|
Name |
Accession |
Description |
Interval |
E-value |
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1-792 |
0e+00 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 1243.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK07003 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEWPEAADLRRFAETLS 320
Cdd:PRK07003 241 LGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 321 PEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFEPAVGAGSAPGGQPSVPPR------AVPAPRAAAAPTAAAAK 394
Cdd:PRK07003 321 PEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAFEPAVTGGGAPGGGVPARVAgavpapGARAAAAVGASAVPAVT 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 395 PVSATPAGAA---RPQAAAPAAPAAPVARSAPAQSSDEAERPAAKPPAVQSPAEAAAPIPAAADAQAIELP-QPETKAAP 470
Cdd:PRK07003 401 AVTGAAGAALapkAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPaDSGSASAP 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 471 AGDMPPPTRKEPEPPAV----------------AAVQRNDEPAPQAEPAPRAASPEPAAVRPAARAGGAAAALDVLRNAG 534
Cdd:PRK07003 481 ASDAPPDAAFEPAPRAAapsaatpaavpdarapAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAG 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 535 MRVSSDRGGRAGATAKPAAAQPAAEKPAAPRPAVQVPTPRAAARAPQAA-----------ESRQPSPPWEDIPPDDYVPL 603
Cdd:PRK07003 561 MRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPpngaaraeqaaESRGAPPPWEDIPPDDYVPL 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 604 SADEMFGGSDDSFVPVFDSGPDDVRVTPKPAEtRPAAPIDTRPLPPAIALDPIGFDGEWPALAARLPLKGVAYQLAFNSE 683
Cdd:PRK07003 641 SADEGFGGPDDGFVPVFDSGPDDVRVAPKPAD-APAPPVDTRPLPPAIPLDAIGFDGEWPALAARLPLKGVAYQLAFNSE 719
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 684 LTAVDASTLKLSVPVPQYADAAQVTKLKAALADALGKPVEVSVEVGPARRTAAALDAAARAARQREAEQEIHGDPFVQQL 763
Cdd:PRK07003 720 LTAADGGTLKLAVPVPQYADAAQVAKLKAALADALGKPVEVAVEVGPARRTAAALDAAERAKRQREAEQEIHADPFVQQL 799
|
810 820 830
....*....|....*....|....*....|.
gi 924601414 764 VRDFGARIVEGSVRPLA--DSAPDGVPPTLH 792
Cdd:PRK07003 800 LREFGASIVEGSIRPVAaeAGAPDGASPTLH 830
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1-780 |
0e+00 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 780.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC-----ETGVTSQPCGV 75
Cdd:PRK12323 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCtgadgEGGITAQPCGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 76 CRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA 155
Cdd:PRK12323 81 CRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 156 TTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTES 235
Cdd:PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 236 AVSGMLGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEWPEAADLRRF 315
Cdd:PRK12323 241 AVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADDIRRL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 316 AETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFEPAVGAGSAPggqpsvppravpapraaaaptaaaakP 395
Cdd:PRK12323 321 AGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAFRPGQSGGGAG--------------------------P 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 396 VSAtpagaarpqaaapaapaapvarsapAQSSDEAERPAAKPPAVQSPAEAAAPIPAAadaqaielPQPETKAAPAGDMP 475
Cdd:PRK12323 375 ATA-------------------------AAAPVAQPAPAAAAPAAAAPAPAAPPAAPA--------AAPAAAAAARAVAA 421
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 476 PPTRKEPEPPAVAAVQRNDEPAPQAEPAPRAASPepaaVRPAARAGGAAAALdvlrnagmrvssdrggragatakpaaaq 555
Cdd:PRK12323 422 APARRSPAPEALAAARQASARGPGGAPAPAPAPA----AAPAAAARPAAAGP---------------------------- 469
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 556 paaekpaAPRPAVQVPTPRAAARAPQAAESRQPSPPWEDIPPDDYVPLSADEMFGGSDDSFVPVFDSG---PDDVRVTPK 632
Cdd:PRK12323 470 -------RPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAtadPDDAFETLA 542
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 633 PAETRPAAPIDTRPLPPAIALDP---------IGFDGEWPALAARLPLKGVAYQLAFNSELTAVDASTLKLSVPVPQYAD 703
Cdd:PRK12323 543 PAPAAAPAPRAAAATEPVVAPRPprasasglpDMFDGDWPALAARLPVRGLAQQLARQSELAGVEGDTVRLRVPVPALAE 622
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 924601414 704 AAQVTKLKAALADALGKPVEVSVEVGPARRTAAALDAAARAARQREAEQEIHGDPFVQQLVRDFGARIVEGSVRPLA 780
Cdd:PRK12323 623 AEVVERLQAALTEHFGQPVRVVCEVGAVGATAAAVDAEERAERQRAAEDAIAADPFVQALVRDFGGQVVPGSIQPHA 699
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1-779 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 701.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC-----ETGVTSQPCGV 75
Cdd:PRK14951 1 MSYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCqgpdgQGGITATPCGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 76 CRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA 155
Cdd:PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 156 TTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTES 235
Cdd:PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 236 AVSGMLGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEW-PEAADLRR 314
Cdd:PRK14951 241 AVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATdPEAAEVAR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 315 FAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFEPAVGAGSAPGGQPSVPPravpapraaaaptaaaak 394
Cdd:PRK14951 321 LAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAFKPAAAAEAAAPAEKKTPA------------------ 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 395 pvsatpagaarpqaaapaapaapvarsapaqssdeaeRPAAKPPAVQspaeaaapipaaadaqaielPQPETKAAPAGDM 474
Cdd:PRK14951 383 -------------------------------------RPEAAAPAAA--------------------PVAQAAAAPAPAA 405
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 475 PPPTRKEPEPPAVAAVqrndEPAPQAEPAPRAASPepaavrpaaraggaaaaldvlrnagmrvssdrggragatakpaaa 554
Cdd:PRK14951 406 APAAAASAPAAPPAAA----PPAPVAAPAAAAPAA--------------------------------------------- 436
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 555 qpaaekpaaprpavqVPTPRAAARAPQAAESRQPSPPWEDIPpddyvplsademfggsddsfvpvfdsgpddVRVTPKPA 634
Cdd:PRK14951 437 ---------------APAAAPAAVALAPAPPAQAAPETVAIP------------------------------VRVAPEPA 471
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 635 ETRPAAPIDTRPLPPAIALDPIG--FDGEWPALAARLPLKGVAYQLAFNSELTAVDASTLKLSVPVPQYADAAQVTKLKA 712
Cdd:PRK14951 472 VASAAPAPAAAPAAARLTPTEEGdvWHATVQQLAAAEAITALARELALQSELVARDGDQWLLRVERESLNQPGARERLRA 551
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 924601414 713 ALADALGKPVEVSVEVGPARRTAAALDAAARAARQREAEQEIHGDPFVQQLVRDFGARIVEGSVRPL 779
Cdd:PRK14951 552 ALEAALGHAVRLEVEVGAVTDSPARRNAAARAERQREAEEIIRNDPFVQQLMRDFGAKIVPGSIKPV 618
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
1-373 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 662.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK14969 1 MSYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEWPEAADLRRFAETLS 320
Cdd:PRK14969 241 LGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLLDLAKRLS 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 924601414 321 PEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFEP---AVGAGSAPGGQPS 373
Cdd:PRK14969 321 PEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFRPseqDSGAGRAPGAVPG 376
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1-779 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 647.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK07994 1 MSYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEWPEAA-DLRRFAETL 319
Cdd:PRK07994 241 LGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIElRLRELARTL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 320 SPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFEPAVGAGSAPGGQPSVPPRAVPAPRAAAAPTAAAAKPVSAt 399
Cdd:PRK07994 321 PPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAV- 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 400 pagaarpqaaapaapaapvarsapaqssdeAERPAAKPPAVQSPAEAAAPIPAAADAQAIELPQPETKAAPagdmPPPTR 479
Cdd:PRK07994 400 ------------------------------PPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK----SEPAA 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 480 KEPEPPAVAAVQRNDEPAPQAEPAPRAASPEpaavrpaaraggaaaaldvlrnagmrvssdrggragatakpaaaqpaae 559
Cdd:PRK07994 446 ASRARPVNSALERLASVRPAPSALEKAPAKK------------------------------------------------- 476
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 560 kpaaprpavqvptpraaarapqaaesrqPSPPWEDIPPDDYVPLSAdemfggsddsfvpvfdsgpddvrVTPKpAETRPA 639
Cdd:PRK07994 477 ----------------------------EAYRWKATNPVEVKKEPV-----------------------ATPK-ALKKAL 504
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 640 APIDTRPLPPAIALDPIGFDgEWPALAARLPLKGVAYQLAFNSELTAVDASTLKLSVPvPQYA---DAAQVTKLKAALAD 716
Cdd:PRK07994 505 EHEKTPELAAKLAAEAIERD-PWAALVSQLGLPGLVEQLALNAWKEEHDNGEVCLHLR-PSQRhlnSPRAQQRLAEALSE 582
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 924601414 717 ALGKPVEVSVEVG--PARRTAAALDAAARAARQREAEQEIHGDPFVQQLVRDFGARIVEGSVRPL 779
Cdd:PRK07994 583 LLGRTVELTIEEDdnPAVETPLEWRQRIYEEKLAQAEESIIADPNIQTLRQFFDAELDEDSIRPI 647
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
1-781 |
1.20e-178 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 529.67 E-value: 1.20e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK08691 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEWPEAADLRRFAETLS 320
Cdd:PRK08691 241 IGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTIS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 321 PEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFEPAVGAG-SAPGGQPSVPPRAVPAPRAAAAPTAAAAKPVSAT 399
Cdd:PRK08691 321 GEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFAPLAAAScDANAVIENTELQSPSAQTAEKETAAKKPQPRPEA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 400 pagaarpqaaapaapaapvarsAPAQSSDEAERPAAKPPAVQSPaeaaapipaaadaqaielpQPETKAAPAgDMPPptr 479
Cdd:PRK08691 401 ----------------------ETAQTPVQTASAAAMPSEGKTA-------------------GPVSNQENN-DVPP--- 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 480 kepeppavaavqRNDEPAPQAEPAPRAASPEPAAVRPAARAGGAAAALDVLRNAGMRVSSDRGGRAGATAKPAAAQPAAE 559
Cdd:PRK08691 436 ------------WEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAV 503
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 560 KPAAPRPAVQVPTPRAAARAPQAAESRQ----PSPPWEDIPPddyvplsADEMFGGSDDSFVPVFDSGPddvrvtPKPAE 635
Cdd:PRK08691 504 ETETFAHEAPAEPFYGYGFPDNDCPPEDgaeiPPPDWEHAAP-------ADTAGGGADEEAEAGGIGGN------NTPSA 570
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 636 trpaapidtrplPPaialdPIGFDGEWPALAARLPLK-GVAYQLAFNSELTAVDASTLKLSVPVPQ----YADAAQVTKL 710
Cdd:PRK08691 571 ------------PP-----PEFSTENWAAIVRHFARKlGAAQMPAQHSAWTEYHPDTGLMVLAMTAearaTADKKRLDKI 633
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 924601414 711 KAALADALGKPVEVSVE--VGPARRTAAALDAAARAARQREAEQE-IHGDPFVQQLVRDFGARIVEGSVRPLAD 781
Cdd:PRK08691 634 RDTLAQAYGLQLTLQTQdwRDEAGRETPAMQDKRVQAEDRQKAQAlLEADPAAQKILQAFGAQWQPESLELAAN 707
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
1-357 |
2.78e-167 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 486.24 E-value: 2.78e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVlarkwrPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:COG2812 1 MSYQV------PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEPCGECESCR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDA-ASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159
Cdd:COG2812 75 AIAAGSHPDVIEIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYsanevtesavsg 239
Cdd:COG2812 155 QKLLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQAIAF------------ 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 240 mlGALD-QTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGS-VLDEWPEAADLRRFAE 317
Cdd:COG2812 223 --GLLDrRELLLDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAeLLVNEDERERLQELAR 300
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 924601414 318 TLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLA 357
Cdd:COG2812 301 RLSPERLLRAIQILLEARRELERNVNPRLALEMLLLRLAR 340
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
3-356 |
1.48e-166 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 485.15 E-value: 1.48e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82
Cdd:TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162
Cdd:TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLG 242
Cdd:TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 243 ALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVL-DEWPEAADLRRFAETLSP 321
Cdd:TIGR02397 241 LVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLaVLESEQEFLKELALKLSL 320
|
330 340 350
....*....|....*....|....*....|....*
gi 924601414 322 EQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRML 356
Cdd:TIGR02397 321 EFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
1-360 |
6.32e-156 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 478.45 E-value: 6.32e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK14949 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 241 LGALDQTYMVRLLDALAAANgpeilaIADEM--SLRSLSFST----ALQDLASLLHRIAWAQFAPGsvldewpeAADL-- 312
Cdd:PRK14949 241 LGSIDEQHVIALLKALTDAD------IGVLMqtCAQVLAFGAdaqeVLRSLLELLHQITLTQFAPA--------AAQQsl 306
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 924601414 313 -----RRFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFEP 360
Cdd:PRK14949 307 yseqiRAFAEQLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVP 359
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
3-504 |
2.39e-135 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 417.53 E-value: 2.39e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162
Cdd:PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLG 242
Cdd:PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 243 ALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEWPEA-ADLRRFAETLSP 321
Cdd:PRK14960 242 LIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEInAKILQLSKLISA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 322 EQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFEP------AVGAGSAPGGQpsvppravpapraaaaptaaaakp 395
Cdd:PRK14960 322 QDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFRPlapneiLVSEPVQQNGQ------------------------ 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 396 vsatpagaarpqaaapaapAAPVARSAPAQSSDEAERPAAKPPAVQSpaeaaapipaaadAQAIELPQPETKAAPAGDMP 475
Cdd:PRK14960 378 -------------------AEVGLNSQAQTAQEITPVSAVQPVEVIS-------------QPAMVEPEPEPEPEPEPEPE 425
|
490 500
....*....|....*....|....*....
gi 924601414 476 PPTRKEPEPpavaavqrndEPAPQAEPAP 504
Cdd:PRK14960 426 PEPEPEPEP----------EPEPEPEPQP 444
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
1-271 |
2.07e-133 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 407.72 E-value: 2.07e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK05563 1 MMYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240
|
250 260 270
....*....|....*....|....*....|.
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEM 271
Cdd:PRK05563 241 TGSVSQEALDDLVDAIVEGDVAKALKILEEL 271
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
1-360 |
3.11e-131 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 394.95 E-value: 3.11e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK14961 1 MNYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPgsvlDEWPE------AADLRR 314
Cdd:PRK14961 241 LGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFP----KIWNTifiknyKNQIQK 316
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 924601414 315 FAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFEP 360
Cdd:PRK14961 317 IAQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINAIT 362
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
1-361 |
2.53e-128 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 392.94 E-value: 2.53e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK14958 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEwpEAADLRRFAETLS 320
Cdd:PRK14958 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIEN--DSEQLRQLAKLLD 318
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 924601414 321 PEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFEPA 361
Cdd:PRK14958 319 REDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFYPS 359
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
4-272 |
2.51e-125 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 385.93 E-value: 2.51e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 4 QVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83
Cdd:PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163
Cdd:PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGA 243
Cdd:PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGL 241
|
250 260
....*....|....*....|....*....
gi 924601414 244 LDQTYMVRLLDALAAANGPEILAIADEMS 272
Cdd:PRK08451 242 LDPSKLEDFFQAILNQDKEKLFELLKELE 270
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
2-398 |
3.77e-125 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 387.33 E-value: 3.77e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 2 TYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCET-----GVTSQPCGVC 76
Cdd:PRK09111 10 PYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGpdgdgGPTIDLCGVG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT 156
Cdd:PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 157 TDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESA 236
Cdd:PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEA 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 237 VSGMLGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLD------EWPEAA 310
Cdd:PRK09111 250 VRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDpslseaERTRGA 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 311 DlrrFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTL---------------LRMLAFEPAV---GAGSAPGGQP 372
Cdd:PRK09111 330 E---FAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLirlayaadlptpdeaLRRLQEGPPSpggGGGGPPGGGG 406
|
410 420
....*....|....*....|....*.
gi 924601414 373 SVPPRAVPAPRAAAAPTAAAAKPVSA 398
Cdd:PRK09111 407 APGAPAAAAAPGAAAAAPAAGGPAAA 432
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
1-362 |
1.73e-121 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 377.16 E-value: 1.73e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK14965 1 MSYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK14965 81 EITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAEL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHR--IAWAQFAPGSVLD-EWPEAADLRRFAE 317
Cdd:PRK14965 241 LGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNlvVLRAVGEPGDLLDlSEAELAELRAQAA 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 924601414 318 TLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFEPAV 362
Cdd:PRK14965 321 AADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLAPGA 365
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
1-319 |
1.31e-112 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 351.05 E-value: 1.31e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK14953 1 MMYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHR--IAWAQFAPGSVLDEWPEAADLRRFAET 318
Cdd:PRK14953 241 LGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNilLNKSLKNPEEVFQVEDFYRKLEKPLEA 320
|
.
gi 924601414 319 L 319
Cdd:PRK14953 321 L 321
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
1-359 |
3.43e-108 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 341.68 E-value: 3.43e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK14957 1 MSYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK14957 81 AINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAiademSLRSLSFSTALQDlaSLLHRIAWAQFApgSVLDEWPEAAD--------- 311
Cdd:PRK14957 241 LGIIDSEEVYSIINAIIDNDPKAILP-----AIKNLALTESSAD--AVLDRIAEIWFA--CCIYSFTQSLDavndidvdi 311
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 924601414 312 LRRFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAFE 359
Cdd:PRK14957 312 INNILAKISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAFQ 359
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
1-373 |
3.24e-98 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 310.29 E-value: 3.24e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV--------TSQP 72
Cdd:PRK14955 1 MSYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIddadylqeVTEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 73 CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152
Cdd:PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANE- 231
Cdd:PRK14955 161 IFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESe 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 232 ----VTESAVSGMLGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEWP 307
Cdd:PRK14955 241 gegsIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVERP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 924601414 308 EAADLR--RFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAF-EPAVGAGSAPGGQPS 373
Cdd:PRK14955 321 DAVRERyeRDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIgHPAPTAAAAPTGGAQ 389
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
1-507 |
4.98e-96 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 310.97 E-value: 4.98e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-QPCGVCRAC 79
Cdd:PRK14950 1 MTVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKgRPCGTCEMC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159
Cdd:PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSG 239
Cdd:PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 240 MLGALDQTYMVRLLDALAAANGPEilaiademslrslsfstALQDLASLLHriawaqfapgsvldewpEAADLRRFAETL 319
Cdd:PRK14950 241 LLGISGDEEVKALAEALLAKDLKA-----------------ALRTLNAVAA-----------------DGADLRQFTRDL 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 320 SPEQVQLFYQIATVGRAELGLAPDEYA--GFTMTLLRMLAFEPAVGAGSAPGGQPSVPPRAVPAPRAAAAPTAAAAKPVS 397
Cdd:PRK14950 287 VEYLRQVMLLNSGADRSLLDLTADEKAalQKVSQIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALLVPVPAP 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 398 ATpagaarpqaaapaapaapvarsapAQSSDEAERPAAKPPAVQSPAEAAAPIPAAADAQAIELPQPETKAAPAGDMPPP 477
Cdd:PRK14950 367 QP------------------------AKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVP 422
|
490 500 510
....*....|....*....|....*....|
gi 924601414 478 TRKEPEPPAVAAVQRNDEPAPQAEPAPRAA 507
Cdd:PRK14950 423 HTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
1-268 |
1.66e-94 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 308.04 E-value: 1.66e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC--ETGVTSQPCGVCRA 78
Cdd:PRK14948 1 MAYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNClnSDKPTPEPCGKCEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 79 CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158
Cdd:PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 159 PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQaIAYSANEVTESAVS 238
Cdd:PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITPEAVW 239
|
250 260 270
....*....|....*....|....*....|
gi 924601414 239 GMLGALDQTYMVRLLDALAAANgPEILAIA 268
Cdd:PRK14948 240 DLLGAVPEQDLLNLLKALASND-PESLLDS 268
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
6-270 |
1.75e-93 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 301.32 E-value: 1.75e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEG 85
Cdd:PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165
Cdd:PRK14964 83 NHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 166 VLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGALD 245
Cdd:PRK14964 163 IISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVD 242
|
250 260
....*....|....*....|....*
gi 924601414 246 QTYMVRLLDALAAANGPEILAIADE 270
Cdd:PRK14964 243 KHILEDLVEAILLGDAQSALNVFRE 267
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
2-291 |
3.21e-93 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 299.00 E-value: 3.21e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 2 TYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQ-PCGVCRACR 80
Cdd:PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQePCNQCASCK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK06305 163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKA 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLaSLLHR 291
Cdd:PRK06305 243 LGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDL-TLFFR 292
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
4-285 |
3.89e-93 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 299.76 E-value: 3.89e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 4 QVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83
Cdd:PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163
Cdd:PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGA 243
Cdd:PRK14962 162 PTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGL 241
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 924601414 244 LDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDL 285
Cdd:PRK14962 242 IPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQA 283
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
1-286 |
1.07e-91 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 298.61 E-value: 1.07e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK06647 1 MSYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLA 286
Cdd:PRK06647 241 MGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCI 286
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
1-289 |
2.09e-91 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 302.51 E-value: 2.09e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE-TGVTSQPCGVCRAc 79
Cdd:PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCShKTDLLEPCQECIE- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 80 rEIDegRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159
Cdd:PRK07133 82 -NVN--NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSG 239
Cdd:PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEE 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 924601414 240 MLGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLL 289
Cdd:PRK07133 239 LFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLV 288
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
3-271 |
8.01e-88 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 290.14 E-value: 8.01e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCET-GVTSQPCGVCRACRE 81
Cdd:PRK14971 4 YIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNlTADGEACNECESCVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161
Cdd:PRK14971 84 FNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGML 241
Cdd:PRK14971 164 ILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENL 243
|
250 260 270
....*....|....*....|....*....|
gi 924601414 242 GALDQTYMVRLLDALAAANGPEILAIADEM 271
Cdd:PRK14971 244 NILDYDYYFRLTDALLAGKVSDSLLLFDEI 273
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
1-508 |
2.17e-87 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 289.15 E-value: 2.17e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV--------TSQP 72
Cdd:PRK14954 1 MSYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIddpvylqeVTEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 73 CGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152
Cdd:PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEV 232
Cdd:PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 233 TESA-----VSGMLGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEWP 307
Cdd:PRK14954 241 AEKViayqgVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 308 EAADLR--RFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLAF-EPAVGAGSAPGGQPSVPPRAVPAPRA 384
Cdd:PRK14954 321 ESVKERyqQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELvRNDGGVAPSPAGSPDVKKKAPEPDLP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 385 AAAPTAAAAKPvsatpagaarpqaaapaapaapvarsapaqssdeaERPAAKPpavqspaeaaapipaaadaqaIELPQP 464
Cdd:PRK14954 401 QPDRHPGPAKP-----------------------------------EAPGARP---------------------AELPSP 424
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 924601414 465 ETKAAPAGdMPPPTRKEPEPpavaavqrndePAPQAEPAPRAAS 508
Cdd:PRK14954 425 ASAPTPEQ-QPPVARSAPLP-----------PSPQASAPRNVAS 456
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
1-370 |
2.82e-85 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 283.49 E-value: 2.82e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK14959 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK14959 81 KVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLAS------LLHRIAWAQFAPGSVLDEwpEAADLRR 314
Cdd:PRK14959 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVAtwrnlfMLRQAGEAALASLDLPED--EARQWLG 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 924601414 315 FAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLL------RMLAFE---PAVGAGSAPGG 370
Cdd:PRK14959 319 WAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLnlamlpRLMPVEslrPSGGGASAPSG 383
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
1-289 |
3.58e-79 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 266.71 E-value: 3.58e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
Cdd:PRK05896 1 MSEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKT 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 924601414 241 LGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLL 289
Cdd:PRK05896 241 FGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLL 289
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
3-354 |
1.58e-77 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 259.41 E-value: 1.58e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS----QPCGVCRA 78
Cdd:PRK06645 8 YIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITEnttiKTCEQCTN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 79 CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158
Cdd:PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 159 PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANE---VTES 235
Cdd:PRK06645 168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSdniISPQ 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 236 AVSGMLGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEWPEAAD-LRR 314
Cdd:PRK06645 248 VINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDrTKS 327
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 924601414 315 FAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLR 354
Cdd:PRK06645 328 ILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIK 367
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
2-290 |
8.42e-77 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 256.80 E-value: 8.42e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 2 TYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81
Cdd:PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161
Cdd:PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGML 241
Cdd:PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMI 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 924601414 242 GALDQTYMVRLLDALA-AANGPEILAIADEMSLRSLSFSTALQDLASLLH 290
Cdd:PRK14956 244 GYHGIEFLTSFIKSLIdPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTH 293
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
6-508 |
3.26e-72 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 252.60 E-value: 3.26e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI--D 83
Cdd:PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALapG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163
Cdd:PRK07764 85 GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANE-VT-ESAVSgML 241
Cdd:PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEgVTyERAVA-LL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 242 GALDQTYMVRLLDALAAANGPEILAIADEMS----------------LRSLSFSTALQDLASllhriawaqfapgSVLDE 305
Cdd:PRK07764 244 GVTDSALIDEAVDALAAGDGAALFGTVDRVIeaghdprrfaedllerLRDLIVLQAVPDAAE-------------RGLVD 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 306 WPE--AADLRRFAETLSPEQVQLFYQI----------AT---------VGRAELGLAPDEYAGFTMTLLRMLAFEPAVGA 364
Cdd:PRK07764 311 APAdqLDRMRAQAQRLGPAELTRAADVvndgltemrgATsprlllellCARMLLPSASDDERGLLARLERLERRLGVAGG 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 365 GSAPGGQPSVPPRAVPAPRAAAAPTAAAAKPVSATPAgaarpqaaapaapaapvarsapaqssdeAERPAAKPPAVQSPA 444
Cdd:PRK07764 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAA----------------------------APQPAPAPAPAPAPP 442
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 924601414 445 EAAAPIPAAADAQAIELPQPETKAAPAGDMPPPTRKEPEPPAVAAVQRNDEPAPQAEPAPRAAS 508
Cdd:PRK07764 443 SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
5-271 |
1.58e-69 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 233.23 E-value: 1.58e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSqpcgvcracreiDE 84
Cdd:PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDP------------NE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164
Cdd:PRK14970 74 DFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGAL 244
Cdd:PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNIL 233
|
250 260
....*....|....*....|....*..
gi 924601414 245 DQTYMVRLLDALAAANGPEILAIADEM 271
Cdd:PRK14970 234 DYDTYINVTDLILENKIPELLLAFNEI 260
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
4-261 |
8.08e-69 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 237.86 E-value: 8.08e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 4 QVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACreID 83
Cdd:PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC--VA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 84 EGR----FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159
Cdd:PRK14952 79 LAPngpgSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANE-VTESAVS 238
Cdd:PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADThVTYQRAL 238
|
250 260
....*....|....*....|...
gi 924601414 239 GMLGALDQTYMVRLLDALAAANG 261
Cdd:PRK14952 239 GLLGATDVALIDDAVDALAADDA 261
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
6-300 |
1.32e-68 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 235.12 E-value: 1.32e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCeTGVTSQPCGVCRACREIDEG 85
Cdd:PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPCGECESCLAVRRG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165
Cdd:PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 166 VLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSAnEVTESAVSGMLGALD 245
Cdd:PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGT-PVTRKQVEEALGLPP 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 924601414 246 QTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPG 300
Cdd:PRK14963 242 QERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLG 296
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
21-305 |
1.22e-52 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 184.79 E-value: 1.22e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRaCREIDEGRFVDYVEM---DAAS 97
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCH-SRLMAAGNHPDLLELnpeEKSD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 98 NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQ 177
Cdd:COG0470 80 QIGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 178 MPAGHIVSHLErilgEEQItfEPQALRLLARAAQGSMRDALSLTDQAIAYSAnevtesAVSGMLGALDQTYMVRLLDALA 257
Cdd:COG0470 160 PSEEEALAWLR----EEGV--DEDALEAILRLAGGDPRAAINLLQALAGRKE------LLEDLAALLSRDRALELLDALL 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 924601414 258 AANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDE 305
Cdd:COG0470 228 KAEALELLDWLLKWLLDNLPLEYAGEDLARAYEALSEADRRLGRYAND 275
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
26-213 |
1.14e-46 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 164.34 E-value: 1.14e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 26 RALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNR-GVDEM 104
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSiKVDQV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 105 AALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAghiv 184
Cdd:TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSE---- 157
|
170 180
....*....|....*....|....*....
gi 924601414 185 SHLERILGEEQItfEPQALRLLARAAQGS 213
Cdd:TIGR00678 158 EALLQWLIRQGI--SEEAAELLLALAGGS 184
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
20-179 |
8.01e-46 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 161.22 E-value: 8.01e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 20 GQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD--YVEMDAAS 97
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDlvIIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 98 NRgVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQ 177
Cdd:pfam13177 81 IK-IDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKP 159
|
..
gi 924601414 178 MP 179
Cdd:pfam13177 160 LS 161
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
21-220 |
1.78e-31 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 125.81 E-value: 1.78e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD--YVEMDAASN 98
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDvhLVAPDGQSI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 99 RgVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178
Cdd:PRK08058 91 K-KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPL 169
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 924601414 179 PAGHIVSHLErilgEEQItfePQALRLLARAAQGSMRDALSL 220
Cdd:PRK08058 170 PPESLIQRLQ----EEGI---SESLATLLAGLTNSVEEALAL 204
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
15-212 |
9.61e-30 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 122.33 E-value: 9.61e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 15 FASLVGQEHVVRALTHALDGGRLH---------HAYLFTGTRGVGKTTLSRIFAKALNCeTGVTSQPCGVCRACREIDEG 85
Cdd:PRK07940 4 WDDLVGQEAVVAELRAAARAARADvaaagsgmtHAWLFTGPPGSGRSVAARAFAAALQC-TDPDEPGCGECRACRTVLAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 86 RFVD--YVEMDAASnRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163
Cdd:PRK07940 83 THPDvrVVAPEGLS-IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 924601414 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGeeqitFEPQALRLLARAAQG 212
Cdd:PRK07940 162 PTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VDPETARRAARASQG 205
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
9-271 |
1.19e-27 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 114.70 E-value: 1.19e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHaYLFTGTRGVGKTTLSRIFAKAL---NCETGVTSQPCGVC--RACREID 83
Cdd:PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELygdPWENNFTEFNVADFfdQGKKYLV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 84 EG-RFVDYVEMDAASNRGVDEM--AALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
Cdd:PRK12402 87 EDpRFAHFLGTDKRIRSSKIDNfkHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALsLTDQAIAYSANEVTESAVSGM 240
Cdd:PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI-LTLQTAALAAGEITMEAAYEA 245
|
250 260 270
....*....|....*....|....*....|..
gi 924601414 241 LGALDQTYMVR-LLDALAAANGPEILAIADEM 271
Cdd:PRK12402 246 LGDVGTDEVIEsLLDAAEAGDFTDARKTLDDL 277
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
178-242 |
1.16e-24 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 97.58 E-value: 1.16e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 924601414 178 MPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLG 242
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
9-237 |
2.18e-23 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 101.87 E-value: 2.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHaYLFTGTRGVGKTTlsrifakalncetgvtsqpCGVCRAcREIdegrFV 88
Cdd:PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTT-------------------AALALA-REL----YG 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 89 DY-----VEMDAASNRGVD-------EMAALleravyAPV-DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA 155
Cdd:PRK00440 65 EDwrenfLELNASDERGIDvirnkikEFART------APVgGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 156 TTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTdQAIAYSANEVTES 235
Cdd:PRK00440 139 CNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEE 217
|
..
gi 924601414 236 AV 237
Cdd:PRK00440 218 AV 219
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
22-175 |
3.41e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 98.27 E-value: 3.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 22 EHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNR-- 99
Cdd:PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKdi 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 924601414 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNL 175
Cdd:PRK06871 88 GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
36-175 |
3.33e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 92.63 E-value: 3.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-QPCGVCRACREIDEGRFVDYVEMDAASNR----------GVDEM 104
Cdd:PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGhKPCGECMSCHLFGQGSHPDFYEITPLSDEpengrkllqiKIDAV 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 924601414 105 AALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNL 175
Cdd:PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVL 169
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
9-306 |
8.15e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 91.67 E-value: 8.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 9 KWRP---KDFASLVGQEHvvralthaldGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEG 85
Cdd:PRK07993 2 KWYPwlrPDYEQLVGSYQ----------AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 86 RFVDYVEMD---AASNRGVDEMAALLERaVYApvDARF---KVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159
Cdd:PRK07993 72 THPDYYTLTpekGKSSLGVDAVREVTEK-LYE--HARLggaKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREP 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERilgeeQITFEPQALRLLARAAQGSMRDALSLTdQAIAYSANEVTESAVSg 239
Cdd:PRK07993 149 ARLLATLRSRCRLHYLAPPPEQYALTWLSR-----EVTMSQDALLAALRLSAGAPGAALALL-QPERWQQREALCQALA- 221
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 924601414 240 mlGALDQTYMVRLLDALAAANGPEIL-----AIADEMSLRSLSFSTALQDLASLLHRIAwAQFAPG---SVLDEW 306
Cdd:PRK07993 222 --YALPSGDWLSLLPALNHEQAPARLhwlatLLMDALKRQHGAAYVTNQDQPPLVAQLA-NHLSPArlqAILGDV 293
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
32-293 |
1.16e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 90.92 E-value: 1.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 32 LDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM---DAASNRGVDEMAALL 108
Cdd:PRK05707 16 AGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLepeEADKTIKVDQVRELV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 109 ERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLE 188
Cdd:PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQ 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 189 RILGEEQitfEPQALRLLaRAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGALDQTYMVRlldALAAANGPEILAIA 268
Cdd:PRK05707 176 QALPESD---ERERIELL-TLAGGSPLRALQLHEQGVREQRARVLDGVKKLLKQQQSASQLAE---SWLKVPLLLLFDWF 248
|
250 260 270
....*....|....*....|....*....|..
gi 924601414 269 DEMSLRSLSF-------STALQDLASLLHRIA 293
Cdd:PRK05707 249 CDWAHDILRYqltqdeeGLGLADMRKVLQYLA 280
|
|
| DNA_pol3_gamma3 |
pfam12169 |
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, ... |
232-357 |
1.37e-19 |
|
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau.
Pssm-ID: 432379 [Multi-domain] Cd Length: 143 Bit Score: 85.78 E-value: 1.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 232 VTESAVSGMLGALDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVLDEW---PE 308
Cdd:pfam12169 1 VTAAQVRDMLGLADRGRVLDLLEALLEGDAAAALAELRDQYDAGADPVVVLRDLLELIHNLTRLKVAPDAADDLLlpeEE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 924601414 309 AADLRRFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRMLA 357
Cdd:pfam12169 81 RARLAELAEKLSPEVLHRLWQMLLKGIEEVPNAPDPRQAAEMVLLRLAY 129
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
14-213 |
1.08e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 87.65 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALncetgVTSQPCGVCRACReIDEGRFVD---- 89
Cdd:PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL-----LSQGSPSKNIRRR-LEEGNHPDllwv 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 90 ---YVEMDAASNRGVDEMAALLERAVYA----------------PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150
Cdd:PRK07399 76 eptYQHQGKLITASEAEEAGLKRKAPPQirleqireikrflsrpPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGT 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 924601414 151 kFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQAlrLLArAAQGS 213
Cdd:PRK07399 156 -LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPE--LLA-LAQGS 214
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
6-237 |
1.48e-18 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 88.99 E-value: 1.48e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 6 LARKWRPKDFASLVGQEHVV---RALTHALDGGRLHHAyLFTGTRGVGKTTLSRIFAKALNCEtgvtsqpcgvcracrei 82
Cdd:PRK13342 2 LAERMRPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGATDAP----------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 83 degrfvdYVEMDAASNrGVDEMAALLERAVYAPVDARFKVYMIDEVhmltnHAFN-----AMLKTLEEppPHVKFILATT 157
Cdd:PRK13342 64 -------FEALSAVTS-GVKDLREVIEEARQRRSAGRRTILFIDEI-----HRFNkaqqdALLPHVED--GTITLIGATT 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 158 DPQKIPVT--VLSRCLQFNLKQMPAGHIVSHLERILGEEQ---ITFEPQALRLLARAAQGSMRDALSLTDQAiAYSANEV 232
Cdd:PRK13342 129 ENPSFEVNpaLLSRAQVFELKPLSEEDIEQLLKRALEDKErglVELDDEALDALARLANGDARRALNLLELA-ALGVDSI 207
|
....*
gi 924601414 233 TESAV 237
Cdd:PRK13342 208 TLELL 212
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
611-780 |
4.93e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 88.27 E-value: 4.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 611 GSDDSFVPVFDSGPDDVRVTPKPAETRPAAPIDTRPLPPAialdpiGFDGEWPALAARLPLKGVAYQLAFNSELTAVDAS 690
Cdd:PRK14969 361 SEQDSGAGRAPGAVPGVNRTRAVPTAAPAAPAAATPSDRQ------SFNGNWRALVDQLKLSGLARELAQNCELKSFSED 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 691 TLKLSVP-------VPQYADaaqvtKLKAALADALGKPVEVSVEVG-PARRTAAALDAAARAARQREAEQEIHGDPFVQQ 762
Cdd:PRK14969 435 RIELRVPeahkhllDKPYQD-----KLQAALEQHFGRPVQLIFSLGgVSGNTPAELVSREKAERQSQAESAIESDGFVQE 509
|
170
....*....|....*...
gi 924601414 763 LVRDFGARIVEGSVRPLA 780
Cdd:PRK14969 510 LIEDFDATLIPSSIKPIQ 527
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
11-317 |
1.83e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 85.08 E-value: 1.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG-------------VCR 77
Cdd:PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVppptslaidpdhpVAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 78 ACREIDEGRFvdyvemdAASNRGVDEMAALLeRAVYAPVDAR--------------FKVYMIDEVHMLTNHAFNAMLKTL 143
Cdd:PRK07471 94 RIAAGAHGGL-------LTLERSWNEKGKRL-RTVITVDEVRelisffgltaaeggWRVVIVDTADEMNANAANALLKVL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 144 EEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEqitfEPQALRLLARAAQGSMRDALSLTDQ 223
Cdd:PRK07471 166 EEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL----PDDPRAALAALAEGSVGRALRLAGG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 224 aiaysanevtesavsgmlGALD-QTYMVRLLDALAAANGPEILAIADEMSLR----SLSFSTALQD--LASLLHRIAWAQ 296
Cdd:PRK07471 242 ------------------DGLAlYRRLTALLDTLPRLDRRALHALADAAAGRdraaRFALFLDLLDrwLARLARAGARGA 303
|
330 340
....*....|....*....|....*..
gi 924601414 297 FAPGSVLDEWP------EAADLRRFAE 317
Cdd:PRK07471 304 PPPEAVPGEAAllarlaPDARLRRWAE 330
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
18-221 |
2.34e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 84.32 E-value: 2.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR------ACREIDEG------ 85
Cdd:PRK09112 25 LFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADpdpaspVWRQIAQGahpnll 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 86 ---RFVDYVEMDAASNRGVDEmaalLERAVY----APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158
Cdd:PRK09112 105 hitRPFDEKTGKFKTAITVDE----IRRVGHflsqTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHS 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 924601414 159 PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERiLGEEQITFEPQALRLLARaAQGSMRDALSLT 221
Cdd:PRK09112 181 SGRLLPTIRSRCQPISLKPLDDDELKKALSH-LGSSQGSDGEITEALLQR-SKGSVRKALLLL 241
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
36-180 |
9.29e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 79.42 E-value: 9.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-QPCGVCRACREIDEGRFVDYV-----EMDAASNRGVDEMAALLE 109
Cdd:PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDgEPCGTCAACNWFAQGNHPDYRivrpeALAAEAPGAADEAKEADA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 110 RAVYAPVDARFKVYMIDEVHMLTN------------------------HAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165
Cdd:PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDfcgvgthrggarvvvlypaealnvAAANALLKTLEEPPPGTVFLLVSARIDRLLPT 178
|
170
....*....|....*
gi 924601414 166 VLSRCLQFNLkQMPA 180
Cdd:PRK06964 179 ILSRCRQFPM-TVPA 192
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
21-224 |
1.61e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 77.75 E-value: 1.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 21 QEHVVRALTHALDGGRLHHAYLFTGtrGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDyVEMDAASNR- 99
Cdd:PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD-VTVIEPQGQv 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 100 ----GVDEMAALLERAVYapvDARFKVYMIDEVH-MLTNHAfNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFN 174
Cdd:PRK07276 84 iktdTIRELVKNFSQSGY---EGKQQVFIIKDADkMHVNAA-NSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFH 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 924601414 175 L-KQMPAghivshLERILGEEQItFEPQAlRLLARAAQgSMRDALSLTDQA 224
Cdd:PRK07276 160 FpKNEAY------LIQLLEQKGL-LKTQA-ELLAKLAQ-STSEAEKLAQNK 201
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
6-242 |
8.85e-15 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 77.40 E-value: 8.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 6 LARKWRPKDFASLVGQEHVV---RALTHALDGGRLHHAYLFtGTRGVGKTTLSRIFAKALNCEtgvtsqpcgvcracrei 82
Cdd:COG2256 15 LAERMRPRTLDEVVGQEHLLgpgKPLRRAIEAGRLSSMILW-GPPGTGKTTLARLIANATDAE----------------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 83 degrfvdYVEMDAASNrGVDEMAALLERAVYAPVDARFKVYMIDEVhmltnHAFN-----AMLktleeppPHV-----KF 152
Cdd:COG2256 77 -------FVALSAVTS-GVKDIREVIEEARERRAYGRRTILFVDEI-----HRFNkaqqdALL-------PHVedgtiTL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 153 ILATTD--------PqkipvtVLSRCLQFNLKQMPAGHI-------VSHLERILGEEQITFEPQALRLLARAAQGSMRDA 217
Cdd:COG2256 137 IGATTEnpsfevnsA------LLSRCRVFVLKPLSEEDLeqlleraLADDERGLGGYKLELDDEALEALARLADGDARRA 210
|
250 260
....*....|....*....|....*....
gi 924601414 218 LSLTDQAIAYSAN----EVTESAVSGMLG 242
Cdd:COG2256 211 LNALELAVLSAPPdgviEITLELVEEALQ 239
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
31-175 |
6.36e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 73.68 E-value: 6.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 31 ALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETgVTSQPCGVCRACREIDEGRFVDY-------------VEMDAAS 97
Cdd:PRK06090 18 GLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN-YQSEACGFCHSCELMQSGNHPDLhvikpekegksitVEQIRQC 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 924601414 98 NRGVDEMAALleravyapvdARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNL 175
Cdd:PRK06090 97 NRLAQESSQL----------NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV 164
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
115-214 |
1.65e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 71.75 E-value: 1.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 115 PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFnlkqmpaghivshleRILGEE 194
Cdd:PRK05917 91 PYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSI---------------HIPMEE 155
|
90 100
....*....|....*....|
gi 924601414 195 QITFEPQALRLLARAAQGSM 214
Cdd:PRK05917 156 KTLVSKEDIAYLIGYAQGKE 175
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
14-178 |
3.90e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 71.22 E-value: 3.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFA-KALNcetgvtsqpcgvcracreIDEGR-FVDYV 91
Cdd:PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIAlKILG------------------KSQQReYVDII 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 92 EMDAASNR--GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169
Cdd:PRK05564 64 EFKPINKKsiGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143
|
....*....
gi 924601414 170 CLQFNLKQM 178
Cdd:PRK05564 144 CQIYKLNRL 152
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
9-265 |
1.16e-12 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 71.11 E-value: 1.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 9 KWRPKDFASLVGQEHVVRALT---HALDGGRLHHAYLFTGTRGVGKTTLsrifAKALncetgvtsqpcgvcraCREIDeg 85
Cdd:PRK04195 7 KYRPKTLSDVVGNEKAKEQLRewiESWLKGKPKKALLLYGPPGVGKTSL----AHAL----------------ANDYG-- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 86 rfVDYVEMDAASNRGVDEMAALLERA-VYAPV-DARFKVYMIDEVHMLTNHA----FNAMLKTLEEPPPHVkfILATTDP 159
Cdd:PRK04195 65 --WEVIELNASDQRTADVIERVAGEAaTSGSLfGARRKLILLDEVDGIHGNEdrggARAILELIKKAKQPI--ILTANDP 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 160 QKIP-VTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDAlsLTD-QAIAYSANEVTESAV 237
Cdd:PRK04195 141 YDPSlRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSA--INDlQAIAEGYGKLTLEDV 218
|
250 260
....*....|....*....|....*....
gi 924601414 238 SgMLGALDQTY-MVRLLDALAAANGPEIL 265
Cdd:PRK04195 219 K-TLGRRDREEsIFDALDAVFKARNADQA 246
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
19-170 |
2.38e-12 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 65.25 E-value: 2.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 19 VGQEHVVRALTHALDGGRLHHaYLFTGTRGVGKTTLSRIFAKALNcETGVTsqpcgVCracrEIDEGRFvdYVEMDAASN 98
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELF-RPGAP-----FL----YLNASDL--LEGLVVAEL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 99 RGVDEMAALLERAVYAPVDarfkVYMIDEVHMLTNHAFNAMLKTLEE------PPPHVKFILATTDP--QKIPVTVLSRC 170
Cdd:cd00009 68 FGHFLVRLLFELAEKAKPG----VLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNRPllGDLDRALYDRL 143
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
9-218 |
4.84e-11 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 64.75 E-value: 4.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHaYLFTGTRGVGKTTlsRIFAKAlncetgvtsqpcgvcracREIDEGRFV 88
Cdd:PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTT--SILALA------------------HELLGPNYK 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 89 DYV-EMDAASNRGVD------EMAAllERAVYAPVdARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161
Cdd:PLN03025 65 EAVlELNASDDRGIDvvrnkiKMFA--QKKVTLPP-GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSK 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 924601414 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDAL 218
Cdd:PLN03025 142 IIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQAL 198
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
31-180 |
4.79e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 61.90 E-value: 4.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 31 ALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALnceTGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAA---- 106
Cdd:PRK08769 19 ALDAGRLGHGLLICGPEGLGKRAVALALAEHV---LASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTeivi 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 924601414 107 -----LLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180
Cdd:PRK08769 96 eqvreISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPA 174
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
89-228 |
5.16e-10 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 63.32 E-value: 5.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 89 DYVEMDAASNRGVDEM-AALLERAVYAPV-DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166
Cdd:PRK04132 598 NFLELNASDERGINVIrEKVKEFARTKPIgGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 677
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 924601414 167 LSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYS 228
Cdd:PRK04132 678 QSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALD 739
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
9-203 |
7.10e-10 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 61.16 E-value: 7.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLsrifAKALncetgvtsqpcgvcraCREIDegrfV 88
Cdd:PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTV----AKAL----------------CNEVG----A 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 89 DYVEMDAASNRgVDEMAALLER-AVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTL-EEPPPHVKFILATTDPQKIPVTV 166
Cdd:PHA02544 70 EVLFVNGSDCR-IDFVRNRLTRfASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFIITANNKNGIIEPL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 924601414 167 LSRC--LQFN----------LKQMpaghiVSHLERILGEEQITFEPQAL 203
Cdd:PHA02544 149 RSRCrvIDFGvptkeeqiemMKQM-----IVRCKGILEAEGVEVDMKVL 192
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
116-187 |
4.12e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 55.50 E-value: 4.12e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 924601414 116 VDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHL 187
Cdd:PRK07132 87 VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
6-220 |
5.32e-08 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 56.60 E-value: 5.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 6 LARKWRPKDFASLVGQEHVV---RALTHALDGGRLHHAyLFTGTRGVGKTTLSRIFAKALNCEtgvtsqpcgvcracrei 82
Cdd:PRK13341 18 LADRLRPRTLEEFVGQDHILgegRLLRRAIKADRVGSL-ILYGPPGVGKTTLARIIANHTRAH----------------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 83 degrfvdYVEMDAASNrGVDEMAALLERAvyapvDARFKVY------MIDEVHMLTNHAFNAMLktleeppPHVK----- 151
Cdd:PRK13341 80 -------FSSLNAVLA-GVKDLRAEVDRA-----KERLERHgkrtilFIDEVHRFNKAQQDALL-------PWVEngtit 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 924601414 152 FILATTDPQKIPV--TVLSRCLQFNLKQMPAGHIVSHLERIL-------GEEQITFEPQALRLLARAAQGsmrDALSL 220
Cdd:PRK13341 140 LIGATTENPYFEVnkALVSRSRLFRLKSLSDEDLHQLLKRALqdkergyGDRKVDLEPEAEKHLVDVANG---DARSL 214
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
41-170 |
1.20e-07 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 51.05 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 41 YLFTGTRGVGKTTLSRIFAKALNcetgvtsqpcgvcracreidegrfVDYVEMDAAS--NRGVDEMAALLERAVYAPVDA 118
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG------------------------APFIEISGSElvSKYVGESEKRLRELFEAAKKL 56
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 924601414 119 RFKVYMIDEVHMLTNH-----------AFNAMLKTLEEP---PPHVKFILATTDPQKIPVTVLSRC 170
Cdd:pfam00004 57 APCVIFIDEIDALAGSrgsggdsesrrVVNQLLTELDGFtssNSKVIVIAATNRPDKLDPALLGRF 122
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
58-173 |
2.35e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 52.91 E-value: 2.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 58 FAKALNCETgvTSQPCGVCRACREIDEGRFVD-YVEMDAASNRGVDEMAALLERAVYAPVDAR-FKVYMIDEVHMLTNHA 135
Cdd:PRK05818 27 YLTSIVCTK--ANGFCKTCESCLKILNGKYNDfYLIFDQKNPIKKEDALSIINKLNRPSVESNgKKIYIIYGIEKLNKQS 104
|
90 100 110
....*....|....*....|....*....|....*...
gi 924601414 136 FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQF 173
Cdd:PRK05818 105 ANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQY 142
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
38-162 |
2.61e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.83 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGvtsqpcGVCRAC-----REIDEGRFVDYVEMDAASNRGVDEMAALLERAV 112
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGG------GVIYIDgedilEEVLDQLLLIIVGGKKASGSGELRLRLALALAR 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 924601414 113 YAPVDarfkVYMIDEVHMLTNHAFNAML--------KTLEEPPPHVKFILATTDPQKI 162
Cdd:smart00382 76 KLKPD----VLILDEITSLLDAEQEALLllleelrlLLLLKSEKNLTVILTTNDEKDL 129
|
|
| DNA_pol3_tau_5 |
pfam12170 |
DNA polymerase III tau subunit V interacting with alpha; This domain family is found in ... |
661-776 |
5.85e-07 |
|
DNA polymerase III tau subunit V interacting with alpha; This domain family is found in bacteria, and is approximately 140 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. The extreme C-terminal region of this domain 5 is the part which interacts with the alpha subunit of the DNA polymerase III holoenzyme.
Pssm-ID: 432380 [Multi-domain] Cd Length: 142 Bit Score: 49.56 E-value: 5.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 661 EWPALAARLPLKGVAYQLAFNSELTAVDASTLKLSVPVPQ---YADAAQvTKLKAALADALGKPVEVSVEVG--PARRTA 735
Cdd:pfam12170 23 PWAALIERLGLPKLVQQLALNSVLEQQQDDQILLHLRSSQrhlNSDSAQ-KALAEALSELLGKPVELTITEGddPEQKTP 101
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 924601414 736 AALDAAARAARQREAEQEIHGDPFVQQLVRDFGARIVEGSV 776
Cdd:pfam12170 102 LEWRQAIYEEKLEQARQSLQADPNVQLLQQRFDAELDEDSI 142
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
179-241 |
1.29e-06 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 46.31 E-value: 1.29e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 924601414 179 PAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIA-YSANEVTESAVSGML 241
Cdd:cd18133 2 DQEQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAAlGDDGKISLDRVYQAV 65
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
179-238 |
2.20e-05 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 42.90 E-value: 2.20e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 924601414 179 PAGHIVSHLERILGEEQITFEPQALRLLARAAQGSMRDAL-SLtdQAIAYSANEVTESAVS 238
Cdd:cd18140 2 SKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAInDL--QAAAAGGGVITEEDVY 60
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
135-177 |
3.68e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 45.41 E-value: 3.68e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 924601414 135 AFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQ 177
Cdd:PRK08485 70 AQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQ 112
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
11-72 |
5.76e-05 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 44.03 E-value: 5.76e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 924601414 11 RPKDFASLVGQEHVVRALTHALDGGR-----LHHAyLFTGTRGVGKTTLSRIFAKALNCETGVTSQP 72
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKqrgeaLDHV-LLYGPPGLGKTTLANIIANEMGVNIRITSGP 67
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
11-72 |
1.90e-04 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 44.30 E-value: 1.90e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 924601414 11 RPKDFASLVGQEHVVRALTHALDGGR-----LHHAyLFTGTRGVGKTTLSRIFAKALNCETGVTSQP 72
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLKIFIEAAKkrgeaLDHV-LLYGPPGLGKTTLAHIIANEMGVNIRITSGP 88
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
9-51 |
2.76e-04 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 44.44 E-value: 2.76e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 924601414 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHaYLFTGTRGVGK 51
Cdd:PRK04132 12 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGK 53
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
11-72 |
3.67e-04 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 43.58 E-value: 3.67e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 924601414 11 RPKDFASLVGQEHVVRALTHALDGGR-----LHHAyLFTGTRGVGKTTLSRIFAKALNCETGVTSQP 72
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKkrgeaLDHV-LLYGPPGLGKTTLANIIANEMGVNIRITSGP 85
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
92-188 |
1.12e-03 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 41.75 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 92 EMDAASNR---GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS 168
Cdd:PRK06581 59 ETSATSNAkniSIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRS 138
|
90 100
....*....|....*....|
gi 924601414 169 RCLQFNLKQmPAGHIVSHLE 188
Cdd:PRK06581 139 RCFKINVRS-SILHAYNELY 157
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
18-63 |
3.05e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 39.41 E-value: 3.05e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 924601414 18 LVGQEHVVRALTHALDGGRLH--HAYLFTGTRGVGKTTLSRIFAKALN 63
Cdd:pfam13191 2 LVGREEELEQLLDALDRVRSGrpPSVLLTGEAGTGKTTLLRELLRALE 49
|
|
| AAA_14 |
pfam13173 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
38-155 |
3.16e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 463799 [Multi-domain] Cd Length: 128 Bit Score: 38.34 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 38 HHAYLFTGTRGVGKTTLSRIFAKALncetgvtsqpcgvcracreIDEGRFVdYVEMDAASNRGVDEmaALLERAVYAPVD 117
Cdd:pfam13173 2 RKILVITGPRQVGKTTLLLQLIKEL-------------------LPPENIL-YINLDDPRLLKLAD--FELLELFLELLY 59
|
90 100 110
....*....|....*....|....*....|....*...
gi 924601414 118 ARFKVYMIDEVHMLTNhAFNAmLKTLEEPPPHVKFILA 155
Cdd:pfam13173 60 PGKTYLFLDEIQRVPD-WELA-LKRLYDDGPNGRVILT 95
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
6-169 |
3.80e-03 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 40.28 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 6 LARKWRPKDFASLVGQEHVVRALTHA----LDGGRLHHAY--------LFTGTRGVGKTTLSRIFAKALNcetgvtsqpc 73
Cdd:COG0464 147 ELLELREAILDDLGGLEEVKEELRELvalpLKRPELREEYglppprglLLYGPPGTGKTLLARALAGELG---------- 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 924601414 74 gvcRACREIDEGRFVD-YVEmDAASNrgvdeMAALLERA-VYAPVdarfkVYMIDEVHML-----------TNHAFNAML 140
Cdd:COG0464 217 ---LPLIEVDLSDLVSkYVG-ETEKN-----LREVFDKArGLAPC-----VLFIDEADALagkrgevgdgvGRRVVNTLL 282
|
170 180
....*....|....*....|....*....
gi 924601414 141 KTLEEPPPHVKFILATTDPQKIPVTVLSR 169
Cdd:COG0464 283 TEMEELRSDVVVIAATNRPDLLDPALLRR 311
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
14-56 |
4.48e-03 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 39.06 E-value: 4.48e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 924601414 14 DFASLVGQEHVVRALTHALDGGrlhHAYLFTGTRGVGKTTLSR 56
Cdd:pfam01078 1 DLADVKGQEQAKRALEIAAAGG---HNLLMIGPPGSGKTMLAK 40
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
461-510 |
4.71e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 40.41 E-value: 4.71e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 924601414 461 LPQ-PETKAAPAGDMPPPTRKEPEPPAVAAVQRNDEPAPQAEPAPRAASPE 510
Cdd:PRK10811 502 LPKlHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVA 552
|
|
| TsaE |
pfam02367 |
Threonylcarbamoyl adenosine biosynthesis protein TsaE; This family of proteins is involved in ... |
26-70 |
4.84e-03 |
|
Threonylcarbamoyl adenosine biosynthesis protein TsaE; This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).
Pssm-ID: 460540 Cd Length: 127 Bit Score: 37.80 E-value: 4.84e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 924601414 26 RALTHALDGGRLhhaYLFTGTRGVGKTTLSRIFAKALNCETGVTS 70
Cdd:pfam02367 12 KRLAALLKPGDV---ILLSGDLGAGKTTFTRGLARGLGVTGPVTS 53
|
|
| TsaE |
COG0802 |
tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE [Translation, ribosomal ... |
22-70 |
9.89e-03 |
|
tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440565 Cd Length: 146 Bit Score: 37.38 E-value: 9.89e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 924601414 22 EHVVRALTHALDGGRLhhaYLFTGTRGVGKTTLSRIFAKALNCETGVTS 70
Cdd:COG0802 8 EALGARLAALLKPGDV---ILLEGDLGAGKTTFVRGLARGLGVTGEVTS 53
|
|
| |
