|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
5-460 |
0e+00 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 575.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 5 KQSSIQIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQGTVNKVYAELVKETGV 84
Cdd:TIGR01992 1 RKDAKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGPGTVDKVYAALIAETGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 85 GEASKDDVKKASEQNLNPLQRAVKTLADIFIPILPAIVAAGLLLGINNLLTSKGIFFS-RPVIEVYPAWADFTTMVSLIA 163
Cdd:TIGR01992 81 AEVSKEEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMSFGgQTLVEVYPQWAGIYNFINLIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 164 NTSFGFLPALIGWSAVKRFGGNPLLGIVLGLILVNPALINAWDFGK----VEIPTWNLFG-LEIQQIGYQGQVLPILVAS 238
Cdd:TIGR01992 161 ETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQalaeGNIPVWDLFGfFEIQKVGYQGQVLPALLAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 239 YLLARFEQFLNKKIPESIQLLLVAPIALLVIGFLSFIVIGPLTFAIGNALTDGLVGIFDHASWLGGLLYGGFYALLVVTG 318
Cdd:TIGR01992 241 YVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFTSAAWLGGAIFGLLYAPLVITG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 319 MHHTFLAVDLQLQGSaLGGTFLWPMLALSNIAQGSAALAMMFIVKDQKQKGLSLTSGISAYLGITEPAIFGVNIRHRFPF 398
Cdd:TIGR01992 321 LHHMFLAVDLQLIGS-LGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNLKYKFPF 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 925177197 399 IIAMASSSIAGMYISSQGVLGTVGVG-GIPGIFSILREYWLPFAIGMLIVLVLPFVSTLLFAK 460
Cdd:TIGR01992 400 IAAMIGSGLAGLLSGLNGVLANSIGVgGLPGFISIQPQYWPVFAIGMAIAIVVPFVLTIFFSK 462
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
1-464 |
7.23e-123 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 366.70 E-value: 7.23e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 1 MSDVKQSSI-QIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQgTVNKVYAELV 79
Cdd:PRK11007 2 MSKINQQDIdRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGT-EVGDYYKALI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 80 KETGVGEASKDDVKKASEQNLNPLQRAVKTLADIFIPILPAIVAAGLLLGINNLLTSKGIFFSRPVIEVYPAWADFTTMV 159
Cdd:PRK11007 81 ATTGQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMSDGQTLAQMYPFWQTIYDFL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 160 SLIANTSFGFLPALIGWSAVKRFGGNPLLGIVLGLILVNPALINAWDFGKvEIP-TWNlFGL-EIQQIGYQGQVLPILVA 237
Cdd:PRK11007 161 WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQ-QLPeVWD-FGLfSIEKVGYQAQVIPALLA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 238 SYLLARFEQFLNKKIPESIQLLLVAPIALLVIGFLSFIVIGPLTFAIGNALTDG----LVGIFdhaSWLGGLLYGGFYAL 313
Cdd:PRK11007 239 GLALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAvkalMTGSF---APIGAALFGFLYAP 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 314 LVVTGMHHTFLAVDLQLQGSaLGGTFLWPMLALSNIAQGSAALAMMFIVKDQKQKGLSLTSGISAYLGITEPAIFGVNIR 393
Cdd:PRK11007 316 LVITGVHQTTLAIDLQMIQS-MGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLK 394
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 925177197 394 HRFPFIIAMASSSIAGMYI-SSQGVLGTVGVGGIPGIFSILREYWLPFAIGMLIVLVLPFVSTLLFAKMKKK 464
Cdd:PRK11007 395 YRFPMLCAMIGSALAGLICgLNGVMANGIGVGGLPGILSIQPQYWQVYALAMLVAIVVPIVLTSFIYKRKER 466
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
96-460 |
4.48e-82 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 261.42 E-value: 4.48e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 96 SEQNLNPLQRAVKTLADIFIPILPAIVAAGLLLGINNLLTSKGIFfsrpviEVYPAWADFTTMVSLIANTSFGFLPALIG 175
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLL------GEGSFLSGTYQILNAAGDAVFYFLPLLFA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 176 WSAVKRFGGNPLLGIVLGLILVNPALINAWDFGKVeipTWNLFGLEiQQIGYQGQVLPILVASYLLARFEQFLNKKIPES 255
Cdd:COG1263 75 IGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVAGG---YISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 256 IQLLLVAPIALLVIGFLSFIVIGPLTFAIGNALTDGLVGIFDHASWLGGLLYGGFYALLVVTGMHHTFLAVDLQLQGSaL 335
Cdd:COG1263 151 LGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGG-T 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 336 GGTFLWPMLALSNIAQGSAALAMMFIVK-DQKQKGLSLTSGISAYL-GITEPAIFGVNIRHRFPFIIAMASSSIAGMYIS 413
Cdd:COG1263 230 GDDGLFPILAAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAG 309
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 925177197 414 S-QGVLGTVGVGGIPGIFSILRE---YWLPFAIGMLIVLVLPFVSTLLFAK 460
Cdd:COG1263 310 LlGVKAFSFGVGGLIDFPSILNPgatNLLLYLIGLVIAFVYYFVFTFLIGR 360
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
112-403 |
8.59e-33 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 126.69 E-value: 8.59e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 112 DIFIPILPAIVAAGLLLGInnllTSKGIFFSRPVIEVYPAWADFTTMVSLIANTSFGFLPALIGWSAVKRF-GGNPLLGI 190
Cdd:pfam02378 2 DGFMPPIPLLIAGGILLGL----GNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 191 VLGLILVNPALINAWDFGKVEIP---TWNLFGLEIQQIGYQGQVLPILVASYLLARFEQFLNKKIPESIQLLLVAPIALL 267
Cdd:pfam02378 78 AGLIGLLSFNLAAAISVALTAAGlsgGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 268 VIGFLSFIVIGPLTFAIGNALTDGLVG----IFDHASWLGGLLYGGFYALLVVTGMHHTFLAV-------------DLQL 330
Cdd:pfam02378 158 ITGFVTLLVIGPVLGLIWPAIQGGLNAlgllLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIfwflpiggsnpiaNQQA 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 925177197 331 QGSALGGTFLWP-MLALSNIAQGSAALAMMFIVKDQKQKG-LSLTSGISAYLGITEPAIFGVNIRHRFPFIIAMA 403
Cdd:pfam02378 238 YGAGAAHILTGGfDVMFGGPGATLALYAAAFLFKKSKVKKlLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAI 312
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
10-83 |
8.72e-31 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 113.78 E-value: 8.72e-31
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 925177197 10 QIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQGtVNKVYAELVKETG 83
Cdd:cd00212 6 DILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPG-VADVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
5-460 |
0e+00 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 575.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 5 KQSSIQIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQGTVNKVYAELVKETGV 84
Cdd:TIGR01992 1 RKDAKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGPGTVDKVYAALIAETGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 85 GEASKDDVKKASEQNLNPLQRAVKTLADIFIPILPAIVAAGLLLGINNLLTSKGIFFS-RPVIEVYPAWADFTTMVSLIA 163
Cdd:TIGR01992 81 AEVSKEEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMSFGgQTLVEVYPQWAGIYNFINLIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 164 NTSFGFLPALIGWSAVKRFGGNPLLGIVLGLILVNPALINAWDFGK----VEIPTWNLFG-LEIQQIGYQGQVLPILVAS 238
Cdd:TIGR01992 161 ETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQalaeGNIPVWDLFGfFEIQKVGYQGQVLPALLAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 239 YLLARFEQFLNKKIPESIQLLLVAPIALLVIGFLSFIVIGPLTFAIGNALTDGLVGIFDHASWLGGLLYGGFYALLVVTG 318
Cdd:TIGR01992 241 YVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFTSAAWLGGAIFGLLYAPLVITG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 319 MHHTFLAVDLQLQGSaLGGTFLWPMLALSNIAQGSAALAMMFIVKDQKQKGLSLTSGISAYLGITEPAIFGVNIRHRFPF 398
Cdd:TIGR01992 321 LHHMFLAVDLQLIGS-LGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNLKYKFPF 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 925177197 399 IIAMASSSIAGMYISSQGVLGTVGVG-GIPGIFSILREYWLPFAIGMLIVLVLPFVSTLLFAK 460
Cdd:TIGR01992 400 IAAMIGSGLAGLLSGLNGVLANSIGVgGLPGFISIQPQYWPVFAIGMAIAIVVPFVLTIFFSK 462
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
3-458 |
7.19e-166 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 476.02 E-value: 7.19e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 3 DVKQSSIQIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQGTVNKVYAELVKET 82
Cdd:TIGR01996 1 NYQQVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTGVVNKVYDEIVKLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 83 GVGEASKDDVKKASEQNLNPLQRAVKTLADIFIPILPAIVAAGLLLGINNLLTSKGIFFSRpVIEVYPAWADFTTMVSLI 162
Cdd:TIGR01996 81 GLSESSTSEQKAEAAKKMNPFQRFARTLSDIFVPIIPAIVATGLLMGLNGMLTAFGLFGLS-GVSVAPIPEGLAEMINVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 163 ANTSFGFLPALIGWSAVKRFGGNPLLGIVLGLILVNPALINAWDFGK--VEIPTWNLFGLEIQQIGYQGQVLPILVASYL 240
Cdd:TIGR01996 160 TSTAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLPNAYGVAAgtATGKAWNIFGLHIPVVGYQGTVLPVLVAVWI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 241 LARFEQFLNKKIPESIQLLLVAPIALLVIGFLSFIVIGPLTFAIGNALTDGLVGIFDHASWLGGLLYGGFYALLVVTGMH 320
Cdd:TIGR01996 240 LAKIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPGGLGGLLFGGLYSLIVITGIH 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 321 HTFLAVDLQLQGS-ALGGTFLWPMLALSNIAQGSAALAMMFIVKDQKQKGLSLTSGISAYLGITEPAIFGVNIRHRFPFI 399
Cdd:TIGR01996 320 HSFHAIETQLLANtKTGGNFLFPIASMANVAQGGAALAVFFKTKDKKLKGLAIPSGLSALLGITEPAIFGVNLRYRKPFI 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 925177197 400 IAMASSSIAGMYISS-QGVLGTVGVGGIPGIFSIL--REYWLPFAIGMLIVLVLPFVSTLLF 458
Cdd:TIGR01996 400 AALIGGAIGGAYVVLfHVAATAYGLTGIPGFLSILpsGINLLHYIVGMLIAFAVAFIATLLL 461
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
1-464 |
7.23e-123 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 366.70 E-value: 7.23e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 1 MSDVKQSSI-QIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQgTVNKVYAELV 79
Cdd:PRK11007 2 MSKINQQDIdRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGT-EVGDYYKALI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 80 KETGVGEASKDDVKKASEQNLNPLQRAVKTLADIFIPILPAIVAAGLLLGINNLLTSKGIFFSRPVIEVYPAWADFTTMV 159
Cdd:PRK11007 81 ATTGQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMSDGQTLAQMYPFWQTIYDFL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 160 SLIANTSFGFLPALIGWSAVKRFGGNPLLGIVLGLILVNPALINAWDFGKvEIP-TWNlFGL-EIQQIGYQGQVLPILVA 237
Cdd:PRK11007 161 WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQ-QLPeVWD-FGLfSIEKVGYQAQVIPALLA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 238 SYLLARFEQFLNKKIPESIQLLLVAPIALLVIGFLSFIVIGPLTFAIGNALTDG----LVGIFdhaSWLGGLLYGGFYAL 313
Cdd:PRK11007 239 GLALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAvkalMTGSF---APIGAALFGFLYAP 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 314 LVVTGMHHTFLAVDLQLQGSaLGGTFLWPMLALSNIAQGSAALAMMFIVKDQKQKGLSLTSGISAYLGITEPAIFGVNIR 393
Cdd:PRK11007 316 LVITGVHQTTLAIDLQMIQS-MGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLK 394
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 925177197 394 HRFPFIIAMASSSIAGMYI-SSQGVLGTVGVGGIPGIFSILREYWLPFAIGMLIVLVLPFVSTLLFAKMKKK 464
Cdd:PRK11007 395 YRFPMLCAMIGSALAGLICgLNGVMANGIGVGGLPGILSIQPQYWQVYALAMLVAIVVPIVLTSFIYKRKER 466
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
5-466 |
7.48e-91 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 288.48 E-value: 7.48e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 5 KQSSIQIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQgTVNKVYAELVketGV 84
Cdd:TIGR01995 2 QDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGN-DVNDVYQALM---DV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 85 GEASKDDVKKASEQNLNPLQRAVKTLADIFIPILPAIVAAGLLLGINNLLTSKGIFFSRPviEVYpawadftTMVSLIAN 164
Cdd:TIGR01995 78 LGLDDQAEDDDSKGKKSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADS--QTY-------QILNAMGD 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 165 TSFGFLPALIGWSAVKRFGGNPLLGIVLGLILVNPALINAWDFGKveipTWNLFGLEIQQIGYQGQVLPILVASYLLARF 244
Cdd:TIGR01995 149 AVFYFLPILLAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGSGK----PVTFFGIPVTLMSYSSSVIPVILAVWLMSYV 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 245 EQFLNKKIPESIQLLLVAPIALLVIGFLSFIVIGPLTFAIGNALTDGLVGIFDHASWLGGLLYGGFYALLVVTGMHHTFL 324
Cdd:TIGR01995 225 EKFLKKVIPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAMI 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 325 AVDLQLQGSALGGTFLWPMLALSNIAQGSAALAMMFIVKDQKQKGLSLTSGISAYLGITEPAIFGVNIRHRFPFIIAMAS 404
Cdd:TIGR01995 305 PIVINNIATQGFDPLILPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAMIG 384
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 405 SSIAGMYISsqGVLGTVGVGGIPGIFSI--------LREYWLpFAIGMLIVLVLPFVSTLLFAKMKKKDV 466
Cdd:TIGR01995 385 GAVGGAIIG--IGSVKAFTAFAPGLLGLpmfinpsdGANFIS-ALIAIVISFVVSFVLTYFIGFKDQEDV 451
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
96-460 |
4.48e-82 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 261.42 E-value: 4.48e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 96 SEQNLNPLQRAVKTLADIFIPILPAIVAAGLLLGINNLLTSKGIFfsrpviEVYPAWADFTTMVSLIANTSFGFLPALIG 175
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLL------GEGSFLSGTYQILNAAGDAVFYFLPLLFA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 176 WSAVKRFGGNPLLGIVLGLILVNPALINAWDFGKVeipTWNLFGLEiQQIGYQGQVLPILVASYLLARFEQFLNKKIPES 255
Cdd:COG1263 75 IGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVAGG---YISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 256 IQLLLVAPIALLVIGFLSFIVIGPLTFAIGNALTDGLVGIFDHASWLGGLLYGGFYALLVVTGMHHTFLAVDLQLQGSaL 335
Cdd:COG1263 151 LGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGG-T 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 336 GGTFLWPMLALSNIAQGSAALAMMFIVK-DQKQKGLSLTSGISAYL-GITEPAIFGVNIRHRFPFIIAMASSSIAGMYIS 413
Cdd:COG1263 230 GDDGLFPILAAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAG 309
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 925177197 414 S-QGVLGTVGVGGIPGIFSILRE---YWLPFAIGMLIVLVLPFVSTLLFAK 460
Cdd:COG1263 310 LlGVKAFSFGVGGLIDFPSILNPgatNLLLYLIGLVIAFVYYFVFTFLIGR 360
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
163-446 |
5.19e-72 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 229.51 E-value: 5.19e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 163 ANTSFGFLPALIGWSAVKRFGGNPLLGIVLGLILVNPALINAWDFGkveIPTW-NLFGLEIQQIGYQGQVLPILVASYLL 241
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVG---AQAVgNFFGFEIAKVGYTGVVGPIIVGAIAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 242 ARFEQFLNKKIPESIQLLLVAPIALLVIGFLSFIVIGPLTFAIGN-ALTDGLVGIFDHASWLGGLLYGGFYALLVVTGMH 320
Cdd:TIGR00852 78 ALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPvGISALLHWLYSAGGALGGAIFGFLYRLLVPTGLH 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 321 HTFLAVDLQLQGSA--LGGTFLWPMLALSNIAQGSAALAMMFIVKDQKQKGLSLTSGISAYLGITEPAIFGVNIRHRFPF 398
Cdd:TIGR00852 158 HIFYAIFIQLIAGGtvIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPF 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 925177197 399 IIAMASSSIAGMYISS-QGVLGTVGVGGIPGIFSI---LREYWLPFAIGMLI 446
Cdd:TIGR00852 238 VAGLIGSALLTAFLTGiTEPLEFLFLFGAPGLYSIhavLAGSIFTVAIGMGI 289
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
10-458 |
5.30e-52 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 185.69 E-value: 5.30e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 10 QIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQ----IDVVKgsfsTNGQFQVVIGQgTVNKVYAELVKETGVG 85
Cdd:PRK09824 9 EIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKnpgvIMVVE----SGGQFQVVIGN-HVADVFLAVNSVAGLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 86 EASKDDVKKASEQNLnpLQRAVKTLADIFIPILPAIVAAglllginnlltskGIFFSRPVIEVYPAWADFTTMVSLI--- 162
Cdd:PRK09824 84 EKAQQAPENDKKGNL--LNRFIDVISGIFTPLIGVMAAT-------------GILKGMLALALTFGWTTEQSGTYKIlfa 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 163 -ANTSFGFLPALIGWSAVKRFGGNPLLGIVLGLILVNPALINAWDFGK-VEIPTWNLFGLEIQQIGYQGQVLPILVASYL 240
Cdd:PRK09824 149 aSDALFFFFPIILGYTAGKKFGGNPFTAMVIGGALVHPLMIAAFEAGQkADALGLDFLGIPVTLLNYSSSVIPIIFSAWL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 241 LARFEQFLNKKIPESIQLLLVAPIALLVIGFLSFIVIGPLTFAIGNALTDGLVGIFDHASWLGGLLYGGFYALLVVTGMH 320
Cdd:PRK09824 229 CSILERRLNAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLH 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 321 HTFlaVDLQLQG-SALGGTFLWPMLALSNIAQGSAALAMMFIVKDQKQKGLSLTSGISAYLGITEPAIFGVNIRHRFPFI 399
Cdd:PRK09824 309 WGL--VPLMINNlTVLGHDTMLPLLMPAVMAQVGAALGVFLCTRDAQKKVVAGSAFLAGLFGITEPAVYGVNLPLKRPFI 386
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 925177197 400 IAMASSSIAGMYISsqGVLGTVGVGGIPGIFSILR---------EYWLPFaIGMLIVLVLPFVSTLLF 458
Cdd:PRK09824 387 FGCISGALGAAIIG--YAQTKVYSFGLPSIFTFMQtipptgidfTVWASV-IGTVIAIGCAFVGTVMF 451
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
10-458 |
7.36e-43 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 158.04 E-value: 7.36e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 10 QIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQgTVNKVYAELVKETGVGEASK 89
Cdd:PRK09796 11 SVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGN-TVSQAFQEVVSLLPGDMQPA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 90 DDVKKASEQnlnpLQRAVKTLADIFI----PILPAIVAAGLLLGINNLLTSKGIFfsrpvievyPAWADFTTMVSLIANT 165
Cdd:PRK09796 90 QPVGKPKLT----LRRIGAGILDALIgtmsPLIPAIIGGSMVKLLAMILEMSGVL---------TKGSPTLTILNVIGDG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 166 SFGFLPALIGWSAVKRFGGNPLLGIVLGLILVNPALIN----AWDFGKVEiptwnLFGLEIQQIGYQGQVLPILVASYLL 241
Cdd:PRK09796 157 AFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIElmakAAQGEHVE-----FALIPVTAVKYTYTVIPALVMTWCL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 242 ARFEQFLNKKIPESIQLLLVAPIALLVIGFLSFIVIGPLTFAIGNALTDGLVGIFDHASWLGGLLYGGFYALLVVTGMHH 321
Cdd:PRK09796 232 SYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHR 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 322 TFLAVDLQLQGSALGGTFLWPMLALSNIAQGSAALAMMFIVKDQKQKGLSLTSGISAYL-GITEPAIFGVNIRHRFPFII 400
Cdd:PRK09796 312 VFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMaGISEPALYGVAIRLKRPLIA 391
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 925177197 401 AMASSSIAGMYisSQGVLGTVGVGGIPGIFSILREY---------WLpFAIgMLIVLVLPFVSTLLF 458
Cdd:PRK09796 392 SLISGFICGAV--AGMAGLASHSMAAPGLFTSVQFFdpanpmsivWV-FAV-MALAVVLSFILTLLL 454
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
1-412 |
2.42e-38 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 145.59 E-value: 2.42e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 1 MSDVKQSSI-QIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQG---TVNKVYA 76
Cdd:PRK09586 1 MAKISSELLnTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGPGkaqRAAKAMN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 77 ELVKETGVGEASKDDVKKASEQNL-----NPLQRAVKTLADIFIPILPAIVAAGLLLGINNLLTSKGIFFSRPvievyPA 151
Cdd:PRK09586 81 ELLGEAAAPVQDLAEIAAQNKRQLkakqtSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVPADA-----QG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 152 W-ADFTTMVSLIANTSFGFLPALIGWSAVKRFGG---NPLLGIVLGLILVNPALINAWdFGKVEiptwNLFGLEIQQigy 227
Cdd:PRK09586 156 TlPDALNYMKVFSKGLFTFLSILIGYNAQQAFGGtgvNGAIIASLFLLGYNPAATTGY-YAGFH----DFFGLPIDP--- 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 228 QGQVLPILVASYLLARFEQFLNKKIPESIQLLLVAPIALLVIGFLSFIVIGPltfaIGNALTDGLVGIFDH--ASWLGGL 305
Cdd:PRK09586 228 RGNIIGVLIAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMP----LGGWLFEGMSWLFMHlnSNPFGCA 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 306 LYGGFYALLVVTGMHHTFLAVDLQLQgSALGGTFLWPMLALSNIAQGSAALAMMFivkdQKQKGLSLTSG-----ISAYL 380
Cdd:PRK09586 304 VLAGLFLIAVVFGVHQGFIPVYFALM-DSQGFNSLFPILAMAGAGQVGAALALYW----RAQKHSALRTQvkgaiIPGLL 378
|
410 420 430
....*....|....*....|....*....|..
gi 925177197 381 GITEPAIFGVNIRHRFPFIIAMASSSIAGMYI 412
Cdd:PRK09586 379 GVGEPLIYGVTLPRMKPFVTACLGGAAGGFFI 410
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
112-403 |
8.59e-33 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 126.69 E-value: 8.59e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 112 DIFIPILPAIVAAGLLLGInnllTSKGIFFSRPVIEVYPAWADFTTMVSLIANTSFGFLPALIGWSAVKRF-GGNPLLGI 190
Cdd:pfam02378 2 DGFMPPIPLLIAGGILLGL----GNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 191 VLGLILVNPALINAWDFGKVEIP---TWNLFGLEIQQIGYQGQVLPILVASYLLARFEQFLNKKIPESIQLLLVAPIALL 267
Cdd:pfam02378 78 AGLIGLLSFNLAAAISVALTAAGlsgGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 268 VIGFLSFIVIGPLTFAIGNALTDGLVG----IFDHASWLGGLLYGGFYALLVVTGMHHTFLAV-------------DLQL 330
Cdd:pfam02378 158 ITGFVTLLVIGPVLGLIWPAIQGGLNAlgllLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIfwflpiggsnpiaNQQA 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 925177197 331 QGSALGGTFLWP-MLALSNIAQGSAALAMMFIVKDQKQKG-LSLTSGISAYLGITEPAIFGVNIRHRFPFIIAMA 403
Cdd:pfam02378 238 YGAGAAHILTGGfDVMFGGPGATLALYAAAFLFKKSKVKKlLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAI 312
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
10-83 |
8.72e-31 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 113.78 E-value: 8.72e-31
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 925177197 10 QIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQGtVNKVYAELVKETG 83
Cdd:cd00212 6 DILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPG-VADVYKEAIKLLG 78
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
5-82 |
5.62e-27 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 103.27 E-value: 5.62e-27
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 925177197 5 KQSSIQIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDvVKGSFSTNGQFQVVIGQGtVNKVYAELVKET 82
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLG-VKGVVKNGGQVQVIIGPG-VDKVADEIEKLL 76
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
29-112 |
3.70e-25 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 98.58 E-value: 3.70e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 925177197 29 TRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQGTVNKVYAELVKE-TGVGEASKDD---VKKASEQNLNPLQ 104
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTGNVNKVDACITRLrVGVADVSKVDdavLKKLGAHGVNPLQ 80
|
....*...
gi 925177197 105 RAVKTLAD 112
Cdd:TIGR00826 81 RAVQVISG 88
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
6-80 |
2.58e-21 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 95.10 E-value: 2.58e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 925177197 6 QSSIQIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVKGSFSTNGQFQVVIGQGTVNKVYAELVK 80
Cdd:PRK14905 276 EIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGAGIVEKIHEEMKA 350
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
10-40 |
7.44e-13 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 62.39 E-value: 7.44e-13
10 20 30
....*....|....*....|....*....|.
gi 925177197 10 QIVKAIGGKDNIAAATHCVTRLRLALKDEGK 40
Cdd:pfam00367 2 EILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
11-67 |
1.92e-07 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 48.51 E-value: 1.92e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 925177197 11 IVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDvVKGSFSTNGQFQVVIG 67
Cdd:TIGR00826 33 QIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLG-AHGVNPLQRAVQVISG 88
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
11-67 |
8.02e-06 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 48.19 E-value: 8.02e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 925177197 11 IVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDVVkGSFSTNGQ-FQVVIG 67
Cdd:PRK10110 455 ILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDNRAI-GVVQLNQHnLQVVIG 511
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
2-55 |
3.12e-05 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 46.25 E-value: 3.12e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 925177197 2 SDVKQSSIQIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQID----VVKGS 55
Cdd:PRK11089 396 TGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGaagvVVAGS 453
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
11-67 |
3.02e-04 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 41.24 E-value: 3.02e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 925177197 11 IVKAIGGKDNIAAATHCVTRLRLALKDEGK-VDQEALDQIDvVKGSFSTNGQFQVVIG 67
Cdd:PRK09702 76 ILQALGGVGNISSINNCATRLRIALHDMSQtLDDEVFKKLG-AHGVFRSGDAIQVIIG 132
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
4-67 |
6.55e-04 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 42.17 E-value: 6.55e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 925177197 4 VKQSSIQIVKAIGGKDNIAAATHCVTRLRLALKDEGKVDQEALDQIDvVKGSFSTNGQ-FQVVIG 67
Cdd:PRK10255 389 LTQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRLG-ASGVVKLNKQtIQVIVG 452
|
|
| |
