|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02328 |
PLN02328 |
lysine-specific histone demethylase 1 homolog |
165-807 |
9.90e-128 |
|
lysine-specific histone demethylase 1 homolog
Pssm-ID: 215187 [Multi-domain] Cd Length: 808 Bit Score: 402.06 E-value: 9.90e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 165 LPHDRMTSQE-AACFPDIISGPQQTQkvFLYIRNRTLQLWLDNPKVQLTFENTLQQLEAPYNSdsvLVHRIHCYLERHGL 243
Cdd:PLN02328 142 FPVDSLTEEEiEANVVSTIGGTEQAN--YIVVRNHILARWRSNVSNWLTRDHALESIRAEHKN---LVDSAYNFLLEHGY 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 244 INFGVYKRLKPLPTK-----KTGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFR-KGNYV---ADLGAM 314
Cdd:PLN02328 217 INFGVAPVIKEAQLRsfegvEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKmKGDGVvaaADLGGS 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 315 VVTGLGGNPMAVISKQVNMELAKIKQKCPLYEANGQGVPKEKDEMVEQEFNRLLEATSYLSHQLdfnILNNKPV--SLGQ 392
Cdd:PLN02328 297 VLTGINGNPLGVLARQLGLPLHKVRDICPLYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAM---IEEVKSVdvNLGT 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 393 ALEVViqlqeKHVkdeqiehwkkivktqdelkellnkmvnvkekikelhqqYKeasevkpprditaeflvkskhrdltal 472
Cdd:PLN02328 374 ALEAF-----RHV--------------------------------------YK--------------------------- 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 473 ckeydqLAESQgkleeklqeleanppsdvylssRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNG 552
Cdd:PLN02328 384 ------VAEDP----------------------QERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGG 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 553 YSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRstsqtfiYKCDAVLCTLPLGVLKQQppAVQFVPPLPEWKTSA 632
Cdd:PLN02328 436 NDTFVRELAKDLPIFYERTVESIRYGVDGVIVYAGGQE-------FHGDMVLCTVPLGVLKKG--SIEFYPELPQRKKDA 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 633 VQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFW---NLYKAPILLALVAGEAAGIMENISDDVIVGRC 709
Cdd:PLN02328 507 IQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYsysSVSGGPLLIALVAGDAAVKFETLSPVESVKRV 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 710 LAILKGIFGSS--AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGpaipgapqpipRLFFAGEHTIR 787
Cdd:PLN02328 587 LQILRGIFHPKgiVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDG-----------RVFFAGEATNK 655
|
650 660
....*....|....*....|
gi 929984459 788 NYPATVHGALLSGLREAGRI 807
Cdd:PLN02328 656 QYPATMHGAFLSGMREAANI 675
|
|
| PLN03000 |
PLN03000 |
amine oxidase |
160-808 |
1.09e-124 |
|
amine oxidase
Pssm-ID: 178578 [Multi-domain] Cd Length: 881 Bit Score: 396.31 E-value: 1.09e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 160 AFQSRLPHDRMTSQE--AACFPdIISGPQQTQkvFLYIRNRTLQLWLDNPKVQLTFENTLQQLeaPYNSdSVLVHRIHCY 237
Cdd:PLN03000 86 ALTAGFPADSLTEEEieFGVVP-IVGGIEQVN--YILIRNHIISKWRENISSWVTKEMFLGSI--PKHC-SSLLDSAYNY 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 238 LERHGLINFGVYKRLK-PLPTKKT-GKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFR-KGNYV---ADL 311
Cdd:PLN03000 160 LVTHGYINFGIAQAIKdKFPAQSSkSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKmEANRVgaaADL 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 312 GAMVVTGLGGNPMAVISKQVNMELAKIKQKCPLYEANGQGVPKEKDEMVEQEFNRLLEATSYLsHQLDFNIlnNKPVSLG 391
Cdd:PLN03000 240 GGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPVDPDVDLKVEVAFNQLLDKASKL-RQLMGDV--SMDVSLG 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 392 QALEVVIQLQEKHVKDEQIehwkkivktqdelkellnkmvnvkekikelhqqykeasevkpprditaeflvkskhrdlta 471
Cdd:PLN03000 317 AALETFRQVSGNDVATEEM------------------------------------------------------------- 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 472 lckeydqlaesqgkleeklqeleanppsdvylssrdrQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRN 551
Cdd:PLN03000 336 -------------------------------------GLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPG 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 552 GYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTrstsqtfIYKCDAVLCTLPLGVLKQQppAVQFVPPLPEWKTS 631
Cdd:PLN03000 379 GNGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGNQ-------VYEGDMVLCTVPLGVLKNG--SIKFVPELPQRKLD 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 632 AVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPILLALVAGEAAGIMENISDDVIVGR 708
Cdd:PLN03000 450 CIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSyapVAGGPLLIALVAGEAAHKFETMPPTDAVTR 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 709 CLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGpaipgapqpipRLFFAGEHTI 786
Cdd:PLN03000 530 VLHILRGIYEPQGinVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDG-----------RLFFAGEATT 598
|
650 660
....*....|....*....|..
gi 929984459 787 RNYPATVHGALLSGLREAGRIA 808
Cdd:PLN03000 599 RRYPATMHGAFVTGLREAANMA 620
|
|
| PLN02529 |
PLN02529 |
lysine-specific histone demethylase 1 |
189-807 |
3.99e-119 |
|
lysine-specific histone demethylase 1
Pssm-ID: 178144 [Multi-domain] Cd Length: 738 Bit Score: 377.31 E-value: 3.99e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 189 QKVFLYIRNRTLQLWLDNPKVQLTFENTLQQLEAPYNSdsvLVHRIHCYLERHGLINFGVYKRL-KPLPTKKT-GKVIII 266
Cdd:PLN02529 90 QNDYIVVRNHILARWRSNVGIWLSKGQIKETVSSEYEH---LISAAYDFLLYNGYINFGVSPSFaSPIPEEGTeGSVIIV 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 267 GSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVAT---FRKGNYVA-DLGAMVVTGLGGNPMAVISKQVNMELAKIKQKC 342
Cdd:PLN02529 167 GAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTqkmGRKGQFAAvDLGGSVITGIHANPLGVLARQLSIPLHKVRDNC 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 343 PLYEANGQGVPKEKDEMVEQEFNRLLeatsylshqldfnilnnkpvslgqalevviqlqekhvkdeqiehwkkivktqDE 422
Cdd:PLN02529 247 PLYKPDGALVDKEIDSNIEFIFNKLL----------------------------------------------------DK 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 423 LKELLNKMVNVKEKIkelhqqykeasevkpprditaeflvkskhrdltalckeydqlaeSQGKLEEKLQELEAnppsdVY 502
Cdd:PLN02529 275 VTELRQIMGGFANDI--------------------------------------------SLGSVLERLRQLYG-----VA 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 503 LSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGC 582
Cdd:PLN02529 306 RSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCEGVPIFYGKTVDTIKYGNDGV 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 583 EVIAvntrsTSQtfIYKCDAVLCTLPLGVLKQQppAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGH 662
Cdd:PLN02529 386 EVIA-----GSQ--VFQADMVLCTVPLGVLKKR--TIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGC 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 663 VGSTTASRGELFLFWNLYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADP 737
Cdd:PLN02529 457 LNESSNKRGEFFLFYGYHTvsgGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGinVPDPIQTICTRWGSDP 536
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 738 WARGSYSYVAAGSSGNDYDLMAQPITpgpaipgapqpiPRLFFAGEHTIRNYPATVHGALLSGLREAGRI 807
Cdd:PLN02529 537 LSYGSYSHVRVQSSGSDYDILAESVS------------GRLFFAGEATTRQYPATMHGAFLSGLREASRI 594
|
|
| PLN02976 |
PLN02976 |
amine oxidase |
262-809 |
3.01e-115 |
|
amine oxidase
Pssm-ID: 215527 [Multi-domain] Cd Length: 1713 Bit Score: 384.99 E-value: 3.01e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKGNYV-ADLGAMVVTGLGGN--------PMAVISKQVN 332
Cdd:PLN02976 695 KIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVpVDLGASIITGVEADvaterrpdPSSLICAQLG 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 333 MELAKIKQKCPLYE-ANGQGVPKEKDEMVEQEFNRLLEatsylshqldfnilnnkpvslgqalEVVIQLQEKHvkdeqiE 411
Cdd:PLN02976 775 LELTVLNSDCPLYDvVTGEKVPADLDEALEAEYNSLLD-------------------------DMVLLVAQKG------E 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 412 HWKKIvKTQDELKELL--NKMVNVKEKIKElhqqykeasevkpprditaeflvkskhrdlTALCKEYDQLAESQgKLEEK 489
Cdd:PLN02976 824 HAMKM-SLEDGLEYALkrRRMPRPGVDIDE------------------------------TELGNAADDLYDSA-STGVD 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 490 LQELEANPPSDVyLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFE-FTGSHLTVRNGYSCVPVALAEGLDIKL 568
Cdd:PLN02976 872 GGHCEKESKEDV-LSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGgFGGAHCMIKGGYSNVVESLAEGLDIHL 950
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 569 NTAVRQVRY-------TASGCEVIAVNTRSTSQtfiYKCDAVLCTLPLGVLKQQppAVQFVPPLPEWKTSAVQRMGFGNL 641
Cdd:PLN02976 951 NHVVTDVSYgskdagaSGSSRKKVKVSTSNGSE---FLGDAVLITVPLGCLKAE--TIKFSPPLPDWKYSSIQRLGFGVL 1025
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 642 NKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFG 718
Cdd:PLN02976 1026 NKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKtvgAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFG 1105
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 719 SSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGpaipgapqpiprLFFAGEHTIRNYPATVHGALL 798
Cdd:PLN02976 1106 EALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENC------------LFFAGEATCKEHPDTVGGAMM 1173
|
570
....*....|.
gi 929984459 799 SGLREAGRIAD 809
Cdd:PLN02976 1174 SGLREAVRIID 1184
|
|
| Amino_oxidase |
pfam01593 |
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ... |
270-807 |
2.84e-99 |
|
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Pssm-ID: 396255 [Multi-domain] Cd Length: 446 Bit Score: 315.97 E-value: 2.84e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 270 VAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKGNYVADLGAMVVTGLGgNPMAVISKQVNMELakiKQKCPLYEA-- 347
Cdd:pfam01593 1 LAGLAAARELLRAGHDVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHGAQ-PPLLALLKELGLED---RLVLPDPAPfy 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 348 -----NGQGVPKEKdEMVEQEFNRLLEAtsylshqldfnilnnkpvslgqalevviqlqekhvkdeqiehwkkivktqde 422
Cdd:pfam01593 77 tvlfaGGRRYPGDF-RRVPAGWEGLLEF---------------------------------------------------- 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 423 lkellNKMVNVKEKIKELHqqykeasevkpprditaeFLVKSKHRDLTALCKeydqlaesqGKLEEKLQELEANPPSDVY 502
Cdd:pfam01593 104 -----GRLLSIPEKLRLGL------------------AALASDALDEFDLDD---------FSLAESLLFLGRRGPGDVE 151
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 503 LSsrDRQILDWHFANLEFANAT-----PLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAE---GLDIKLNTAVRQ 574
Cdd:pfam01593 152 VW--DRLIDPELFAALPFASGAfagdpSELSAGLALPLLWALLGEGGSLLLPRGGLGALPDALAAqllGGDVRLNTRVRS 229
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 575 VRYTASGCEVIAVNTRStsqtfiYKCDAVLCTLPLGVLKqqppAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWD 654
Cdd:pfam01593 230 IDREGDGVTVTLTDGEV------IEADAVIVTVPLGVLK----RILFTPPLPPEKARAIRNLGYGPVNKVHLEFDRKFWP 299
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 655 PSvNLFGHVGSTTASRGELFLF--WNLY----KAPILLALV-AGEAAGIMENISDDVIVGRCLAILKGIFGSsAVPQPKE 727
Cdd:pfam01593 300 DL-GLLGLLSELLTGLGTAFSWltFPNRappgKGLLLLVYVgPGDRARELEGLSDEELLQAVLRDLRKLFGE-EAPEPLR 377
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 728 TVVSRWRADPWARGSYSYVAAGSSGNDYDlmaqpitpgpaiPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRI 807
Cdd:pfam01593 378 VLVSDWHTDPWPRGSYSLPQYGPGHDDYR------------PLARTPDPGLFFAGEHTSTGYPGTVEGAIESGRRAARAV 445
|
|
| YobN |
COG1231 |
Monoamine oxidase [Amino acid transport and metabolism]; |
262-813 |
3.87e-75 |
|
Monoamine oxidase [Amino acid transport and metabolism];
Pssm-ID: 440844 [Multi-domain] Cd Length: 440 Bit Score: 251.38 E-value: 3.87e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKG--NYVADLGAMVVTGLGGNPMAVIsKQVNMELakik 339
Cdd:COG1231 9 DVVIVGAGLAGLAAARELRKAGLDVTVLEARDRVGGRVWTLRFGddGLYAELGAMRIPPSHTNLLALA-RELGLPL---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 340 qkCPLYEANGQGVpkekdemveqefnrlleatsylshqLDFNilnNKPVSLGQalevviqlqekhvkdeqiehwkkIVKT 419
Cdd:COG1231 84 --EPFPNENGNAL-------------------------LYLG---GKRVRAGE-----------------------IAAD 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 420 QDELKELLNKMVnvkekikelhqqykeasevkppRDITAEFlvkskhRDLTALCKEYDQlaesqgkleEKLQE-LEANPp 498
Cdd:COG1231 111 LRGVAELLAKLL----------------------RALAAAL------DPWAHPAAELDR---------ESLAEwLRRNG- 152
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 499 sdvyLSSRDRQILDwhfANLEFANATPLSTLSLKHWDQD-DDFEFTGSHLTVRNGYSCVPVALAEGL--DIKLNTAVRQV 575
Cdd:COG1231 153 ----ASPSARRLLG---LLGAGEYGADPDELSLLDLLRYaASAGGGAQQFRIVGGMDQLPRALAAELgdRIRLGAPVTRI 225
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 576 RYTASGCEVIavntrsTSQTFIYKCDAVLCTLPLGVLKQqppaVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDP 655
Cdd:COG1231 226 RQDGDGVTVT------TDDGGTVRADAVIVTVPPSVLRR----IEFDPPLPAAKRAAIQRLPYGAAIKVFLQFDRPFWEE 295
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 656 SvnlfGHVGSTTASRGELFL-FWNLY----KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAvPQPKETVV 730
Cdd:COG1231 296 D----GLYGGISLTDLPIRQtWYPSNgpdgGAGVLLGYVGGDDARALAALSPEERVAAALEQLARIFGVYA-AEPVDYVS 370
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 731 SRWRADPWARGSYSYVAAGSSGNDYDLMAQPItpgpaipgapqpiPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQ 810
Cdd:COG1231 371 TDWGRDPWSRGAYAAAPPGQLTAAGPALAEPD-------------GRIHFAGEHTSDEWPGWVEGALESGERAAAEILAR 437
|
...
gi 929984459 811 FLG 813
Cdd:COG1231 438 LGG 440
|
|
| PLN02268 |
PLN02268 |
probable polyamine oxidase |
263-804 |
1.06e-71 |
|
probable polyamine oxidase
Pssm-ID: 177909 [Multi-domain] Cd Length: 435 Bit Score: 242.29 E-value: 1.06e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 263 VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVISKQVNMELAKIK-- 339
Cdd:PLN02268 3 VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNeNPLAPLIGRLGLPLYRTSgd 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 340 ---------QKCPLYEANGQGVPKEKDEMVEQEFNRLLEATsylshqldfnilnnkpvslgqalevviqlqeKHVKDEQi 410
Cdd:PLN02268 83 nsvlydhdlESYALFDMDGNQVPQELVTKVGETFERILEET-------------------------------EKVRDEH- 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 411 ehwkkivkTQDelkellnkmVNVKEKIKelhqqykeasevkpprditaefLVKSKHRDLtalckeydqlaesqgkleeKL 490
Cdd:PLN02268 131 --------EED---------MSLLQAIS----------------------IVLERHPEL-------------------RL 152
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 491 QELeanppsdvylssrDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEftGSHLTVRNGYSCVPVALAEGLDIKLNT 570
Cdd:PLN02268 153 EGL-------------AHEVLQWYLCRMEGWFAADADTISLKSWDQEELLE--GGHGLMVRGYDPVINTLAKGLDIRLNH 217
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 571 AVRQVRYTASGCEViavnTRSTSQTFIykCDAVLCTLPLGVLKQQppAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDR 650
Cdd:PLN02268 218 RVTKIVRRYNGVKV----TVEDGTTFV--ADAAIIAVPLGVLKAN--IIKFEPELPEWKEEAISDLGVGIENKIALHFDS 289
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 651 VFWdPSVNLFGHVGSTTASRGelfLFWNLYKA---PILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSavPQPKE 727
Cdd:PLN02268 290 VFW-PNVEFLGVVAPTSYGCS---YFLNLHKAtghPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDA--TEPVQ 363
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 929984459 728 TVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITpgpaipgapqpipRLFFAGEHTIRNYPATVHGALLSGLREA 804
Cdd:PLN02268 364 YLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVD-------------NLFFAGEATSSDFPGSVHGAYSTGVMAA 427
|
|
| PLN02568 |
PLN02568 |
polyamine oxidase |
259-807 |
2.35e-44 |
|
polyamine oxidase
Pssm-ID: 215308 [Multi-domain] Cd Length: 539 Bit Score: 168.47 E-value: 2.35e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 259 KTGKVIIIGSGVAGLAAARQLQSFG-----MDVTVLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVISKQVNM 333
Cdd:PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSaandmFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 334 ELAKIKQKCPlyeangQGVPKEKDEMVEQEFN---RLLEATSYLSHQLdFNILNNKPVSLGQALEVviqlqekhvkdeqi 410
Cdd:PLN02568 84 LESDEPWECM------DGFPDRPKTVAEGGFEvdpSIVESISTLFRGL-MDDAQGKLIEPSEVDEV-------------- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 411 ehwkkivktqdelkellnkmvnvkekikELHQQYKEASEVKPPRDITA--EFLvKSKHRDLTALCKEYDQLAESQGKLEE 488
Cdd:PLN02568 143 ----------------------------DFVKLAAKAARVCESGGGGSvgSFL-RRGLDAYWDSVSADEQIKGYGGWSRK 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 489 KLQEleanppsdvylssrdrQILDWHfANLE--FANATPLSTLSLkhwDQDDDF-EFTGSHLTVRNGYSCVPVALAEGLD 565
Cdd:PLN02568 194 LLEE----------------AIFTMH-ENTQrtYTSADDLSTLDL---AAESEYrMFPGEEITIAKGYLSVIEALASVLP 253
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 566 ---IKLNTAVRQVRYTAsgcEVIAVNTRSTSqtfIYKCDAVLCTLPLGVLKQQ--PPAVQFVPPLPEWKTSAVQRMGFGN 640
Cdd:PLN02568 254 pgtIQLGRKVTRIEWQD---EPVKLHFADGS---TMTADHVIVTVSLGVLKAGigEDSGLFSPPLPDFKTDAISRLGFGV 327
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 641 LNKVVLCF----DRVFWD----PSVNLFGHvGSTTASRGELFLFW-----NLY----KAPILLALVAGEAAGIMENISDD 703
Cdd:PLN02568 328 VNKLFVELsprpDGSPEDvakfPFLQMAFH-RSDSEARHDKIPWWmrrtaSICpihkNSSVLLSWFAGKEALELEKLSDE 406
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 704 VIV-------------------GRCLAILKGIFGSSAVPQPKETVV--SRWRADPWARGSYSYVAAGSSGNDYDLMAQPI 762
Cdd:PLN02568 407 EIIrgvqttlssflkrrvaglgSQSHPLCNGGASSNDGSRWKFVKVlkSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPL 486
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 929984459 763 TPGPAIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRI 807
Cdd:PLN02568 487 PRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRL 531
|
|
| PLN02676 |
PLN02676 |
polyamine oxidase |
258-804 |
3.50e-37 |
|
polyamine oxidase
Pssm-ID: 215362 [Multi-domain] Cd Length: 487 Bit Score: 146.40 E-value: 3.50e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 258 KKTGKVIIIGSGVAGLAAARQLQSFGM-DVTVLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGnpmavisKQVNmela 336
Cdd:PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIeDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGG-------PESN---- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 337 kikqkcPLYEangqgvpkekdeMVEQefnrlLEATSYLShqlDF-NILNNkpvslgqalevvIQLQEKHVKDEQIehwkk 415
Cdd:PLN02676 93 ------PIWE------------LANK-----LKLRTFYS---DFdNLSSN------------IYKQDGGLYPKKV----- 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 416 ivkTQDELKellnKMVNVKEKIKELhqqykeasevkpprditAEFLVKSKHRDLTALckeydqlaesqgkleeKLQELEA 495
Cdd:PLN02676 130 ---VQKSMK----VADASDEFGENL-----------------SISLSAKKAVDISIL----------------TAQRLFG 169
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 496 NPPSdvylsSRDRQILDWHFANLEFA---------NATPLSTLSlkhwDQDDDFEFTGShltvRNGYSCVPVALAEG--- 563
Cdd:PLN02676 170 QVPK-----TPLEMVIDYYNYDYEFAepprvtslkNTEPNPTFV----DFGEDEYFVAD----PRGYESLVYYLAEQfls 236
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 564 ------LD--IKLNTAVRQVRYTASGcevIAVNTRSTSqtfIYKCDAVLCTLPLGVLkqQPPAVQFVPPLPEWKTSAVQR 635
Cdd:PLN02676 237 tksgkiTDprLKLNKVVREISYSKNG---VTVKTEDGS---VYRAKYVIVSVSLGVL--QSDLIKFKPPLPDWKIEAIYQ 308
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 636 MGFGNLNKVVLCFDRVFWdPSVN-----LFGHVgsttaSRGeLFLFW----NLYK-APILLALVAGEAAGIMENISDDVI 705
Cdd:PLN02676 309 FDMAVYTKIFLKFPYKFW-PSGPgteffLYAHE-----RRG-YYPFWqhleNEYPgSNVLFVTVTDEESRRIEQQPDSET 381
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 706 VGRCLAILKGIFGSSaVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITpgpaipgapqpipRLFFAGEHT 785
Cdd:PLN02676 382 KAEIMEVLRKMFGPN-IPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVG-------------RVYFTGEHT 447
|
570
....*....|....*....
gi 929984459 786 IRNYPATVHGALLSGLREA 804
Cdd:PLN02676 448 SEKYNGYVHGAYLAGIDTA 466
|
|
| SWIRM |
pfam04433 |
SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid ... |
168-246 |
7.52e-24 |
|
SWIRM domain; This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA.
Pssm-ID: 461307 [Multi-domain] Cd Length: 78 Bit Score: 95.71 E-value: 7.52e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 929984459 168 DRMTSQEAACFPDIISGPQQTQKVFLYIRNRTLQLWLDNPKVQLTFENTLQQLEapynSDSVLVHRIHCYLERHGLINF 246
Cdd:pfam04433 4 DKLHPIEKRLLPEFFNGKSKTPEVYLEIRNFILNLWRENPKEYLTKTDARRALK----GDVNLISRIHEFLERWGLINF 78
|
|
| HemY |
COG1232 |
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ... |
262-313 |
5.74e-15 |
|
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis
Pssm-ID: 440845 [Multi-domain] Cd Length: 443 Bit Score: 77.95 E-value: 5.74e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKGNYVADLGA 313
Cdd:COG1232 3 RVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGGLIRTVEVDGFRIDRGP 54
|
|
| COG1233 |
COG1233 |
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ... |
262-317 |
1.05e-14 |
|
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 440846 [Multi-domain] Cd Length: 491 Bit Score: 77.58 E-value: 1.05e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKGNYVADLGAMVVT 317
Cdd:COG1233 5 DVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRARTFERPGFRFDVGPSVLT 60
|
|
| NAD_binding_8 |
pfam13450 |
NAD(P)-binding Rossmann-like domain; |
265-324 |
1.60e-14 |
|
NAD(P)-binding Rossmann-like domain;
Pssm-ID: 433218 [Multi-domain] Cd Length: 67 Bit Score: 68.71 E-value: 1.60e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 265 IIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPM 324
Cdd:pfam13450 1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAYSYRVPGYVFDYGAHIFHGSDEPNV 60
|
|
| COG3380 |
COG3380 |
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]; |
262-313 |
3.06e-14 |
|
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
Pssm-ID: 442607 [Multi-domain] Cd Length: 331 Bit Score: 74.91 E-value: 3.06e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKGNYVADLGA 313
Cdd:COG3380 5 DIAIIGAGIAGLAAARALQDAGHEVTVFEKSRGVGGRMATRRLDGGRFDHGA 56
|
|
| crtI_fam |
TIGR02734 |
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ... |
263-317 |
1.46e-11 |
|
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 274273 [Multi-domain] Cd Length: 495 Bit Score: 67.69 E-value: 1.46e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 929984459 263 VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKGNYVADLGAMVVT 317
Cdd:TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVIT 55
|
|
| GltD |
COG0493 |
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ... |
225-297 |
5.46e-11 |
|
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis
Pssm-ID: 440259 [Multi-domain] Cd Length: 434 Bit Score: 65.54 E-value: 5.46e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 929984459 225 NSDSVLVHRIHCYLERHGlinFGVYKRLKPLPTKKTGK-VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:COG0493 88 VDEPVAIGALERFIADKA---FEEGWVKPPPPAPRTGKkVAVVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
|
|
| COG3349 |
COG3349 |
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ... |
260-312 |
1.68e-10 |
|
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];
Pssm-ID: 442577 [Multi-domain] Cd Length: 445 Bit Score: 64.11 E-value: 1.68e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 929984459 260 TGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRkgnyVADLG 312
Cdd:COG3349 3 PPRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGGRARSFP----DPDTG 51
|
|
| gltD |
PRK12810 |
glutamate synthase subunit beta; Reviewed |
253-297 |
3.72e-10 |
|
glutamate synthase subunit beta; Reviewed
Pssm-ID: 237213 [Multi-domain] Cd Length: 471 Bit Score: 63.26 E-value: 3.72e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 929984459 253 KPL-PTKKTGK-VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:PRK12810 134 KPDpPVKRTGKkVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
|
|
| PRK07233 |
PRK07233 |
hypothetical protein; Provisional |
262-307 |
6.15e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 235977 [Multi-domain] Cd Length: 434 Bit Score: 62.21 E-value: 6.15e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKGNY 307
Cdd:PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGL 46
|
|
| PRK11883 |
PRK11883 |
protoporphyrinogen oxidase; Reviewed |
262-313 |
2.10e-09 |
|
protoporphyrinogen oxidase; Reviewed
Pssm-ID: 237009 [Multi-domain] Cd Length: 451 Bit Score: 60.63 E-value: 2.10e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFG--MDVTVLEARDRVGGRVATFRKGNYVADLGA 313
Cdd:PRK11883 2 KVAIIGGGITGLSAAYRLHKKGpdADITLLEASDRLGGKIQTVRKDGFPIELGP 55
|
|
| CzcO |
COG2072 |
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ... |
263-307 |
3.85e-09 |
|
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];
Pssm-ID: 441675 [Multi-domain] Cd Length: 414 Bit Score: 59.49 E-value: 3.85e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 929984459 263 VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGrvaTFRKGNY 307
Cdd:COG2072 9 VVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGG---TWRDNRY 50
|
|
| PRK11749 |
PRK11749 |
dihydropyrimidine dehydrogenase subunit A; Provisional |
238-297 |
6.24e-09 |
|
dihydropyrimidine dehydrogenase subunit A; Provisional
Pssm-ID: 236967 [Multi-domain] Cd Length: 457 Bit Score: 59.04 E-value: 6.24e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 929984459 238 LERHG---LINFGVYKRLKPLPTKKtgKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:PRK11749 117 LERYItdwAMETGWVLFKRAPKTGK--KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
|
|
| PLN02576 |
PLN02576 |
protoporphyrinogen oxidase |
263-313 |
3.46e-08 |
|
protoporphyrinogen oxidase
Pssm-ID: 215314 [Multi-domain] Cd Length: 496 Bit Score: 56.94 E-value: 3.46e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 929984459 263 VIIIGSGVAGLAAARQLQS-FGMDVTVLEARDRVGGRVATFRKGNYVADLGA 313
Cdd:PLN02576 15 VAVVGAGVSGLAAAYALASkHGVNVLVTEARDRVGGNITSVSEDGFIWEEGP 66
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
262-303 |
1.55e-07 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 54.33 E-value: 1.55e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRvATFR 303
Cdd:pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSG-ASGR 41
|
|
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
262-303 |
4.65e-07 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 52.99 E-value: 4.65e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEaRDRVGGRvATFR 303
Cdd:COG0665 4 DVVVIGGGIAGLSTAYHLARRGLDVTVLE-RGRPGSG-ASGR 43
|
|
| Ppro0129 |
COG2907 |
Predicted flavin-containing amine oxidase [General function prediction only]; |
262-301 |
5.91e-07 |
|
Predicted flavin-containing amine oxidase [General function prediction only];
Pssm-ID: 442151 [Multi-domain] Cd Length: 423 Bit Score: 52.81 E-value: 5.91e-07
10 20 30 40
....*....|....*....|....*....|....*....|
gi 929984459 262 KVIIIGSGVAGLAAARQLQSfGMDVTVLEARDRVGGRVAT 301
Cdd:COG2907 5 RIAVIGSGISGLTAAWLLSR-RHDVTLFEANDRLGGHTHT 43
|
|
| PRK12771 |
PRK12771 |
putative glutamate synthase (NADPH) small subunit; Provisional |
254-297 |
6.64e-07 |
|
putative glutamate synthase (NADPH) small subunit; Provisional
Pssm-ID: 237198 [Multi-domain] Cd Length: 564 Bit Score: 52.96 E-value: 6.64e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 929984459 254 PLPTKKTGK-VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:PRK12771 130 PAPAPDTGKrVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
|
|
| HdrA |
COG1148 |
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion]; |
243-304 |
8.39e-07 |
|
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
Pssm-ID: 440762 [Multi-domain] Cd Length: 563 Bit Score: 52.55 E-value: 8.39e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 929984459 243 LINFGVYK--RLKPLPTKK---TGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRK 304
Cdd:COG1148 118 LVRMAVAKakLLEPLEPIKvpvNKRALVIGGGIAGMTAALELAEQGYEVYLVEKEPELGGRAAQLHK 184
|
|
| PRK07208 |
PRK07208 |
hypothetical protein; Provisional |
262-312 |
1.38e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 235967 [Multi-domain] Cd Length: 479 Bit Score: 51.81 E-value: 1.38e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG--RVATFrKGNYVaDLG 312
Cdd:PRK07208 6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGisRTVTY-KGNRF-DIG 56
|
|
| PRK12775 |
PRK12775 |
putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin ... |
250-297 |
1.63e-06 |
|
putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Pssm-ID: 183738 [Multi-domain] Cd Length: 1006 Bit Score: 51.87 E-value: 1.63e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 929984459 250 KRLKPLP-TKKTGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:PRK12775 419 KPVKPPRfSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGG 467
|
|
| PRK12814 |
PRK12814 |
putative NADPH-dependent glutamate synthase small subunit; Provisional |
251-297 |
2.82e-06 |
|
putative NADPH-dependent glutamate synthase small subunit; Provisional
Pssm-ID: 139246 [Multi-domain] Cd Length: 652 Bit Score: 50.88 E-value: 2.82e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 929984459 251 RLKPLPTKKTGK-VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:PRK12814 183 RYIPERAPKSGKkVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230
|
|
| UbiH |
COG0654 |
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ... |
262-298 |
4.17e-06 |
|
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 49.55 E-value: 4.17e-06
10 20 30
....*....|....*....|....*....|....*..
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGR 298
Cdd:COG0654 5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPD 41
|
|
| TrxB |
COG0492 |
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; |
262-301 |
4.19e-06 |
|
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440258 [Multi-domain] Cd Length: 305 Bit Score: 49.35 E-value: 4.19e-06
10 20 30 40
....*....|....*....|....*....|....*....|
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEaRDRVGGRVAT 301
Cdd:COG0492 2 DVVIIGAGPAGLTAAIYAARAGLKTLVIE-GGEPGGQLAT 40
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
385-495 |
4.56e-06 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 49.14 E-value: 4.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 385 NKPVSLGQALEVVIQLQEKhvkDEQIEHWKKIVKTQDELKELLNKMVNVKEKIKELHQQ------------------YKE 446
Cdd:COG1340 127 TEVLSPEEEKELVEKIKEL---EKELEKAKKALEKNEKLKELRAELKELRKEAEEIHKKikelaeeaqelheemielYKE 203
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 929984459 447 ASEVKPPRD-ITAEFLVKSKHRDltALCKEYDQLAESQGKLEEKLQELEA 495
Cdd:COG1340 204 ADELRKEADeLHKEIVEAQEKAD--ELHEEIIELQKELRELRKELKKLRK 251
|
|
| PRK13984 |
PRK13984 |
putative oxidoreductase; Provisional |
256-297 |
5.30e-06 |
|
putative oxidoreductase; Provisional
Pssm-ID: 172486 [Multi-domain] Cd Length: 604 Bit Score: 50.15 E-value: 5.30e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 929984459 256 PTKKTGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:PRK13984 279 PEKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320
|
|
| PLN02487 |
PLN02487 |
zeta-carotene desaturase |
254-308 |
7.27e-06 |
|
zeta-carotene desaturase
Pssm-ID: 215268 [Multi-domain] Cd Length: 569 Bit Score: 49.41 E-value: 7.27e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 254 PLPTKKTG---KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATF--RKGNYV 308
Cdd:PLN02487 66 PEPEAYKGpklKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFvdKNGNHI 125
|
|
| proto_IX_ox |
TIGR00562 |
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a ... |
260-313 |
1.04e-05 |
|
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]
Pssm-ID: 213540 [Multi-domain] Cd Length: 462 Bit Score: 48.68 E-value: 1.04e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 929984459 260 TGKVIIIGSGVAGLAAARQLQ----SFGMDVTVLEARDRVGGRVATFRKGNYVADLGA 313
Cdd:TIGR00562 2 KKHVVIIGGGISGLCAAYYLEkeipELPVELTLVEASDRVGGKIQTVKEDGYLIERGP 59
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
392-495 |
1.24e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 392 QALEVVIQLQEKHVKDEQIEHWKK-----IVKTQDELKELLNKMVNVKEKIKELHQQYKEA-SEVKpprdiTAEFLVK-- 463
Cdd:COG1579 4 EDLRALLDLQELDSELDRLEHRLKelpaeLAELEDELAALEARLEAAKTELEDLEKEIKRLeLEIE-----EVEARIKky 78
|
90 100 110
....*....|....*....|....*....|....*....
gi 929984459 464 -------SKHRDLTALCKEYDQLAESQGKLEEKLQELEA 495
Cdd:COG1579 79 eeqlgnvRNNKEYEALQKEIESLKRRISDLEDEILELME 117
|
|
| PRK12831 |
PRK12831 |
putative oxidoreductase; Provisional |
251-297 |
1.47e-05 |
|
putative oxidoreductase; Provisional
Pssm-ID: 183780 [Multi-domain] Cd Length: 464 Bit Score: 48.48 E-value: 1.47e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 929984459 251 RLKPLPTKKTGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:PRK12831 131 DLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG 177
|
|
| PLN02612 |
PLN02612 |
phytoene desaturase |
213-303 |
1.98e-05 |
|
phytoene desaturase
Pssm-ID: 215330 [Multi-domain] Cd Length: 567 Bit Score: 48.30 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 213 FENTLQQLEAPYNSDSVlvhrihcylerhglinfgvykRLKPLPTKKTgKVIIIGSGVAGLAAARQLQSFGMDVTVLEAR 292
Cdd:PLN02612 68 LENTVNFLEAAALSASF---------------------RSAPRPAKPL-KVVIAGAGLAGLSTAKYLADAGHKPILLEAR 125
|
90
....*....|.
gi 929984459 293 DRVGGRVATFR 303
Cdd:PLN02612 126 DVLGGKVAAWK 136
|
|
| Lpd |
COG1249 |
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ... |
263-297 |
5.06e-05 |
|
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation
Pssm-ID: 440861 [Multi-domain] Cd Length: 456 Bit Score: 46.62 E-value: 5.06e-05
10 20 30
....*....|....*....|....*....|....*
gi 929984459 263 VIIIGSGVAGLAAARQLQSFGMDVTVLEaRDRVGG 297
Cdd:COG1249 6 LVVIGAGPGGYVAAIRAAQLGLKVALVE-KGRLGG 39
|
|
| TrkA |
COG0569 |
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ... |
249-318 |
7.11e-05 |
|
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];
Pssm-ID: 440335 [Multi-domain] Cd Length: 296 Bit Score: 45.44 E-value: 7.11e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 929984459 249 YKRLKPLPTKKTGKVIIIGSGVAGLAAARQLQSFGMDVTVLEA-RDRVggrvatfrkgNYVADLGAMVVTG 318
Cdd:COG0569 84 RRRMERGIKKLKMHVIIIGAGRVGRSLARELEEEGHDVVVIDKdPERV----------ERLAEEDVLVIVG 144
|
|
| PRK06753 |
PRK06753 |
hypothetical protein; Provisional |
262-422 |
7.72e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 168661 [Multi-domain] Cd Length: 373 Bit Score: 45.84 E-value: 7.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEardrvggrvatfrKGNYVADLGAMVvtGLGGNpmaVISKQVNMELAK-IKQ 340
Cdd:PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFE-------------KNESVKEVGAGI--GIGDN---VIKKLGNHDLAKgIKN 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 341 kcplyeaNGQGVPkekdemveqEFNRLLEATSYLSH-QLDFNILNnkpVSLGQalEVVIQLQEKHVKDEQIEHWKKIVKT 419
Cdd:PRK06753 64 -------AGQILS---------TMNLLDDKGTLLNKvKLKSNTLN---VTLHR--QTLIDIIKSYVKEDAIFTGKEVTKI 122
|
...
gi 929984459 420 QDE 422
Cdd:PRK06753 123 ENE 125
|
|
| Pyr_redox_2 |
pfam07992 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
262-298 |
8.33e-05 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 400379 [Multi-domain] Cd Length: 301 Bit Score: 45.39 E-value: 8.33e-05
10 20 30
....*....|....*....|....*....|....*...
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEA-RDRVGGR 298
Cdd:pfam07992 2 DVVVIGGGPAGLAAALTLAQLGGKVTLIEDeGTCPYGG 39
|
|
| AlaDh_PNT_C |
smart01002 |
Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase catalyzes the ... |
256-301 |
9.00e-05 |
|
Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine.
Pssm-ID: 214966 [Multi-domain] Cd Length: 149 Bit Score: 43.26 E-value: 9.00e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 929984459 256 PTKKTGKVIIIGSGVAGLAAARQLQSFGMDVTVL--------EARDRVGGRVAT 301
Cdd:smart01002 16 GGVPPAKVVVIGAGVVGLGAAATAKGLGAEVTVLdvrparlrQLESLLGARFTT 69
|
|
| Pyr_redox_2 |
pfam07992 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
251-295 |
1.10e-04 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 400379 [Multi-domain] Cd Length: 301 Bit Score: 45.00 E-value: 1.10e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 929984459 251 RLKPLPtkktGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRV 295
Cdd:pfam07992 147 RLKLLP----KRVVVVGGGYIGVELAAALAKLGKEVTLIEALDRL 187
|
|
| AlaDh_PNT_C |
pfam01262 |
Alanine dehydrogenase/PNT, C-terminal domain; This family now also contains the lysine ... |
256-295 |
1.55e-04 |
|
Alanine dehydrogenase/PNT, C-terminal domain; This family now also contains the lysine 2-oxoglutarate reductases.
Pssm-ID: 426165 [Multi-domain] Cd Length: 213 Bit Score: 43.64 E-value: 1.55e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 929984459 256 PTKKTGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRV 295
Cdd:pfam01262 24 PGVAPAKVLVIGGGVAGLNAAATAKGLGAIVTILDVRPAR 63
|
|
| PRK12778 |
PRK12778 |
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ... |
258-353 |
1.72e-04 |
|
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;
Pssm-ID: 237200 [Multi-domain] Cd Length: 752 Bit Score: 45.12 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 258 KKTGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG----RVATFRKGN--------YVADLGAMVVTGLggnpma 325
Cdd:PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGvlkyGIPEFRLPKkivdveieNLKKLGVKFETDV------ 502
|
90 100
....*....|....*....|....*...
gi 929984459 326 VISKQVNMELAKIKQKCPLYEANGQGVP 353
Cdd:PRK12778 503 IVGKTITIEELEEEGFKGIFIASGAGLP 530
|
|
| L-AlaDH |
cd05305 |
Alanine dehydrogenase NAD-binding and catalytic domains; Alanine dehydrogenase (L-AlaDH) ... |
261-301 |
2.18e-04 |
|
Alanine dehydrogenase NAD-binding and catalytic domains; Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.
Pssm-ID: 240630 [Multi-domain] Cd Length: 359 Bit Score: 44.32 E-value: 2.18e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 929984459 261 GKVIIIGSGVAGLAAARQLQSFGMDVTVL--------EARDRVGGRVAT 301
Cdd:cd05305 169 AKVVILGAGVVGENAARVALGLGAEVTVLdinlerlrYLDDIFGGRVTT 217
|
|
| Ald |
COG0686 |
Alanine dehydrogenase (includes sporulation protein SpoVN) [Amino acid transport and ... |
261-301 |
2.18e-04 |
|
Alanine dehydrogenase (includes sporulation protein SpoVN) [Amino acid transport and metabolism]; Alanine dehydrogenase (includes sporulation protein SpoVN) is part of the Pathway/BioSystem: Urea cycle
Pssm-ID: 440450 [Multi-domain] Cd Length: 372 Bit Score: 44.23 E-value: 2.18e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 929984459 261 GKVIIIGSGVAGLAAARQLQSFGMDVTVL--------EARDRVGGRVAT 301
Cdd:COG0686 169 AKVVILGGGVVGTNAARMALGLGADVTVLdinldrlrRLDDIFGGRVTT 217
|
|
| Pyr_redox |
pfam00070 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
262-295 |
2.73e-04 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 425450 [Multi-domain] Cd Length: 80 Bit Score: 40.27 E-value: 2.73e-04
10 20 30
....*....|....*....|....*....|....
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRV 295
Cdd:pfam00070 1 RVVVVGGGYIGLELAGALARLGSKVTVVERRDRL 34
|
|
| LhgO |
COG0579 |
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]; |
263-296 |
2.82e-04 |
|
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
Pssm-ID: 440344 [Multi-domain] Cd Length: 418 Bit Score: 43.98 E-value: 2.82e-04
10 20 30
....*....|....*....|....*....|....*
gi 929984459 263 VIIIGSGVAGLAAARQL-QSFGMDVTVLEARDRVG 296
Cdd:COG0579 7 VVIIGAGIVGLALARELsRYEDLKVLVLEKEDDVA 41
|
|
| SdhA |
COG1053 |
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ... |
263-297 |
4.40e-04 |
|
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle
Pssm-ID: 440673 [Multi-domain] Cd Length: 443 Bit Score: 43.67 E-value: 4.40e-04
10 20 30
....*....|....*....|....*....|....*
gi 929984459 263 VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:COG1053 6 VVVVGSGGAGLRAALEAAEAGLKVLVLEKVPPRGG 40
|
|
| NirB |
COG1251 |
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion]; |
258-299 |
4.63e-04 |
|
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
Pssm-ID: 440863 [Multi-domain] Cd Length: 402 Bit Score: 43.59 E-value: 4.63e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 929984459 258 KKTGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRV 299
Cdd:COG1251 140 APGKRVVVIGGGLIGLEAAAALRKRGLEVTVVERAPRLLPRQ 181
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
399-510 |
5.60e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 5.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 399 QLQEKhvKDEQIEHWKKIVKTQDELKELLNKMVNVKEKIKELHQQYKEASEvkpprditaeflvkskhrDLTALCKEYDQ 478
Cdd:COG4372 67 ELEQA--RSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQE------------------ELEELQKERQD 126
|
90 100 110
....*....|....*....|....*....|..
gi 929984459 479 LAESQGKLEEKLQELEANppsdvyLSSRDRQI 510
Cdd:COG4372 127 LEQQRKQLEAQIAELQSE------IAEREEEL 152
|
|
| PRK06292 |
PRK06292 |
dihydrolipoamide dehydrogenase; Validated |
251-297 |
5.64e-04 |
|
dihydrolipoamide dehydrogenase; Validated
Pssm-ID: 235774 [Multi-domain] Cd Length: 460 Bit Score: 43.24 E-value: 5.64e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 929984459 251 RLKPLPtkktGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:PRK06292 164 ELDKLP----KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206
|
|
| YhiN |
COG2081 |
Predicted flavoprotein YhiN [General function prediction only]; |
264-296 |
6.68e-04 |
|
Predicted flavoprotein YhiN [General function prediction only];
Pssm-ID: 441684 [Multi-domain] Cd Length: 402 Bit Score: 43.12 E-value: 6.68e-04
10 20 30
....*....|....*....|....*....|...
gi 929984459 264 IIIGSGVAGLAAARQLQSFGMDVTVLEARDRVG 296
Cdd:COG2081 1 IVIGAGAAGLMAAITAAERGARVLLLEKNPKVG 33
|
|
| FAD_binding_2 |
pfam00890 |
FAD binding domain; This family includes members that bind FAD. This family includes the ... |
263-297 |
7.22e-04 |
|
FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Pssm-ID: 395718 [Multi-domain] Cd Length: 398 Bit Score: 42.66 E-value: 7.22e-04
10 20 30
....*....|....*....|....*....|....*
gi 929984459 263 VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:pfam00890 2 VLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPFGG 36
|
|
| PRK07538 |
PRK07538 |
hypothetical protein; Provisional |
262-291 |
8.27e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 236046 [Multi-domain] Cd Length: 413 Bit Score: 42.58 E-value: 8.27e-04
10 20 30
....*....|....*....|....*....|
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEA 291
Cdd:PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEA 31
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
333-507 |
9.76e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 333 MELAKIKQKCPL----------------YEANGQGVPKEKDEMVEQE---FNRLLEATSYLSHQldfnilnNKPVSLGQA 393
Cdd:PRK03918 429 EELKKAKGKCPVcgrelteehrkelleeYTAELKRIEKELKEIEEKErklRKELRELEKVLKKE-------SELIKLKEL 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 929984459 394 LEVVIQLQEK---HVKDEQIEHWKKIVKTQDELKELLNKMVNVKEKIKELHQQYKEASEVkpprditaEFLVKSKHRDLT 470
Cdd:PRK03918 502 AEQLKELEEKlkkYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAEL--------EKKLDELEEELA 573
|
170 180 190
....*....|....*....|....*....|....*...
gi 929984459 471 ALCKEYDQLA-ESQGKLEEKLQELEanPPSDVYLSSRD 507
Cdd:PRK03918 574 ELLKELEELGfESVEELEERLKELE--PFYNEYLELKD 609
|
|
| mnmC |
PRK01747 |
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ... |
249-296 |
1.16e-03 |
|
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;
Pssm-ID: 234978 [Multi-domain] Cd Length: 662 Bit Score: 42.53 E-value: 1.16e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 929984459 249 YKRLKPLPTKKtgkVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVG 296
Cdd:PRK01747 252 FARPGSPKARD---AAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296
|
|
| PRK12843 |
PRK12843 |
FAD-dependent oxidoreductase; |
248-301 |
1.36e-03 |
|
FAD-dependent oxidoreductase;
Pssm-ID: 237225 [Multi-domain] Cd Length: 578 Bit Score: 42.03 E-value: 1.36e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 929984459 248 VYKRLKPLPTKKTGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVAT 301
Cdd:PRK12843 4 VVSELSPERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57
|
|
| PRK12842 |
PRK12842 |
putative succinate dehydrogenase; Reviewed |
255-301 |
3.13e-03 |
|
putative succinate dehydrogenase; Reviewed
Pssm-ID: 237224 [Multi-domain] Cd Length: 574 Bit Score: 41.22 E-value: 3.13e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 929984459 255 LPTKKTGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVAT 301
Cdd:PRK12842 4 MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50
|
|
| PRK12770 |
PRK12770 |
putative glutamate synthase subunit beta; Provisional |
244-297 |
3.28e-03 |
|
putative glutamate synthase subunit beta; Provisional
Pssm-ID: 237197 [Multi-domain] Cd Length: 352 Bit Score: 40.74 E-value: 3.28e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 929984459 244 INFGVYKRLKPLPTKKtgKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:PRK12770 4 MKFAFMCKEKPPPTGK--KVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGG 55
|
|
| FixC |
COG0644 |
Dehydrogenase (flavoprotein) [Energy production and conversion]; |
269-299 |
3.29e-03 |
|
Dehydrogenase (flavoprotein) [Energy production and conversion];
Pssm-ID: 440409 [Multi-domain] Cd Length: 281 Bit Score: 40.34 E-value: 3.29e-03
10 20 30
....*....|....*....|....*....|.
gi 929984459 269 GVAGLAAARQLQSFGMDVTVLEARDRVGGRV 299
Cdd:COG0644 2 GPAGSAAARRLARAGLSVLLLEKGSFPGDKI 32
|
|
| PRK08243 |
PRK08243 |
4-hydroxybenzoate 3-monooxygenase; Validated |
262-299 |
3.97e-03 |
|
4-hydroxybenzoate 3-monooxygenase; Validated
Pssm-ID: 236198 [Multi-domain] Cd Length: 392 Bit Score: 40.55 E-value: 3.97e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDR--VGGRV 299
Cdd:PRK08243 4 QVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSReyVEGRI 43
|
|
| PRK06134 |
PRK06134 |
putative FAD-binding dehydrogenase; Reviewed |
263-300 |
4.24e-03 |
|
putative FAD-binding dehydrogenase; Reviewed
Pssm-ID: 180419 [Multi-domain] Cd Length: 581 Bit Score: 40.47 E-value: 4.24e-03
10 20 30
....*....|....*....|....*....|....*...
gi 929984459 263 VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVA 300
Cdd:PRK06134 15 VLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52
|
|
| NadB |
COG0029 |
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ... |
263-289 |
4.59e-03 |
|
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis
Pssm-ID: 439800 [Multi-domain] Cd Length: 521 Bit Score: 40.48 E-value: 4.59e-03
10 20
....*....|....*....|....*..
gi 929984459 263 VIIIGSGVAGLAAARQLQSFGmDVTVL 289
Cdd:COG0029 7 VLVIGSGIAGLSAALKLAERG-RVTLL 32
|
|
| MRPL52 |
pfam18699 |
Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins ... |
379-452 |
4.81e-03 |
|
Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins mL52 which is found in the 39S subunit. The mL52 has no homologs in yeast.
Pssm-ID: 465836 Cd Length: 91 Bit Score: 37.18 E-value: 4.81e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 929984459 379 DFNILNNKPVSLGQalevviqLQEKHvKDEQIEHWKKIVKTQDELKELLnKMVNVKEKIKELHQQYKEASEVKP 452
Cdd:pfam18699 25 DFSFADGRPAPVTS-------GQLKR-KLKQIELAKKIVKLSSEVDEAE-ERYKRKQEEEEEEIQKIIDNKLKP 89
|
|
| FAD_oxidored |
pfam12831 |
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ... |
263-321 |
5.02e-03 |
|
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.
Pssm-ID: 432816 [Multi-domain] Cd Length: 420 Bit Score: 40.28 E-value: 5.02e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 929984459 263 VIIIGSGVAG----LAAARQlqsfGMDVTVLEARDRVGGR-----VATFRkGNYVADlgAMVVTGLGG 321
Cdd:pfam12831 2 VVVVGGGPAGvaaaIAAARA----GAKVLLVERRGFLGGMltsglVGPDM-GFYLNK--EQVVGGIAR 62
|
|
| PRK06416 |
PRK06416 |
dihydrolipoamide dehydrogenase; Reviewed |
262-295 |
5.53e-03 |
|
dihydrolipoamide dehydrogenase; Reviewed
Pssm-ID: 235798 [Multi-domain] Cd Length: 462 Bit Score: 40.13 E-value: 5.53e-03
10 20 30
....*....|....*....|....*....|....
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRV 295
Cdd:PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207
|
|
| MurD |
COG0771 |
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ... |
262-318 |
7.54e-03 |
|
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis
Pssm-ID: 440534 [Multi-domain] Cd Length: 445 Bit Score: 39.68 E-value: 7.54e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKgnyvadLGAMVVTG 318
Cdd:COG0771 6 KVLVLGLGKSGLAAARLLAKLGAEVTVSDDRPAPELAAAELEA------PGVEVVLG 56
|
|
| FadH2 |
COG0446 |
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ... |
255-299 |
7.88e-03 |
|
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];
Pssm-ID: 440215 [Multi-domain] Cd Length: 322 Bit Score: 39.41 E-value: 7.88e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 929984459 255 LPTKKTGKVIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGGRV 299
Cdd:COG0446 119 LKEFKGKRAVVIGGGPIGLELAEALRKRGLKVTLVERAPRLLGVL 163
|
|
| Lpd |
COG1249 |
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ... |
251-298 |
8.22e-03 |
|
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation
Pssm-ID: 440861 [Multi-domain] Cd Length: 456 Bit Score: 39.68 E-value: 8.22e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 929984459 251 RLKPLPtkktGKVIIIGSGVAG--LAAArqLQSFGMDVTVLEARDRVGGR 298
Cdd:COG1249 163 ELEELP----KSLVVIGGGYIGleFAQI--FARLGSEVTLVERGDRLLPG 206
|
|
| PLN02172 |
PLN02172 |
flavin-containing monooxygenase FMO GS-OX |
252-297 |
8.56e-03 |
|
flavin-containing monooxygenase FMO GS-OX
Pssm-ID: 215116 [Multi-domain] Cd Length: 461 Bit Score: 39.46 E-value: 8.56e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 929984459 252 LKPLPTKKTGK-VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:PLN02172 1 MAPAQNPINSQhVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG 47
|
|
| PRK05249 |
PRK05249 |
Si-specific NAD(P)(+) transhydrogenase; |
263-297 |
9.27e-03 |
|
Si-specific NAD(P)(+) transhydrogenase;
Pssm-ID: 235373 [Multi-domain] Cd Length: 461 Bit Score: 39.37 E-value: 9.27e-03
10 20 30
....*....|....*....|....*....|....*
gi 929984459 263 VIIIGSGVAGLAAARQLQSFGMDVTVLEARDRVGG 297
Cdd:PRK05249 8 LVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGG 42
|
|
| PRK07208 |
PRK07208 |
hypothetical protein; Provisional |
561-623 |
9.63e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 235967 [Multi-domain] Cd Length: 479 Bit Score: 39.49 E-value: 9.63e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 929984459 561 AEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVL-----KQQPPAVQFVP 623
Cdd:PRK07208 230 ALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELvaaldPPPPPEVRAAA 297
|
|
| PRK06847 |
PRK06847 |
hypothetical protein; Provisional |
262-297 |
9.85e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 235874 [Multi-domain] Cd Length: 375 Bit Score: 39.09 E-value: 9.85e-03
10 20 30
....*....|....*....|....*....|....*...
gi 929984459 262 KVIIIGSGVAGLAAARQLQSFGMDVTVLEARD--RVGG 297
Cdd:PRK06847 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPewRVYG 43
|
|
| |
