NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|927372450|ref|YP_009164729|]
View 

NADH dehydrogenase subunit 2 (mitochondrion) [Psittrichas fulgidus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.84e-145

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 412.68  E-value: 8.84e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   1 MSPLTKLISTLSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSLNPTLLTTLSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATIISMLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWPTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 927372450 321 TNTLIPMLTSLSILLLPLSPMILTTI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.84e-145

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 412.68  E-value: 8.84e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   1 MSPLTKLISTLSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSLNPTLLTTLSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATIISMLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWPTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 927372450 321 TNTLIPMLTSLSILLLPLSPMILTTI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.56e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 108.55  E-value: 2.56e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   23 SNHWMMAWTGLEINTLAIIPLI-SKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQL--THPP------ 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   94 ---SCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLT-TALLLSTAMKLPPTAILLLTS--HSLNPT---LLTTLSIMSIAL 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  165 GGWMGLNQTQTRKILAFSSISHLGWMTAII----IYNPKLTLLTFYTYILMTTSIFL--------TMNTTNTLKLSTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 927372450  233 sWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 5.26e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.59  E-value: 5.26e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  14 LLGTTITITSNHWMMAWTGLEINTLAIIPLIS-KPHHPRAIEAATKYFLVQATASALMLF-SSMTNAqFTGQWDITQL-- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  90 ------THPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILL----LTSHSLNP---T 152
Cdd:COG1007  191 alaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllvEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 153 LLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWM-TAIIIYNPK-LTLLTFY--TYILMTTSIFLTM-----NTTN 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYllAYLFMNLGAFAVIlllsrKGGE 350

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 927372450 224 TLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATI 281
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-273 1.54e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.54e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   14 LLGTTITITSNHWMMAWTGLEINTLAIIPLIS-KPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   93 PSC------------LLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILL-------LTSHSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  154 LTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGW-MTAIIIYNP---KLTLLTFYTYILMTTSIFLTM------NTTN 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLegiKAVLFYIFIYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 927372450  224 TLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQ 273
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKS 401
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.84e-145

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 412.68  E-value: 8.84e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   1 MSPLTKLISTLSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSLNPTLLTTLSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATIISMLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWPTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 927372450 321 TNTLIPMLTSLSILLLPLSPMILTTI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-324 4.98e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 352.57  E-value: 4.98e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   1 MSPLTKLISTLSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQF 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSlNPTLLTTLSIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATIISMLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWPTKKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ....
gi 927372450 321 TNTL 324
Cdd:MTH00135 320 QLTL 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-327 4.38e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 347.29  E-value: 4.38e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   1 MSPLTKLISTLSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQF 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSLNPTLLTTLSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATIISMLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWPTKKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*..
gi 927372450 321 TNTLIPM 327
Cdd:MTH00070 321 TNNLLSL 327
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-327 2.06e-108

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 320.25  E-value: 2.06e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   1 MSPLTKLISTLSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQF 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSLNPTLLTTLSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATIISMLSLLSLFFYLRLAYCSTITLPPNPSN-KMK-QWPTK 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKwQFENT 320


                 ....*....
gi 927372450 319 KPTNTLIPM 327
Cdd:MTH00105 321 KPMTLLPTL 329
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-327 5.56e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 275.69  E-value: 5.56e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   1 MSPLTKLISTLSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQF 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSLNPTLLTTLSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATIISMLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWPTKKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ....*..
gi 927372450 321 TNTLIPM 327
Cdd:MTH00200 321 SNLLVGL 327
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-326 1.06e-77

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 241.76  E-value: 1.06e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  11 LSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQLT 90
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  91 HPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSLNPTLLTTLSIMSIALGGWMGL 170
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 171 NQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLS 250
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 927372450 251 LAGLPPLTGFLPKWLIIQELTKQETTTVATIISMLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWPTKKPTNTLIP 326
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-327 1.21e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 176.94  E-value: 1.21e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   1 MSPLTKLISTLSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQF 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  81 TGqwditqLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPtaiLLLTSHSLNPTLLTTLSIM 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATIISMLSLLSLFFYLRLAYCSTITLppNPSNKMKQWPTKKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLN--YNKNKWNLKKKKNK 310


                 ....*..
gi 927372450 321 TNTLIPM 327
Cdd:MTH00160 311 FSLILNF 317
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-272 2.72e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.05  E-value: 2.72e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   1 MSPLTKLISTLSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQF 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  81 TGQWDITqlthppscLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPtaILLLTSHSLNPTLLTTL--- 157
Cdd:MTH00144  81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLLcvi 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 158 SIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTlMTSWTKT 237
Cdd:MTH00144 151 SVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPS 229

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 927372450 238 PMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:MTH00144 230 YKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSME 264
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-274 7.18e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.09  E-value: 7.18e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   1 MSPLTKLISTlSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSmtnaqf 80
Cdd:MTH00011   4 TFPTMFLFSS-TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------ 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  81 TGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSLNPTLLTTLSIM 160
Cdd:MTH00011  77 TMMWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 161 SIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPML 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                        250       260       270
                 ....*....|....*....|....*....|....
gi 927372450 241 NTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQE 274
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNS 270
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-270 3.12e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 144.04  E-value: 3.12e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  11 LSLLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMtnAQFTGQWditqlT 90
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY-----L 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  91 HPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPtaILLLTSHSLNPTLLTTLSIMSIALGGWMGL 170
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGM 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 171 NQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILMTTSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLS 250
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                        250       260
                 ....*....|....*....|
gi 927372450 251 LAGLPPLTGFLPKWLIIQEL 270
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSL 255
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.56e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 108.55  E-value: 2.56e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   23 SNHWMMAWTGLEINTLAIIPLI-SKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQL--THPP------ 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   94 ---SCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLT-TALLLSTAMKLPPTAILLLTS--HSLNPT---LLTTLSIMSIAL 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  165 GGWMGLNQTQTRKILAFSSISHLGWMTAII----IYNPKLTLLTFYTYILMTTSIFL--------TMNTTNTLKLSTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 927372450  233 sWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 4.28e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 109.73  E-value: 4.28e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  13 LLLGTTITITSNHWMMAWTGLEINTLAIIPLI-SKPHHPRAIEAATKYFLVQATASALMLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  79 QFTGQWDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLltSHSLNPTLLTTLS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 159 IMSIALGGWMGLNQTQTRKILAFSSISHLGWMTAII----IYNPKLTLLTFYTYILMTTSIFLTMNTTNTLK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 927372450 233 SWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 5.26e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.59  E-value: 5.26e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  14 LLGTTITITSNHWMMAWTGLEINTLAIIPLIS-KPHHPRAIEAATKYFLVQATASALMLF-SSMTNAqFTGQWDITQL-- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  90 ------THPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILL----LTSHSLNP---T 152
Cdd:COG1007  191 alaaggANSPllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllvEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 153 LLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWM-TAIIIYNPK-LTLLTFY--TYILMTTSIFLTM-----NTTN 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYllAYLFMNLGAFAVIlllsrKGGE 350

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 927372450 224 TLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATI 281
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 11-267 1.17e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 98.17  E-value: 1.17e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  11 LSLLLGTTITITSNHWMMAWTGLEINTLAIIPLIS-KPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDI--- 86
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqgi 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  87 -TQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSLNPTLLTtlSIMSIALG 165
Cdd:MTH00199 184 nSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYG 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 166 GWMGLNQTQTRKILAFSSISHLG---WMTAIIIYNP-KLTLLTFYTYILMTT---SIFLTMNTTNTLKLSTLMTSwTKTP 238
Cdd:MTH00199 262 AIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNP 340

                        250       260
                 ....*....|....*....|....*....
gi 927372450 239 MLNTTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 341 VIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-268 1.43e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.97  E-value: 1.43e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  14 LLGTTITITSNHWMMAWTGLEINTLAIIPLIS-KPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQL--- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  90 -----THPP----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILL-------LTSHSLNPTL 153
Cdd:PRK05777 193 ladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvvafGGLSEDWQQV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 154 LTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWM-TAIIIYNPK-LTLLTFY--TYILMTTSIF--LTMNTTNTLKL 227
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlVGLAAGTAEgYSAVLFYllAYLFMTLGAFgvISLLRRKGGEA 352

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 927372450 228 STLmTSWT----KTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK05777 353 ESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFE 396
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-273 1.54e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.54e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   14 LLGTTITITSNHWMMAWTGLEINTLAIIPLIS-KPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   93 PSC------------LLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILL-------LTSHSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  154 LTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGW-MTAIIIYNP---KLTLLTFYTYILMTTSIFLTM------NTTN 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLegiKAVLFYIFIYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 927372450  224 TLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQ 273
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKS 401
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 1.06e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.35  E-value: 1.06e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  13 LLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQLTH- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  92 ----PPS-----CLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAM-KLPPTAIL----LLTSHSLNP---TLL 154
Cdd:COG0651  196 laelDPGlllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVYAILrvltLLFGADPALflgTLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 155 TTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMT-AIIIYNPKLTLLTFY---TYILMTTSIFLT----MNTTNTLK 226
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILlGLGLGTPLGLAGALFhllNHALAKALLFLAagaiERATGTRD 355

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 927372450 227 LSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATII 282
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-267 3.42e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 82.60  E-value: 3.42e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  15 LGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAI---------EAATKYFLVQATASALMLFSSMTNAQFTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  84 ------------WDITQLTHPPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLppTAILLLTSHSLNP 151
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 152 TLLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYILM-TTSIFLTMNTTNTL----- 225
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTyLVSALASFTVICTLeefgt 436

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 927372450 226 -------------------KLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 437 rtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 2.52e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 67.72  E-value: 2.52e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  51 RAIEAATKYFLVQATASALML--FSSMTNAQfTGQWDI---------TQLTHPPSCLL----LTTAIAIKLGLTPFHFWF 115
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLYGLS-GGEIELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWT 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 116 PEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSLNPT-------LLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:CHL00049 238 PDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIG 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 189 W-MTAIIIYNPKLTLLTFYTYilMTTSIFLTMNTTNTLKLSTLMT----------SWTKTPMLNTTLMLTLLSLAGLPPL 257
Cdd:CHL00049 318 YvIIGIIVGDSNDGYASMITY--MLFYIFMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGGIPPL 395


                 ....*.
gi 927372450 258 TGFLPK 263
Cdd:CHL00049 396 AGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 6.49e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 66.26  E-value: 6.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  38 LAIIP---LISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQW--DITQLTH---PPS-----CLLLTTAIAI 104
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 105 KLGLTPFHFWFPEVLQGSPLTTALLLSTAMK-----------LPptaILLLTSHSLNPTLLTtLSIMSIALGGWMGLNQT 173
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLAA-LGVIGIIYGALVALAQT 297

                        170
                 ....*....|....*....
gi 927372450 174 QTRKILAFSSISHLGWMTA 192
Cdd:COG1008  298 DLKRLIAYSSVSHMGFVLL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 9.93e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 65.84  E-value: 9.93e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  50 PRAIEAATKYFLVQATASALMLF-SSMTNAQFTGQWDIT----QLTHPPSCLLLTT------AIAIKLGLTPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialALITSPSLGLALAlvfviaGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 119 LQGSPLTTALLLSTAMKLPPTAI---LLLTSHSLNPT----LLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGW-M 190
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 191 TAIII-YNPKLTLLTFY--TYILMT----TSIFLTMNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK02504 317 IGLVAgTEAGYASMVFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 6.46e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 63.19  E-value: 6.46e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  33 LEINTLAIIPLIS-KPHHPRAIEAATKYFLVQATASALMLFS-SMTNAQF---TGQWDITQLTHPPSCL------LLTTA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiALLYGQYgtlNMAYLAVKMSENPTVVakialaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 102 IAIKLGLTPFHFWFPEVLQGSP--LTTALLLSTAMKLPPTAILLLTSHSLNPTLLTT------LSIMSIALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 174 QTRKILAFSSISHLGWM-----TAIIIYNPklTLLTFYTYILMTTSIFLTMN--------------------TTNTLKLS 228
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgVGLAALGD--PAMASYGEIALAGGIYHIVNhalykallfltagaviyetgTRNLNELG 387

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 927372450 229 TLMTswtKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 388 GLAR---TMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-270 2.99e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 61.05  E-value: 2.99e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  33 LEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFS-SMTNAQfTGQWDITQLTH--PPSCLLLT------TAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYGV-TGTLNMADLAGalAENPTVVTafgfvlLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 104 IKLGLTPFHFWFPEVLQG-SPLTTALLLSTAMKLPPTAILLLTSHSLNP---------TLLTTLSIMSIALGGWMGLNQT 173
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 174 QTRKILAFSSISHLGWMTAIIIYNPKLTLL--TFYT--YILMTTSIFLT----MNTTNTLKLSTLMTSWTKTPMLNTTLM 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFA 373

                        250       260
                 ....*....|....*....|....*
gi 927372450 246 LTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGA 398
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-191 3.64e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 57.64  E-value: 3.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   50 PRAIEAATKYFLVQATASALMLfSSMTNAQFTGQW-----DITQLTHPPSC-----LLLTTAIAIKLGLTPFHFWFPEVL 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLML-LAILGLYFLGGGtfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAH 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  120 QGSPLTTALLLS-TAMKLPPTAILLL-------TSHSLNPtLLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMT 191
Cdd:TIGR01972 231 VEAPTAGSVILAgVLLKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-191 4.31e-09

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 57.52  E-value: 4.31e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  50 PRAIEAATKYFLVQATASALMLFSSMT----NAQFTGQWDITQLTHPPSCLLLTT--------AIAIKLGLTPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 118 VLQ-----GSPLTTALLLSTA------MKLPptaILLLTSHSLNPtLLTTLSIMSIALGGWMGLNQTQTRKILAFSSISH 186
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGaygllrFSLP---LFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                 ....*
gi 927372450 187 LGWMT 191
Cdd:PRK05846 313 MGFVT 317
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-282 8.25e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 56.93  E-value: 8.25e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  34 EINTLA---IIPLISKphhpRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDIT-------QLTHPPSC----LLLT 99
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFAlivfLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 100 TAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLT-----------------SHSLNPTLLTTLSIMSI 162
Cdd:PRK08668 204 AFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVlyvlpgtklfsefgtyrGVPLFNYILAWLGNISI 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 163 ALGGWMGLNQTQTRKILAFSSISHLGWmtaIIIYNPKLTLLTF-------YTYILMTTSIFLTMNT----TNTLKLSTLM 231
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMG 360

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 927372450 232 TSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATII 282
Cdd:PRK08668 361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-198 1.09e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 56.30  E-value: 1.09e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  13 LLLGTTITITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATA------SALMLFSSMTNAQFTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  87 TQLTH-----PPSCLLLT-----TAIAIKLGLTPFHFWFPEVLQGSP-LTTALLLSTAMKLPPTAILLLTS-------HS 148
Cdd:PRK08676 191 TELAAhasllSPSVLGASflfifIGFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 927372450 149 LNPTLLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWM-TAIIIYNP 198
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMlLGIGIGTP 321
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 79-263 6.58e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 54.16  E-value: 6.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  79 QFTGQWDITQL-THPPSCLLLTTAIAI-------KLGLTPFHFWFPEVLQGSPLTTALLLSTAM---------KLPPTai 141
Cdd:PRK12644 182 QAAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG-- 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 142 lLLTSHSLNPTLLTtLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYI----LMTTSIFL 217
Cdd:PRK12644 260 -FADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLlahaLFKAALFL 337

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 927372450 218 TM----NTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 338 VVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK12650 PRK12650
DUF4040 family protein;
98-263 4.33e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 51.58  E-value: 4.33e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  98 LTTAIAIKLGLT--------PFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILLLTS--HSLNPT---LLTTLSIMSIAL 164
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALM 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 165 GGWMGLNQTQTRKILAFSSISHLGWMTAII-IYNP-KLTLLTFYT--YILMTTSIFLTM----NTTNTLKLSTLMTSWTK 236
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIgVGTPfALTAAVVHTlaHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                        170       180
                 ....*....|....*....|....*..
gi 927372450 237 TPMLNTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-270 6.61e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 50.92  E-value: 6.61e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  48 HHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQLTHPPSCLL---LTTAIAI--------KLGLTPFHFWFP 116
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILsspLLTLILLllllgafgKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 117 EVLQG----SplttALLLSTAMKlppTA--ILLLTSH---SLNPTLLTTLSIMSIA---LGGWMGLNQTQTRKILAFSSI 184
Cdd:COG1009  236 DAMEGptpvS----ALLHAATMV---KAgvYLLARLSplfALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTV 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 185 SHLGWMTAIIiynpKLTLLTFYTYILMTTSIF------------LTMNTTNTLKLSTLmtsWTKTPMLNTTLMLTLLSLA 252
Cdd:COG1009  309 SQLGYMFLAL----GVGAYVAALFHLLTHAFFkallflgagsviHATGTRDIRKMGGL---RKKMPITAITFLIGALSLA 381

                        250
                 ....*....|....*...
gi 927372450 253 GLPPLTGFLPKWLIIQEL 270
Cdd:COG1009  382 GIPPFAGFFSKEAILEAA 399
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.85e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 49.83  E-value: 1.85e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  48 HHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQLTHPPSC--------LLLTTAIAIKLGLT------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 114 WFPEVLQGSPLTTALLLSTAMKLPPTAILLLTSHSLNPT-----LLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 189 WMTAIIIYNPK--------------LTLLTFYTYILMTTSIFLTMNTTNTL-KLSTLMtswTKTPMLNTTLMLTLLSLAG 253
Cdd:PRK12649 316 YLMTMYGYTTYhepglgvaaatfhlLNHATFKACLFLVAGIVAHEAATRDIrKLGGLR---KEMPITFIVASIAALAMAG 392

                        250
                 ....*....|
gi 927372450 254 LPPLTGFLPK 263
Cdd:PRK12649 393 IPPLNGFLSK 402
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 2.08e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 49.18  E-value: 2.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  33 LEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQL-THPPSCL-LLTTAIAIKLGLTP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLaTADPEAFaLIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 111 FHFWFPEVLQGSPLTTALLLSTAM---KLPPTAILLLTSHSLNPtLLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHL 187
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 188 GWMTAIIIYNPKLTLltfyTYILMTTSIFLTMNT----TNTLKLSTLMTSWTKTPmlnttLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK07234 282 GFILAAPLVGGLYAL----AHGLVKSTLFLCAGAlpsrNFTELISQMLGIGKWIP-----LTMASFSIAGFPLLAGFVSK 352


                 ....*...
gi 927372450 264 WLIIQELT 271
Cdd:PRK07234 353 VLTLKNLL 360
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-191 4.13e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.39  E-value: 4.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  20 TITSNHWMMAWTGLEINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSS----MTNAQFTGQWDI----TQLTH 91
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyANAATVMGDGEMailwTELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  92 PPSCL---LLTTAIAI-------KLGLTPFHFWFPEVLQGSP-----LTTALLLSTAMklppTAIL---LLTSHSLNP-- 151
Cdd:PRK06458 204 HASLLdptLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVAL----YAVLryyILIDAAIGSdf 279

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 927372450 152 --TLLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMT 191
Cdd:PRK06458 280 pgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIA 321
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-267 4.22e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.19  E-value: 4.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  96 LLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLS-TAMKLPPTAI-----------LLLTSHSLNpTLLTTLSIMSIA 163
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 164 LGGWMGLNQTQTRKILAFSSISHLGWMTAIIIYNPKLTLLTFYTYI----LMTTSIFLTMNTT----NTLKLSTLMTSWT 235
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTTKLEDCLNLWK 371

                        170       180       190
                 ....*....|....*....|....*....|..
gi 927372450 236 KTPMLNTTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 2.55e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 45.79  E-value: 2.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  34 EINTLAIIPLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQ-----LTHPPSCLLLTTAIAIKLG- 107
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGl 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 108 -----LTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAILL--------LTSHSLNPTLLTTLSIMSIALGGWMGLNQTQ 174
Cdd:PRK06277 210 lygsgLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 175 TRKILAFSSISHLGWMTAIIIYNPKLT----LLTFYTYILMTTSIFL-------TMNTTNTLKLSTLMTSwtkTPMLNTT 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLgagivsyRTKTSNLRKLGGLLPV---MPVVAFM 366

                        250       260
                 ....*....|....*....|....*
gi 927372450 244 LMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-188 1.42e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.48  E-value: 1.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  55 AATKYFLVQATASALMLFSSMTNAQFTGQ--WDITQLT--HPPSCLLLT------TAIAIKLGLTPFHFWFPEVL-QGSP 123
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGakSYPLALELLlyagflIAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 927372450 124 LTTALLLSTAMKLPPTAI------LLLTSHSLNPTLLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 1.63e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.42  E-value: 1.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  96 LLLTTAIAIKLGLTPFHFWFPEVLQGSP-LTTALLLSTAMKLPPTAI-----LLLTSHSLNpTLLTTLSIMSIALGGWMG 169
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPaPVTAVFAGLLTKVGVYAIirthtLLFPGGGLD-TLLMVVALLTMVVGILGA 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 170 LNQTQTRKILAFSSISHLGWMT-AIIIYNPK-LTLLTFYT--YILMTTSIFLTMN-------TTNTLKLSTLMTSwtkTP 238
Cdd:PRK12665 292 IAQSDIKRLLSFTLVSHIGYMVfGIALSTVAgLSGAIYYVahHITVQTTLFLVVGlierqagSSSLRRLGGLAKA---SP 368

                        170       180       190
                 ....*....|....*....|....*....|
gi 927372450 239 MLNTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 369 LLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-266 1.75e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 43.37  E-value: 1.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 110 PFHFWFPEVLQG-SPLTTALLLSTAMKLpptAILLLTShsLNPTL------LTTLSI---MSIALGGWMGLNQTQTRKIL 179
Cdd:PRK12647 213 PFHFWLPNAMEApTPVSAYLHSATMVKA---GIYLLAR--LNPVLggtplwQTILPLfggLTMLTGALLAVRQTDLKLIL 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 180 AFSSISHLGWMTAIIIYNPKLTLLTFYTYI----LMTTSIFLTMNT----TNTLKLSTLMTSWTKTPMLNTTLMLTLLSL 251
Cdd:PRK12647 288 AYSTVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALSM 367

                        170
                 ....*....|....*
gi 927372450 252 AGLPPLTGFLPKWLI 266
Cdd:PRK12647 368 AGLPPLFGFLAKELI 382
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 7-270 3.63e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 42.47  E-value: 3.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450   7 LISTLSL-LLGTTITITSNHWMM---AWTGLEINTLAIIPLISKPHHPraieaATKYFLVQATASALMLFSSMTNAQFTG 82
Cdd:PRK06459  74 LSSLYILtILGMAIVLTSDNYLLflaGWEIMTIPSYVAIALTKKNKRP-----AFVFMAFGELSTVLILAGFAWAFIISG 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  83 QWDITQLTHPPSCLLLTTAIAIKLGLTPFHF--WFPEVLQGSPLTTALLLSTAMKLPP----TAILLLTSHSLNPTLLTT 156
Cdd:PRK06459 149 TTNFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGvygiLKMTILTQTIPIGYFGLT 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 157 LSIM---SIALGGWMGLNQTQTRKILAFSSISHLGWMTA-----IIIYNPKLTLLTFYTYILMTTSI-------FLTMNT 221
Cdd:PRK06459 229 ILAIgafSILFGALYAYVSENVKGLLAFSTIENNGAILValglyMVTKQLITSIEHFSLITVILYSFahsvaktGLFLSS 308

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 927372450 222 TNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459 309 GLQEKQSITYSKKIRNRWIELGLTLLASSLSGLLPNIGGVASWLLLESL 357
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
10-129 4.01e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 41.99  E-value: 4.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  10 TLSLLLGTTITITSNHW---MMAW--TGLEINTLaiipLISKPHHPRAIEAATKYFLVQATASALMLFSSMTNAQFTGQW 84
Cdd:PRK08168 106 LAGVLAAVHLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSL 181

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 927372450  85 DITQL--------THPP---SCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALL 129
Cdd:PRK08168 182 SLSALwahlaaqgASPSlqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALL 237
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 53-191 5.68e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 41.59  E-value: 5.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  53 IEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQLTHP--PSCLLLTTAI------AIKLGLTPFHFWFPEVLQGSPL 124
Cdd:MTH00204 162 VRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILLNIklPLSIQKWLLVgfflslAVKIPQIPFHIWLPQAHVEAPV 241

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 927372450 125 TTALLLS-TAMKLP-------PTAILLLTSHSLNPtLLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMT 191
Cdd:MTH00204 242 AGSVILAgILLKLGgygflrfSWPLFPAASEYFAP-LIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVP 315
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 53-219 8.71e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.06  E-value: 8.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  53 IEAATKYFLVQATASALMLFSSMTNAQFTGQWDITQL---THPPS-------CLLLTTAIAIKLGLTPFHFWFPEVLQGS 122
Cdd:MTH00226 181 MQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLascSHVVSeqtqkwiFLGIFLAMAVKIPIFPFHIWLPKAHVEA 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 123 PLTTALLLS-TAMKLPPTA-------ILLLTSHSLNPTLLtTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTaii 194
Cdd:MTH00226 261 PVAGSVLLAgILLKLGGYGlvrlswpILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVS--- 336

                        170       180
                 ....*....|....*....|....*
gi 927372450 195 iynpkLTLLTfYTYILMTTSIFLTM 219
Cdd:MTH00226 337 -----ITLVT-HDIIGLTGSIFIML 355
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-272 1.04e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 40.97  E-value: 1.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  96 LLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTA-MKLPPTAILLLTSHSLNPTL-----LTTLSIMSIALGGWMG 169
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 170 LNQTQTRKILAFSSISHLG--------WMTAIIIYNPKLTLLTF-------YTYILMTTSIFLTMNT----TNTLKLSTL 230
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLvgglyhlLNHSLFKSVLFLGAGSvwfrTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 927372450 231 MTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-284 1.18e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 40.57  E-value: 1.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  11 LSLLLGTTITITSNHWMMaWTGLEINTLAIIPLISKPHHPRAIEAATKYF-LVQATASALMLFSSMTNAQFTGQWDITQ- 88
Cdd:PRK06589 124 LTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLkILMISALLLFLPAVILIYTKTGNLDFVSg 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  89 --LTHPPSCLLLTTAIA--IKLGLTPFHFWFPEVLQGSPLTTALLLSTAM----KLPPTAILLLTSHSLNPT-------L 153
Cdd:PRK06589 203 glFSKNQSIILLLMFIYgiAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQrifaefnW 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 154 LTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGW--MTAIIIYNPKLTLLTFY--TYILMTTSIFLTMNTTNTLK--- 226
Cdd:PRK06589 283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHlvSHSFAKICLFYSMGSIYSLKked 362

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 927372450 227 -LSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTKQETTTVATIISM 284
Cdd:PRK06589 363 qVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVML 421
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 1.54e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.48  E-value: 1.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  55 AATKYFLVQATASALMLFSSMTNAQFTGQWDITQLTHPP-----SCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALL 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 130 LSTAM-KLPPTAILLLTSHSLNP-----TLLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLG-WMTAIIIY------ 196
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiILMGIGLYvifgvy 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 197 -NPKLTLLT-------------FYTYILMTT-SIFLTMNTTNTLKLSTLMTSwtkTPMLNTTLMLTLLSLAGLPPLTGFL 261
Cdd:PRK08667 323 gLDTLALLAlggalfhslnhalFKSLLFLTAgSVVHATGTRNIEKMGGLVKL---MPYTSALFLVGAVSIAALPPFNGFA 399


                 ....*....
gi 927372450 262 PKWLIIQEL 270
Cdd:PRK08667 400 SELLLYESF 408
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-268 5.98e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.39  E-value: 5.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  53 IEAATKYFLVQATASALML---------FSSMTNAQFTGQwdITQLTHPPS----CLLLTTAIAIKLGLTPFhFWFPEVL 119
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLlgigllygtFGTLNMAHIAMR--LNDMGDTATlttiALLFLLAFGMKAALFPF-MWLPAAY 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 120 QGSPLTTALLLSTAMK------LPPTAILLLTSHS-LNPTLLTTLSIMSIALGGWMGLNQTQTRKILAFSSISHLGWMTA 192
Cdd:PRK12663 234 HTPNTEVAALFAALLTkvgiyaLIRVFTLLFPQEReLLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILL 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 193 -IIIYNPK-LTLLTFY---TYILMTTSIFLT---MNTTNTLKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK12663 314 gLALGTPAgINGAIFYlvhDMVVKTALFLIAgslVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKV 393


                 ....
gi 927372450 265 LIIQ 268
Cdd:PRK12663 394 LLVQ 397
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-271 6.92e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 38.40  E-value: 6.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 105 KLGLtpfHFWFPEVLQGsPLTTALLLSTAMKLPPTAILLLTSHSLNPTLLTTLSIMSI--ALGGW----MGLNQTQTRKI 178
Cdd:MTH00032 241 QLGL---HTWLPDAMEG-PTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITIfgALTAFfaatVGLVQNDLKKV 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 179 LAFSSISHLGWMTAIIIY--NPKLTLLTFYTYILMTTSIFL---------TMNTTNTLKLSTLMTSwtkTPMLNTTLMLT 247
Cdd:MTH00032 317 IAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIG 393

                        170       180
                 ....*....|....*....|....
gi 927372450 248 LLSLAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00032 394 SFSIMGLPYLTGFYSKDLIL-ELT 416
PRK12646 PRK12646
DUF4040 family protein;
92-272 9.26e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 37.81  E-value: 9.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450  92 PPSCLLLTTAIAIKLGLTPFHFWFPEVLQGSPLTTALLLSTAMKLPPTAIL-----LLTSHSLNPTLLTTLSIMSIALGG 166
Cdd:PRK12646 210 IPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLfrftpLLGLSNMYIYIVTFVGLITMLFGS 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372450 167 WMGLNQTQTRKILAFSSISHLGWMTAII------IYNPKLTLLTFYTYIL-------MTTSIF---LTM------NTTNT 224
Cdd:PRK12646 290 ITALKQWDLKGILAYSTISQLGMIMAMVgigggyAQHQQDAIASIYVFVLfaalfhlMNHAIFkcaLFMgvgiidHEAGT 369

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 927372450 225 LKLSTLMTSWTKTPMLNTTLMLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK12646 370 RDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH