNHWIMAWTGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLS--------HPT 78
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgglnSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   79 SSLI---LTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIM-KLPPI-----TLLYMTSSSLNPTLLTTLAILSVAI 149
Cdd:pfam00361  81 LLLLfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  150 GGWMGLNQTQIRKILAFSSISHLGWMTIVI----IYNPKLTLLNFYLYIMMTTAVFLTLNSI-----KVLKLSTLMTAWT 220
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 930157993  221 KVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMI 261
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWI 281
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-283 2.36e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.51  E-value: 2.36e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLF-SSMTNAwFTGQWDITQLS--- 75
Cdd:COG1007  114 GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAaal 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  76 --HPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLSTGLILSTIMKL----PPITLLYMTSSSLNP---TLL 139
Cdd:COG1007  193 aaGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLL 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 140 TTLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWMTIVIIYNPKLTL--LNFYL--YIMMTTAVFLTLNSIK-----VL 210
Cdd:COG1007  273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkggeAE 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 930157993 211 KLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAY 283
Cdd:COG1007  353 EIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-281 3.87e-25

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 104.13  E-value: 3.87e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTS 79
Cdd:PRK05777 115 GMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALA 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  80 S------------LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKL----PPITLLYMTSSSLNPT---LLT 140
Cdd:PRK05777 195 DgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLA 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 141 TLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWMTIVIIYNPKLTL--LNFYL--YIMMTTAVFLTLNSIK-----VLK 211
Cdd:PRK05777 275 IIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeAES 354

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 930157993 212 LSTL-MTAWTKvPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRL 281
Cdd:PRK05777 355 ISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-282 1.63e-23

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 99.64  E-value: 1.63e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993    1 GTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTS 79
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   80 SLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLP---PITLLYMTS----SSLNPTLLT 140
Cdd:TIGR01770 194 NGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfgfSEAWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  141 TLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTT-------AVFLTLNSIK---VL 210
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYAlmslgafGVLSLLRSYKdewIE 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 930157993  211 KLSTLMTAWTKVPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLA 282
Cdd:TIGR01770 354 YISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-252 2.25e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 93.16  E-value: 2.25e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDI----TQLS 75
Cdd:MTH00199 109 GSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILT 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  76 HPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNPTLLTtlAILSVAIGGWMGL 155
Cdd:MTH00199 189 GDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGAL 266

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 156 NQTQIRKILAFSSISHLGW----MTIVIIYNPKLTLLNFYLYIMMTTAVFLTLNSIKVLK--LSTLMTAWTKVPSLNAML 229
Cdd:MTH00199 267 NQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIALTL 346

                        250       260
                 ....*....|....*....|...
gi 930157993 230 LLTLLSLAGLPPLTGFLPKWLII 252
Cdd:MTH00199 347 ALTFLSIAGIPPLAGFLSKWLIL 369
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 1-177 6.39e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.59  E-value: 6.39e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   1 GTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSI---------EAATKYFLTQAAASALVLFSSMTNAWFTGQWDI 71
Cdd:MTH00198 200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEGM 279

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  72 --TQLSHPTSS------------LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLymTSSSLNPT 137
Cdd:MTH00198 280 lgTILSATLETtnielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITSK 357

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 930157993 138 LLTTLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWMTI 177
Cdd:MTH00198 358 LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 15-264 1.61e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.95  E-value: 1.61e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  15 WTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSSL----------ILT 84
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELdpglllaafaLLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  85 SAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNP--------TLLTTLAILSVAIGGWMGLN 156
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGadpalflgTLLLVLGLLTMLVGALGALA 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 157 QTQIRKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYI----MMTTAVFLTLNSIKVL----KLSTLMTAWTKVPSLNAM 228
Cdd:COG0651  293 QRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAAGAIERAtgtrDLDKLGGLGKRMPLTAAA 372

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 930157993 229 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMIPAA 264
Cdd:COG0651  373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 34-179 6.93e-13

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 68.57  E-value: 6.93e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  34 HPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQW--DITQLSHPTSSLILTSAI--------AMKLGLVPFHFWFPEV 103
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQLLLflaffiafAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 104 LQGSPLSTGLILSTIM-KLP-------PITLLYMTSSSLNPTLLTtLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWM 175
Cdd:COG1008  236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                 ....
gi 930157993 176 TIVI 179
Cdd:COG1008  315 LLGI 318
ndhB CHL00049
NADH dehydrogenase subunit 2
 36-193 1.25e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 67.72  E-value: 1.25e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  36 RSIEAATKYFLTQAAASALVL--FSsmtnaWFTGQ-------WDI------TQLSHPTSSLI----LTSAIAMKLGLVPF 96
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  97 HFWFPEVLQGSPLSTGLILSTIMKLPP-------ITLLYMTSSSLNPTLLTTLAILSVAIGGWMGLNQTQIRKILAFSSI 169
Cdd:CHL00049 234 HQWTPDVYEGSPTPVVAFLSVTSKVAAsalatriFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313

                        170       180       190
                 ....*....|....*....|....*....|.
gi 930157993 170 SHLGWMTIVII-------YNPKLTLLNFYLY 193
Cdd:CHL00049 314 GQIGYVIIGIIvgdsndgYASMITYMLFYIF 344
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
35-180 1.56e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 67.38  E-value: 1.56e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  35 PRSIEAATKYFLTQAAASALVLF-SSMTNAWFTGQwdiTQLSHPTSSLI-------------LTSAIAMKLGLVPFHFWF 100
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 101 PEVLQGSPLSTGLILSTIMKLP----PITLLYMTSSSLNP---TLLTTLAILSVAIGGWMGLNQTQIRKILAFSSISHLG 173
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....*..
gi 930157993 174 WMTIVII 180
Cdd:PRK02504 314 FVMIGLV 320
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 35-179 7.59e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.10  E-value: 7.59e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   35 PRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQW----DITQLSHPTSS-----LILTSAIAMKLGLVPFHFWFPEVLQ 105
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  106 GSPLSTGLILSTIM-KLPP-------ITLLYMTSSSLNPtLLTTLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWMTI 177
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTygflrfnLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 930157993  178 VI 179
Cdd:TIGR01972 311 GI 312
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-251 8.21e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 56.26  E-value: 8.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  18 LEINTLAILPLIS-KSHHPRSIEAATKYFLTQAAASALVLFSSmtnAWFTGQWDITQLSHPTSSL-------------IL 83
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  84 TSAIAMKLGLVPFHFWFPEVLQGSP--LSTGLILSTIMKLPPI--TLLYMTSSSLNPT----LLTTLAILSVAIGGWMGL 155
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 156 NQTQIRKILAFSSISHLGWM------TIVIIYNPKLTLLNFylyIMMTTAVFLTLNSIkVLKLSTLMTAW-----TKVPS 224
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYGE---IALAGGIYHIVNHA-LYKALLFLTAGaviyeTGTRN 382

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 930157993 225 LNAML-------------LLTLLSLAGLPPLTGFLPKWLI 251
Cdd:PRK08376 383 LNELGglartmpkttiafLIGAAAIVGLPPFNGFASKWLI 422
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 35-179 1.94e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 54.82  E-value: 1.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  35 PRSIEAATKYFLTQAAASALVLFSSMTNAWF----TGQWDITQLSHPTSS--------LILTSAIAMKLGLVPFHFWFPE 102
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 103 VLQGSPLSTGLILSTIM-----------KLPpitlLYMTSSSLNPTLLTTLAILSVAIGGWMGLNQTQIRKILAFSSISH 171
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlkmgaygllrfSLP----LFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                 ....*...
gi 930157993 172 LGWMTIVI 179
Cdd:PRK05846 313 MGFVTLGI 320
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-283 1.23e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 52.57  E-value: 1.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  18 LEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFS-SMTNAwFTGQWDITQLSHP--------TSSLILTSAIA 88
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGAlaenptvvTAFGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  89 MKLGLVPFHFWFPEVLQG-SPLSTGLILSTIMKLP--PITLLYMT-------SSSLNPTLLTTLAILSVAIGGWMGLNQT 158
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 159 QIRKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYI-----------MMTTAVFLTLNSIKVLKLSTLMTawtKVPSLNA 227
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgalfLAAGAIEVTYGTRRLSELSGLGR---RMPLTAA 370

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 930157993 228 MLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGMIPAATLISLLSLLSLFFYLRLAY 283
Cdd:PRK08375 371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 2-179 6.39e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.14  E-value: 6.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   2 TTITISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAA------SALVLFSSMTNAWFTGQWDITQL- 74
Cdd:PRK08676 115 ITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELa 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  75 ---SHPTSSLILTSAIAM------KLGLVPFHFWFPEVLQGSPLSTGLILS-TIMKLPPITLLYMTS-------SSLNPT 137
Cdd:PRK08676 195 ahaSLLSPSVLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSgTVLNIGIYGILRLSAllrqsgaAEQFSN 274

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 930157993 138 LLTTLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWMTIVI 179
Cdd:PRK08676 275 VLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 5-177 6.91e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 50.31  E-value: 6.91e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   5 TISSNHWIMAWTGLEINTLAILPLISKSHHPRSIEAATKYFLTQAAASALVLFSS----------MTNAWFTGQW-DITQ 73
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  74 LSHPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLSTGLILSTImkLPPITLL-----YM-TSSSLNP---- 136
Cdd:PRK06458 204 HASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGV--LLNVALYavlryYIlIDAAIGSdfpg 281

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 930157993 137 TLLTTLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWMTI 177
Cdd:PRK06458 282 RLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 8-179 2.50e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 48.61  E-value: 2.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993   8 SNHWIMAWTGLEINTLAILPLISKSHH-PRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQL-----SHPTSSL 81
Cdd:COG1009  130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  82 ILTSAIAM------KLGLVPFHFWFPEVLQG-SPLSTgLILSTIM---------KLPPITllymtssSLNPTLLTTLAIL 145
Cdd:COG1009  210 LTLILLLLllgafgKSAQFPLHFWLPDAMEGpTPVSA-LLHAATMvkagvyllaRLSPLF-------ALSPVWLTVVAII 281

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 930157993 146 SVA---IGGWMGLNQTQIRKILAFSSISHLGWMTIVI 179
Cdd:COG1009  282 GAItalFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 19-260 2.63e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 48.45  E-value: 2.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  19 EINTLAILPLISKSHHpRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDIT-------QLSHPTSSLI----LTSAI 87
Cdd:PRK08668 128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  88 AMKLGLVPFHFWFPEVLQGSP------LSTGL------ILSTIMKLPPITLLYMT-----SSSLNPTLLTTLAILSVAIG 150
Cdd:PRK08668 207 VAKAGIFPLHVWAPDAYSEAPqsfsavLSGQLsklgayGFLLVLYVLPGTKLFSEfgtyrGVPLFNYILAWLGNISIIVG 286

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 151 GWMGLNQTQIRKILAFSSISHLGWMTIVIIYNPKLT----LLNFYLYIMMTTAVFLTLNSI----KVLKLSTLMTAWTKV 222
Cdd:PRK08668 287 TLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEKM 366

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 930157993 223 PSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQGM 260
Cdd:PRK08668 367 PFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-179 3.40e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 48.38  E-value: 3.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAmKLGLVPFHFWFPEVLQG-SPLS----------TGLILstIMKLPPItllYMTSSSLNPTLLTtLAILSVAI 149
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAApTPVSaylhaaamvkAGIYL--VARLAPG---FADVPVWRPTVLV-LGLATMLL 280

                         90       100       110
                 ....*....|....*....|....*....|
gi 930157993 150 GGWMGLNQTQIRKILAFSSISHLGWMTIVI 179
Cdd:PRK12644 281 GGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
40-188 7.88e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.00  E-value: 7.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  40 AATKYFLTQAAASALVLFSSMTNAWFTGQWDI---TQLSH--PTSSLILTSA-----IAMKLGLVPFHFWFPE--VLQGS 107
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHtlPLSTQLLLLApilvgFGIKIPLVPFHTWLPDahVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 108 PLSTgLILSTIMKLPPITLL------YMTSSSLNPTLLTTLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWMTIVIIY 181
Cdd:PRK06473 238 PVSV-LLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAA 316


                 ....*..
gi 930157993 182 NPKLTLL 188
Cdd:PRK06473 317 ATPLSIL 323
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
77-253 2.55e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.33  E-value: 2.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  77 PTSSLILTSAIAMKLGLVPFhFWFPEVLQGSPLSTGLILSTIMKLPPI-------TLLYMTSSSLNPTLLTTLAILSVAI 149
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 150 GGWMGLNQTQIRKILAFSSISHLGWMTIVIIYNPKLTLLN--FYLY--IMMTTAVFLTLNSIKVL----KLSTLMTAWTK 221
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVhdMVVKTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 930157993 222 VPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 253
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 81-252 3.06e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.11  E-value: 3.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  81 LILTSAIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTIMKLPPITL------------LYMTSSSLNpTLLTTLAILSVA 148
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 149 IGGWMGLNQTQIRKILAFSSISHLGWMTIVIIYNPKLTLLNFYLYI----MMTTAVFLTLNSIK----VLKLSTLMTAWT 220
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371

                        170       180       190
                 ....*....|....*....|....*....|..
gi 930157993 221 KVPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 252
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 40-179 7.13e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.87  E-value: 7.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  40 AATKYFLTQAAASALVLFSSMTNAWFTGQ--WDITQLS--HPTSSLILTS------AIAMKLGLVPFHFWFPE------- 102
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGakSYPLALELLLyagfliAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 103 ----VLQGSPLSTG---LILSTIMKLPPITLLYmtssslnPTLLTTLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWM 175
Cdd:PRK12561 218 pvsmILAGVLLKMGgyaLIRFNVQMLPDAHVYF-------APALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290


                 ....
gi 930157993 176 TIVI 179
Cdd:PRK12561 291 LLGI 294
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 86-179 1.74e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 42.74  E-value: 1.74e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  86 AIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTI-MKLPPITLLYMT-------SSSLNPtLLTTLAILSVAIGGWMGLNQ 157
Cdd:MTH00204 218 SLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGIlLKLGGYGFLRFSwplfpaaSEYFAP-LIVMLSVIAVIYGSLTTCRQ 296

                         90       100
                 ....*....|....*....|..
gi 930157993 158 TQIRKILAFSSISHLGWMTIVI 179
Cdd:MTH00204 297 VDFKRLIAYSSVAHMGLVPLGL 318
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 40-173 1.86e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.80  E-value: 1.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  40 AATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSSLILT-----SAIAMKLGLVPFHFWFPEVLQGSPLSTGLI 114
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 930157993 115 LSTIM-KLPPITLLYMTSSSLNP-----TLLTTLAILSVAIGGWMGLNQTQIRKILAFSSISHLG 173
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 33-175 4.15e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 41.74  E-value: 4.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  33 HHPRSIEAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSS---------------LILTSAiAMKLGLVPFH 97
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitliLIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  98 FWFPEVLQGSPLSTGLILSTIMKLPPITLLYMTSSSLNPT-----LLTTLAILSVAIGGWMGLNQTQIRKILAFSSISHL 172
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314


                 ...
gi 930157993 173 GWM 175
Cdd:PRK12649 315 AYL 317
PRK12650 PRK12650
DUF4040 family protein;
83-179 7.33e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.18  E-value: 7.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  83 LTSAIAM--------KLGLVPFHFWFPEVLQG-SPLSTGLILSTIMKlPPITLLYMTSSSL--NPT---LLTTLAILSVA 148
Cdd:PRK12650 206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVK-AGIYLLLRFSPVFhdVAVwnwLLIIVGMITAL 284

                         90       100       110
                 ....*....|....*....|....*....|.
gi 930157993 149 IGGWMGLNQTQIRKILAFSSISHLGWMTIVI 179
Cdd:PRK12650 285 MGAVFAVQKTDLKKLTAYSTVSQLGWIVATI 315
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 94-251 8.21e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 40.67  E-value: 8.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  94 VPFHFWFPEVLQG-SPLSTGLILSTIMKLPpITLLymtsSSLNP---------TLLTTLAILSVAIGGWMGLNQTQIRKI 163
Cdd:PRK12647 212 FPFHFWLPNAMEApTPVSAYLHSATMVKAG-IYLL----ARLNPvlggtplwqTILPLFGGLTMLTGALLAVRQTDLKLI 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 164 LAFSSISHLGWMTIVIIYNPKLTLLNFYLYIMMTT----AVFLTLNSIK-------VLKLSTLmtaWTKVPSLNAMLLLT 232
Cdd:PRK12647 287 LAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSlykgALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLA 363

                        170
                 ....*....|....*....
gi 930157993 233 LLSLAGLPPLTGFLPKWLI 251
Cdd:PRK12647 364 ALSMAGLPPLFGFLAKELI 382
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
40-188 8.66e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.47  E-value: 8.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  40 AATKYFLTQAAASALVLFSSMTNAWFTGQWD------ITQ-LSHPTSSLILTSAI---AMKLGLVPFHFWFPEV-LQGSP 108
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 109 LSTGLILSTIMKLPPITLLYM-------TSSSLNPTLLTTLAIlSVAIGGWMGLNQTQIRKILAFSSISHLGWMTIVIIY 181
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316


                 ....*..
gi 930157993 182 NPKLTLL 188
Cdd:PRK07363 317 GTQLSLL 323
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 86-180 1.16e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  86 AIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTI-MKLPPITLLYMT-------SSSLNPTLLtTLAILSVAIGGWMGLNQ 157
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSwpilplgAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|...
gi 930157993 158 TQIRKILAFSSISHLGWMTIVII 180
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLV 340
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 86-179 3.16e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.88  E-value: 3.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  86 AIAMKLGLVPFHFWFPEVLQGSPLSTGLILSTI-MKLP-------PITLLYMTSSSLNPtLLTTLAILSVAIGGWMGLNQ 157
Cdd:MTH00217 215 SLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVlLKLGgygfirfSWPLLPEASEYFSP-LIQTLSLLAIIYGSLTTCRQ 293

                         90       100
                 ....*....|....*....|..
gi 930157993 158 TQIRKILAFSSISHLGWMTIVI 179
Cdd:MTH00217 294 VDLKRIIAYSSVAHMGLVTLGI 315
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 40-179 3.85e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 38.53  E-value: 3.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  40 AATKYFLTQAAASALVLFSSMTNAWFTG--QWDITQLSHPTSSLI--------LTSAIAMKLGLVPFHFWFPEVLQGSPL 109
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAAKDFGLGfqllcyagLLIAYGVKLPIVPLHTWLPDAHGEATA 245

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 930157993 110 STGLILSTIM-KLPPITLLYMTSSSLNPT------LLTTLAILSVAIGGWMGLNQTQIRKILAFSSISHLGWMTIVI 179
Cdd:PRK02546 246 PVHMLLAGILlKMGGYALLRMNAGMLPDAhaqfapLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
39-175 4.66e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 38.47  E-value: 4.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993  39 EAATKYFLTQAAASALVLFSSMTNAWFTGQWDITQLSHPTSSLILTSAIAMKLGLV----------------PFHFWFPE 102
Cdd:PRK07376 173 DAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWLPD 252

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 930157993 103 VLQG-SPLStGLILSTIMKLPPITL---LYMTSSSLnPTLLTTLAI---LSVAIGGWMGLNQTQIRKILAFSSISHLGWM 175
Cdd:PRK07376 253 AMEGpTPIS-ALIHAATMVAAGVFLvarMYPVFEQF-PAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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