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Conserved domains on  [gi|923001950|ref|WP_053403390|]
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nucleotidyltransferase [Priestia koreensis]

Protein Classification

nucleotidyltransferase family protein( domain architecture ID 11442496)

nucleotidyltransferase family protein such as tRNA(Met) cytidine acetate ligase (TmcAL) that catalyzes the formation of ac4C34, the N4-acetylcytidine (ac4C) at the anticodon first position (position 34) of elongator tRNAMet, using acetate and ATP as substrates; nucleotidyltransferase family protein such as tRNA(Met) cytidine acetate ligase that catalyzes the formation of ac4C34, the N4-acetylcytidine (ac4C) at the anticodon first position (position 34) of elongator tRNAMet, using acetate and ATP as co-substrates

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TmcAL COG1323
tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis] ...
 1-401 0e+00

tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis]; tRNA-Met C34-N4-acetylcytidine synthase TmcAL is part of the Pathway/BioSystem: tRNA modification


:

Pssm-ID: 440934  Cd Length: 401  Bit Score: 586.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950   1 MKATGIIVEYNPFHNGHDFHVHESKKQTEADCMIGVMSGHFLQRGEPALLSKWYRTEMALRSGVDLIVELPYVYATQQAD 80
Cdd:COG1323    1 MKAVGIIAEYNPFHNGHLYHIEEAKKLTGADVVIAVMSGNFVQRGEPAILDKWARAKMALKNGVDLVIELPVVFAVQSAE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950  81 TFAAGAVAILNQLQ-VASICFGSEDGRIEPFQRAVQLTDSSQPS--EHVKSLLKEGYSYPKAMSLALQT---TEDSIDLS 154
Cdd:COG1323   81 YFAYGAVSLLDALGvVDHLCFGSESGDIELLKEIAKILIEEPEEfkELLKKYLKKGLSYPKARSLALEEllgDELAEDLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 155 QPNNILGYAYVKAIIDQHTGITPHTIKRTQAHYHDIELpTTPIASATSIRKSLHTQsSIEEISPYVPASTTRLLEDYVTT 234
Cdd:COG1323  161 SPNNILGLEYLKALKKLNSPIKPLTIKRIGAGYHDEEL-TGKIASATAIRKALLEG-DLEKLKNYVPPATYEILKEEIKE 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 235 YGRFHDWEQYFTLLKYKLLTMTPRQLADIYEMEEGIEYRLLDASKRASTFAEFMSLVKTKRYTWTRIQRMCVHILTHTMK 314
Cdd:COG1323  239 GRGPVSWEDFFPLLLYKLLTSSPEELANIYDVSEGLENRIKKAARKAGSFEELIELIKTKRYTWTRIQRILLHILLGITK 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 315 EEMKPFLHvDAPPYVRVLGMTKKGQEYLRLIKKKIEVPLVTKISKKQADtILRLDLKATSVYGMSLPEPLRSqfSMQDFT 394
Cdd:COG1323  319 DDLESFLK-KGPPYIRVLGFNKKGRELLKEIKKKASLPIITKVSKYKKS-LLELDIRATDLYSLLYPNPKPR--KGQDFT 394


                 ....*..
gi 923001950 395 TPPIILS 401
Cdd:COG1323  395 RPPIIIK 401
 
Name Accession Description Interval E-value
TmcAL COG1323
tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis] ...
 1-401 0e+00

tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis]; tRNA-Met C34-N4-acetylcytidine synthase TmcAL is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440934  Cd Length: 401  Bit Score: 586.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950   1 MKATGIIVEYNPFHNGHDFHVHESKKQTEADCMIGVMSGHFLQRGEPALLSKWYRTEMALRSGVDLIVELPYVYATQQAD 80
Cdd:COG1323    1 MKAVGIIAEYNPFHNGHLYHIEEAKKLTGADVVIAVMSGNFVQRGEPAILDKWARAKMALKNGVDLVIELPVVFAVQSAE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950  81 TFAAGAVAILNQLQ-VASICFGSEDGRIEPFQRAVQLTDSSQPS--EHVKSLLKEGYSYPKAMSLALQT---TEDSIDLS 154
Cdd:COG1323   81 YFAYGAVSLLDALGvVDHLCFGSESGDIELLKEIAKILIEEPEEfkELLKKYLKKGLSYPKARSLALEEllgDELAEDLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 155 QPNNILGYAYVKAIIDQHTGITPHTIKRTQAHYHDIELpTTPIASATSIRKSLHTQsSIEEISPYVPASTTRLLEDYVTT 234
Cdd:COG1323  161 SPNNILGLEYLKALKKLNSPIKPLTIKRIGAGYHDEEL-TGKIASATAIRKALLEG-DLEKLKNYVPPATYEILKEEIKE 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 235 YGRFHDWEQYFTLLKYKLLTMTPRQLADIYEMEEGIEYRLLDASKRASTFAEFMSLVKTKRYTWTRIQRMCVHILTHTMK 314
Cdd:COG1323  239 GRGPVSWEDFFPLLLYKLLTSSPEELANIYDVSEGLENRIKKAARKAGSFEELIELIKTKRYTWTRIQRILLHILLGITK 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 315 EEMKPFLHvDAPPYVRVLGMTKKGQEYLRLIKKKIEVPLVTKISKKQADtILRLDLKATSVYGMSLPEPLRSqfSMQDFT 394
Cdd:COG1323  319 DDLESFLK-KGPPYIRVLGFNKKGRELLKEIKKKASLPIITKVSKYKKS-LLELDIRATDLYSLLYPNPKPR--KGQDFT 394


                 ....*..
gi 923001950 395 TPPIILS 401
Cdd:COG1323  395 RPPIIIK 401
PRK13670 PRK13670
nucleotidyltransferase;
1-399 0e+00

nucleotidyltransferase;


Pssm-ID: 237464  Cd Length: 388  Bit Score: 572.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950   1 MKATGIIVEYNPFHNGHDFHVHESKKQTEADCMIGVMSGHFLQRGEPALLSKWYRTEMALRSGVDLIVELPYVYATQQAD 80
Cdd:PRK13670   1 MKVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMALENGVDLVVELPFLYSVQSAD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950  81 TFAAGAVAILNQLQVASICFGSEDGRIEPFQRAVQLTDSS--QPSEHVKSLLKEGYSYPKAMSLALQ--TTEDSIDLSQP 156
Cdd:PRK13670  81 FFAEGAVSILDALGVDSLVFGSESGDIEDFQKIAKILNEEpeEFKKLLKELLKKGLSYPQARSEALEefLGEINFDLSTP 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 157 NNILGYAYVKAIIDQHTGITPHTIKRTQAHYHDIELpTTPIASATSIRKSLHtQSSIEEISPYVPASTTRLLEDYvttYG 236
Cdd:PRK13670 161 NNILGLEYAKAIAKLGSNIKLHTIKREGAGYHDEEL-DGEFASATAIRKALL-EKDLDELKKFVPKATLELLKRY---IG 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 237 RFHDWEQYFTLLKYKLLTMTPRQLADIYEMEEGIEYRLLDASKRASTFAEFMSLVKTKRYTWTRIQRMCVHILTHTMKEE 316
Cdd:PRK13670 236 PFVSWEDYFPFLKYQLITLSHEDLRQIYQVSEGLENRIKKAIKKASSFDEFVELVKTKRYTYTRIQRLLTYILLNATKED 315

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 317 MKPFlhvDAPPYVRVLGMTKKGQEYLRLIKKKIEVPLVTKISKKqadTILRLDLKATSVYGMSLPEplrsQFSMQDFTTP 396
Cdd:PRK13670 316 VEKT---SLPPYIRVLGFTEKGQQYLKKIKKKSSLPIITKISKK---PWLELDIKATNIYQLINPS----QIQEQDFGRP 385


                 ...
gi 923001950 397 PII 399
Cdd:PRK13670 386 PIR 388
HIGH_NTase1 pfam05636
HIGH Nucleotidyl Transferase; This family consists of HIGH Nucleotidyl Transferases
 9-388 0e+00

HIGH Nucleotidyl Transferase; This family consists of HIGH Nucleotidyl Transferases


Pssm-ID: 428556  Cd Length: 386  Bit Score: 523.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950    9 EYNPFHNGHDFHVHESKKQTEADCMIGVMSGHFLQRGEPALLSKWYRTEMALRSGVDLIVELPYVYATQQADTFAAGAVA 88
Cdd:pfam05636   1 EYNPFHNGHLYHLEQAKELTGADVIIAVMSGNFVQRGEPAIIDKWTRAEMALENGADLVIELPVVYAVQSAEYFAKGAVS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950   89 ILNQLQVA-SICFGSEDGRIEPFQRAVQLTDSSQP--SEHVKSLLKEGYSYPKAMSLALQ--TTEDSIDLSQPNNILGYA 163
Cdd:pfam05636  81 LLNALGVVdSLSFGSESGDIELLQKIADILAEEPEeyKELLKEYLKKGLSYPKAREKALAsyLGLILELLSSPNNILGIE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950  164 YVKAIIDQHTGITPHTIKRTQAHYHDIELpTTPIASATSIRKSLHTQsSIEEISPYVPASTTRLLEDYVTTYgrfHDWEQ 243
Cdd:pfam05636 161 YLKALKKLNSPIKPVTIKREGAGYHDEEL-SGSIASATAIRKALKGG-GDEELSRYVPESTLEILENEIKKG---VFWED 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950  244 YFTLLKYKLLTMTPRQLADIYEMEEGIEYRLLDASKRASTFAEFMSLVKTKRYTWTRIQRMCVHILTHTMKEEMKPFLHV 323
Cdd:pfam05636 236 FFPLLKYKLLTMSPEELAQIYDVSEGLENRIKKAARKANSFEELIELIKTKRYTYTRIQRILLHILLGITKEDMKSLKSN 315

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 923001950  324 DaPPYVRVLGMTKKGQEYLRLIKKKIEVPLVTKISK----KQADTILRLDLKATSVYGMSLPEPLRSQF 388
Cdd:pfam05636 316 G-KPYIRVLGFNKKGRELLKEIKKKSSLPIITKVAKakklSEARELLELDIRATDLYSLLYKNKSQRDG 383
 
Name Accession Description Interval E-value
TmcAL COG1323
tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis] ...
 1-401 0e+00

tRNA-Met C34-N4-acetylcytidine synthase TmcAL [Translation, ribosomal structure and biogenesis]; tRNA-Met C34-N4-acetylcytidine synthase TmcAL is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440934  Cd Length: 401  Bit Score: 586.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950   1 MKATGIIVEYNPFHNGHDFHVHESKKQTEADCMIGVMSGHFLQRGEPALLSKWYRTEMALRSGVDLIVELPYVYATQQAD 80
Cdd:COG1323    1 MKAVGIIAEYNPFHNGHLYHIEEAKKLTGADVVIAVMSGNFVQRGEPAILDKWARAKMALKNGVDLVIELPVVFAVQSAE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950  81 TFAAGAVAILNQLQ-VASICFGSEDGRIEPFQRAVQLTDSSQPS--EHVKSLLKEGYSYPKAMSLALQT---TEDSIDLS 154
Cdd:COG1323   81 YFAYGAVSLLDALGvVDHLCFGSESGDIELLKEIAKILIEEPEEfkELLKKYLKKGLSYPKARSLALEEllgDELAEDLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 155 QPNNILGYAYVKAIIDQHTGITPHTIKRTQAHYHDIELpTTPIASATSIRKSLHTQsSIEEISPYVPASTTRLLEDYVTT 234
Cdd:COG1323  161 SPNNILGLEYLKALKKLNSPIKPLTIKRIGAGYHDEEL-TGKIASATAIRKALLEG-DLEKLKNYVPPATYEILKEEIKE 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 235 YGRFHDWEQYFTLLKYKLLTMTPRQLADIYEMEEGIEYRLLDASKRASTFAEFMSLVKTKRYTWTRIQRMCVHILTHTMK 314
Cdd:COG1323  239 GRGPVSWEDFFPLLLYKLLTSSPEELANIYDVSEGLENRIKKAARKAGSFEELIELIKTKRYTWTRIQRILLHILLGITK 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 315 EEMKPFLHvDAPPYVRVLGMTKKGQEYLRLIKKKIEVPLVTKISKKQADtILRLDLKATSVYGMSLPEPLRSqfSMQDFT 394
Cdd:COG1323  319 DDLESFLK-KGPPYIRVLGFNKKGRELLKEIKKKASLPIITKVSKYKKS-LLELDIRATDLYSLLYPNPKPR--KGQDFT 394


                 ....*..
gi 923001950 395 TPPIILS 401
Cdd:COG1323  395 RPPIIIK 401
PRK13670 PRK13670
nucleotidyltransferase;
1-399 0e+00

nucleotidyltransferase;


Pssm-ID: 237464  Cd Length: 388  Bit Score: 572.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950   1 MKATGIIVEYNPFHNGHDFHVHESKKQTEADCMIGVMSGHFLQRGEPALLSKWYRTEMALRSGVDLIVELPYVYATQQAD 80
Cdd:PRK13670   1 MKVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMALENGVDLVVELPFLYSVQSAD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950  81 TFAAGAVAILNQLQVASICFGSEDGRIEPFQRAVQLTDSS--QPSEHVKSLLKEGYSYPKAMSLALQ--TTEDSIDLSQP 156
Cdd:PRK13670  81 FFAEGAVSILDALGVDSLVFGSESGDIEDFQKIAKILNEEpeEFKKLLKELLKKGLSYPQARSEALEefLGEINFDLSTP 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 157 NNILGYAYVKAIIDQHTGITPHTIKRTQAHYHDIELpTTPIASATSIRKSLHtQSSIEEISPYVPASTTRLLEDYvttYG 236
Cdd:PRK13670 161 NNILGLEYAKAIAKLGSNIKLHTIKREGAGYHDEEL-DGEFASATAIRKALL-EKDLDELKKFVPKATLELLKRY---IG 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 237 RFHDWEQYFTLLKYKLLTMTPRQLADIYEMEEGIEYRLLDASKRASTFAEFMSLVKTKRYTWTRIQRMCVHILTHTMKEE 316
Cdd:PRK13670 236 PFVSWEDYFPFLKYQLITLSHEDLRQIYQVSEGLENRIKKAIKKASSFDEFVELVKTKRYTYTRIQRLLTYILLNATKED 315

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 317 MKPFlhvDAPPYVRVLGMTKKGQEYLRLIKKKIEVPLVTKISKKqadTILRLDLKATSVYGMSLPEplrsQFSMQDFTTP 396
Cdd:PRK13670 316 VEKT---SLPPYIRVLGFTEKGQQYLKKIKKKSSLPIITKISKK---PWLELDIKATNIYQLINPS----QIQEQDFGRP 385


                 ...
gi 923001950 397 PII 399
Cdd:PRK13670 386 PIR 388
HIGH_NTase1 pfam05636
HIGH Nucleotidyl Transferase; This family consists of HIGH Nucleotidyl Transferases
 9-388 0e+00

HIGH Nucleotidyl Transferase; This family consists of HIGH Nucleotidyl Transferases


Pssm-ID: 428556  Cd Length: 386  Bit Score: 523.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950    9 EYNPFHNGHDFHVHESKKQTEADCMIGVMSGHFLQRGEPALLSKWYRTEMALRSGVDLIVELPYVYATQQADTFAAGAVA 88
Cdd:pfam05636   1 EYNPFHNGHLYHLEQAKELTGADVIIAVMSGNFVQRGEPAIIDKWTRAEMALENGADLVIELPVVYAVQSAEYFAKGAVS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950   89 ILNQLQVA-SICFGSEDGRIEPFQRAVQLTDSSQP--SEHVKSLLKEGYSYPKAMSLALQ--TTEDSIDLSQPNNILGYA 163
Cdd:pfam05636  81 LLNALGVVdSLSFGSESGDIELLQKIADILAEEPEeyKELLKEYLKKGLSYPKAREKALAsyLGLILELLSSPNNILGIE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950  164 YVKAIIDQHTGITPHTIKRTQAHYHDIELpTTPIASATSIRKSLHTQsSIEEISPYVPASTTRLLEDYVTTYgrfHDWEQ 243
Cdd:pfam05636 161 YLKALKKLNSPIKPVTIKREGAGYHDEEL-SGSIASATAIRKALKGG-GDEELSRYVPESTLEILENEIKKG---VFWED 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950  244 YFTLLKYKLLTMTPRQLADIYEMEEGIEYRLLDASKRASTFAEFMSLVKTKRYTWTRIQRMCVHILTHTMKEEMKPFLHV 323
Cdd:pfam05636 236 FFPLLKYKLLTMSPEELAQIYDVSEGLENRIKKAARKANSFEELIELIKTKRYTYTRIQRILLHILLGITKEDMKSLKSN 315

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 923001950  324 DaPPYVRVLGMTKKGQEYLRLIKKKIEVPLVTKISK----KQADTILRLDLKATSVYGMSLPEPLRSQF 388
Cdd:pfam05636 316 G-KPYIRVLGFNKKGRELLKEIKKKSSLPIITKVAKakklSEARELLELDIRATDLYSLLYKNKSQRDG 383
PRK13671 PRK13671
nucleotidyltransferase;
3-309 8.97e-67

nucleotidyltransferase;


Pssm-ID: 184228  Cd Length: 298  Bit Score: 214.18  E-value: 8.97e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950   3 ATGIIVEYNPFHNGHDFHVHESKKQTEADCMIGVMSGHFLQRGEPALLSKWYRTEMALRSGVDLIVELPYVYATQQADTF 82
Cdd:PRK13671   2 AIGIIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVIKLPFEYATQAAHIF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950  83 AAGAVAILNQLQVASICFGSEDGRIEPFQRAVQL--TDSSQPSEHVKSLLKEGYSYPKAMSLALQTTEDSiDLSQPNNIL 160
Cdd:PRK13671  82 AKGAIKKLNKEKIDKLIFGSESNDIELMYKIANTikENEEEYNQLLKKNLKQGYSFPKASSLALKELTGS-EIVMPNDIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 923001950 161 GYAYVKAIIDQHTGITPHTIKRTQAHYHDIelPTTPIASATSIRKSLHTQSSIEEISPYVPASTTRLLEDYvttYGRFhd 240
Cdd:PRK13671 161 GFEYIKQIVNNNYPIQPYCIKRTVGFHSEN--PEDNYASATYLRKMIFENKDISKYSPMKFKKPPKSIENL---YKEF-- 233

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 923001950 241 weqyftllKYKLLTMTPRQLADIYEMEEGIEyRLLDASKRASTFAEFMSLVKTKRYTWTRIQRMCVHIL 309
Cdd:PRK13671 234 --------QKIVRNTSKEKLAKIWLVSEGIE-NLFKKNINAPNYDSFVNKCNSKRYTSSRIKRIMLYVL 293
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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