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Conserved domains on  [gi|922662056|emb|CUA18740|]
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Precorrin-2 C(20)-methyltransferase [Bacteroides fragilis]

Protein Classification

precorrin-2 C(20)-methyltransferase( domain architecture ID 10184533)

precorrin-2 C(20)-methyltransferase catalyzes methylation at the C-20 position of the cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A in the pathway toward cobalamin biosynthesis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Precorrin_2_C20_MT cd11645
Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase ...
10-233 1.13e-73

Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.


:

Pssm-ID: 381172 [Multi-domain]  Cd Length: 223  Bit Score: 223.15  E-value: 1.13e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCPATmtqDGKSSSRALSILNTLGFSD-TVQCFRLPMDKDRTLALRSYEAVYESS 88
Cdd:cd11645    1 VGVGPGDPELLTLKAVRILKEADVIFVPVS---KGGEGSAALIIAAALLIPDkEIIPLEFPMTKDREELEEAWDEAAEEI 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  89 KILRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAKELDDY 168
Cdd:cd11645   78 AEELKEGKDVAFLTLGDPSLYSTFSYLLERLRAPGVEVEIIPGITSFSAAAARLGIPLAEGDESLAILPATYDEEELEKA 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 922662056 169 LKHQTVVVIMKLSQCIDEVHQCIINHP-EYQYHYFENVGTEKEYYSCSTEELREKRYPYFSVMIIR 233
Cdd:cd11645  158 LENFDTVVLMKVGRNLEEIKELLEELGlLDKAVYVERCGMEGERIYTDLEELKEEKLPYFSLIIVK 223
 
Name Accession Description Interval E-value
Precorrin_2_C20_MT cd11645
Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase ...
10-233 1.13e-73

Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.


Pssm-ID: 381172 [Multi-domain]  Cd Length: 223  Bit Score: 223.15  E-value: 1.13e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCPATmtqDGKSSSRALSILNTLGFSD-TVQCFRLPMDKDRTLALRSYEAVYESS 88
Cdd:cd11645    1 VGVGPGDPELLTLKAVRILKEADVIFVPVS---KGGEGSAALIIAAALLIPDkEIIPLEFPMTKDREELEEAWDEAAEEI 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  89 KILRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAKELDDY 168
Cdd:cd11645   78 AEELKEGKDVAFLTLGDPSLYSTFSYLLERLRAPGVEVEIIPGITSFSAAAARLGIPLAEGDESLAILPATYDEEELEKA 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 922662056 169 LKHQTVVVIMKLSQCIDEVHQCIINHP-EYQYHYFENVGTEKEYYSCSTEELREKRYPYFSVMIIR 233
Cdd:cd11645  158 LENFDTVVLMKVGRNLEEIKELLEELGlLDKAVYVERCGMEGERIYTDLEELKEEKLPYFSLIIVK 223
CobF COG2243
Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of ...
10-233 6.47e-63

Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441844 [Multi-domain]  Cd Length: 229  Bit Score: 195.70  E-value: 6.47e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCPATmtqDGKSSSRALSILNTLGFSDTVQCFRLPMDKDRTLALRSYEAVYEssK 89
Cdd:COG2243    8 VGVGPGDPELLTLKAVRALREADVIAYPAK---GAGKASLAREIVAPYLPPARIVELVFPMTTDYEALVAAWDEAAA--R 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  90 ILR--AEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAKELDD 167
Cdd:COG2243   83 IAEelEAGRDVAFLTEGDPSLYSTFMYLLERLRERGFEVEVIPGITSFSAAAAALGIPLAEGDEPLTVLPGTLLEEELER 162
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922662056 168 YLKHQTVVVIMKLSQCIDEVHQCIINHP-EYQYHYFENVGTEKEYYSCSTEELREKRYPYFSVMIIR 233
Cdd:COG2243  163 ALDDFDTVVIMKVGRNFPKVREALEEAGlLDRAWYVERAGMPDERIVPGLAEVDIEEAPYFSLILVR 229
cobI_cbiL TIGR01467
precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, ...
10-234 8.41e-45

precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273642 [Multi-domain]  Cd Length: 230  Bit Score: 149.77  E-value: 8.41e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   10 VSLGPGEPDLITLKGLKALQGADCIFCPATmtqDGKSSSRALSILNTLGFSDTVQCFRL--PMDKDRTLALRSYEAVYES 87
Cdd:TIGR01467   6 VGVGPGDPELITVKALEALRSADVIAVPAS---KKGRESLARKIVEDYLKPNDTRILELvfPMTKDRDELEKAWDEAAEA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   88 SKILRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAKELDD 167
Cdd:TIGR01467  83 VAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAILPATAGEAELEK 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922662056  168 YLKHQTVVVIMKLSQCIDEVHQCIINHPE-YQYHYFENVGTEKEYYSCSTEELREKRYPYFSVMIIRF 234
Cdd:TIGR01467 163 ALAEFDTVVLMKVGRNLPQIKEALAKLGRlDAAVVVERATMPDEKIVDLVREAIDDALPYFSTILVRR 230
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
9-219 3.28e-31

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 113.98  E-value: 3.28e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056    9 FVSLGPGEPDLITLKGLKALQGADCIFCPAtmtqdgkssSRALSILNTLGFSDtvqcFRLPMDKDRTLALRSYEAVYESS 88
Cdd:pfam00590   4 LVGVGPGDPDLLTLRALRALKEADVVLGDD---------SRALEILLDLLPED----LYFPMTEDKEPLEEAYEEIAEAL 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   89 KILRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAK----E 164
Cdd:pfam00590  71 AAALRAGKDVARLVSGDPLVYGTGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFLPGLARielrL 150
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 922662056  165 LDDYLKHQTVVVIMKLSQCIDEVHQCIINHP--EYQYHYFENVGTEKE-YYSCSTEEL 219
Cdd:pfam00590 151 LEALLANGDTVVLLYGPRRLAELAELLLELYpdTTPVAVVERAGTPDEkVVRGTLGEL 208
PRK05576 PRK05576
cobalt-factor II C(20)-methyltransferase;
10-233 2.74e-29

cobalt-factor II C(20)-methyltransferase;


Pssm-ID: 235512 [Multi-domain]  Cd Length: 229  Bit Score: 109.62  E-value: 2.74e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCPATMTQDGkssSRALSI-LNTLGFSDTVQCFRLPMDKDRTLALRSYEAVYESS 88
Cdd:PRK05576   7 IGLGPGDPELLTVKAARILEEADVVYAPASRKGGG---SLALNIvRPYLKEETEIVELHFPMSKDEEEKEAVWKENAEEI 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  89 KILRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAKELDDY 168
Cdd:PRK05576  84 AAEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAIIPATREALIEQAL 163
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922662056 169 LKHQTvVVIMKLSQCIDEVHQCIINHpEYQYHYFENVGTEKEYYSCSTEELREKRyPYFSVMIIR 233
Cdd:PRK05576 164 TDFDS-VVLMKVYKNFALIEELLEEG-YLDALYVRRAYMEGEQILRRLEEILDDL-DYFSTIIAN 225
 
Name Accession Description Interval E-value
Precorrin_2_C20_MT cd11645
Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase ...
10-233 1.13e-73

Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.


Pssm-ID: 381172 [Multi-domain]  Cd Length: 223  Bit Score: 223.15  E-value: 1.13e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCPATmtqDGKSSSRALSILNTLGFSD-TVQCFRLPMDKDRTLALRSYEAVYESS 88
Cdd:cd11645    1 VGVGPGDPELLTLKAVRILKEADVIFVPVS---KGGEGSAALIIAAALLIPDkEIIPLEFPMTKDREELEEAWDEAAEEI 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  89 KILRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAKELDDY 168
Cdd:cd11645   78 AEELKEGKDVAFLTLGDPSLYSTFSYLLERLRAPGVEVEIIPGITSFSAAAARLGIPLAEGDESLAILPATYDEEELEKA 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 922662056 169 LKHQTVVVIMKLSQCIDEVHQCIINHP-EYQYHYFENVGTEKEYYSCSTEELREKRYPYFSVMIIR 233
Cdd:cd11645  158 LENFDTVVLMKVGRNLEEIKELLEELGlLDKAVYVERCGMEGERIYTDLEELKEEKLPYFSLIIVK 223
CobF COG2243
Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of ...
10-233 6.47e-63

Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441844 [Multi-domain]  Cd Length: 229  Bit Score: 195.70  E-value: 6.47e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCPATmtqDGKSSSRALSILNTLGFSDTVQCFRLPMDKDRTLALRSYEAVYEssK 89
Cdd:COG2243    8 VGVGPGDPELLTLKAVRALREADVIAYPAK---GAGKASLAREIVAPYLPPARIVELVFPMTTDYEALVAAWDEAAA--R 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  90 ILR--AEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAKELDD 167
Cdd:COG2243   83 IAEelEAGRDVAFLTEGDPSLYSTFMYLLERLRERGFEVEVIPGITSFSAAAAALGIPLAEGDEPLTVLPGTLLEEELER 162
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922662056 168 YLKHQTVVVIMKLSQCIDEVHQCIINHP-EYQYHYFENVGTEKEYYSCSTEELREKRYPYFSVMIIR 233
Cdd:COG2243  163 ALDDFDTVVIMKVGRNFPKVREALEEAGlLDRAWYVERAGMPDERIVPGLAEVDIEEAPYFSLILVR 229
cobI_cbiL TIGR01467
precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, ...
10-234 8.41e-45

precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273642 [Multi-domain]  Cd Length: 230  Bit Score: 149.77  E-value: 8.41e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   10 VSLGPGEPDLITLKGLKALQGADCIFCPATmtqDGKSSSRALSILNTLGFSDTVQCFRL--PMDKDRTLALRSYEAVYES 87
Cdd:TIGR01467   6 VGVGPGDPELITVKALEALRSADVIAVPAS---KKGRESLARKIVEDYLKPNDTRILELvfPMTKDRDELEKAWDEAAEA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   88 SKILRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAKELDD 167
Cdd:TIGR01467  83 VAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAILPATAGEAELEK 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922662056  168 YLKHQTVVVIMKLSQCIDEVHQCIINHPE-YQYHYFENVGTEKEYYSCSTEELREKRYPYFSVMIIRF 234
Cdd:TIGR01467 163 ALAEFDTVVLMKVGRNLPQIKEALAKLGRlDAAVVVERATMPDEKIVDLVREAIDDALPYFSTILVRR 230
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
9-219 3.28e-31

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 113.98  E-value: 3.28e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056    9 FVSLGPGEPDLITLKGLKALQGADCIFCPAtmtqdgkssSRALSILNTLGFSDtvqcFRLPMDKDRTLALRSYEAVYESS 88
Cdd:pfam00590   4 LVGVGPGDPDLLTLRALRALKEADVVLGDD---------SRALEILLDLLPED----LYFPMTEDKEPLEEAYEEIAEAL 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   89 KILRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAK----E 164
Cdd:pfam00590  71 AAALRAGKDVARLVSGDPLVYGTGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFLPGLARielrL 150
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 922662056  165 LDDYLKHQTVVVIMKLSQCIDEVHQCIINHP--EYQYHYFENVGTEKE-YYSCSTEEL 219
Cdd:pfam00590 151 LEALLANGDTVVLLYGPRRLAELAELLLELYpdTTPVAVVERAGTPDEkVVRGTLGEL 208
PRK05576 PRK05576
cobalt-factor II C(20)-methyltransferase;
10-233 2.74e-29

cobalt-factor II C(20)-methyltransferase;


Pssm-ID: 235512 [Multi-domain]  Cd Length: 229  Bit Score: 109.62  E-value: 2.74e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCPATMTQDGkssSRALSI-LNTLGFSDTVQCFRLPMDKDRTLALRSYEAVYESS 88
Cdd:PRK05576   7 IGLGPGDPELLTVKAARILEEADVVYAPASRKGGG---SLALNIvRPYLKEETEIVELHFPMSKDEEEKEAVWKENAEEI 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  89 KILRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAKELDDY 168
Cdd:PRK05576  84 AAEAEEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAIIPATREALIEQAL 163
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 922662056 169 LKHQTvVVIMKLSQCIDEVHQCIINHpEYQYHYFENVGTEKEYYSCSTEELREKRyPYFSVMIIR 233
Cdd:PRK05576 164 TDFDS-VVLMKVYKNFALIEELLEEG-YLDALYVRRAYMEGEQILRRLEEILDDL-DYFSTIIAN 225
PRK05948 PRK05948
precorrin-2 C(20)-methyltransferase;
10-233 2.03e-27

precorrin-2 C(20)-methyltransferase;


Pssm-ID: 180320  Cd Length: 238  Bit Score: 104.73  E-value: 2.03e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCPATMTqdGKSSSRALSILNTLGFSDTVQCFRLPMDKDRTLALRSYEAVYESSK 89
Cdd:PRK05948   9 ISVGPGDPELITLKGLRLLQSAPVVAFPAGLA--GQPGLAEQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQAAADQVW 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  90 ILRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQD--DIPVEQIAGIPAFIASGAMAGLHIVSQEERLIVIPGHVTAKELDD 167
Cdd:PRK05948  87 HYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELypQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLAILPALYHLEELEQ 166
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922662056 168 YLKHQTVVVIMKLSQCIDEVHQCIINHPEY-QYHYFENVGTEKEYYSCSTEELREKRYPYFSVMIIR 233
Cdd:PRK05948 167 ALTWADVVVLMKVSSVYPQVWQWLKARNLLeQASLVERATTPEQVIYRNLEDYPDLRLPYFSLLIIQ 233
PRK05990 PRK05990
precorrin-2 C(20)-methyltransferase; Reviewed
10-187 3.91e-21

precorrin-2 C(20)-methyltransferase; Reviewed


Pssm-ID: 180341  Cd Length: 241  Bit Score: 88.12  E-value: 3.91e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIfcpATMTQDGKSSSrALSILNTLgFSDTVQcfRLPM--------DKDRTlalrSY 81
Cdd:PRK05990   8 LGVGPGDPELLTLKALRLLQAAPVV---AYFVAKGKKGN-AFGIVEAH-LSPGQT--LLPLvypvtteiLPPPL----CY 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  82 EAV----YESSKILRAE----GQNVVIVAEGDAGLYSSIHYIYDKLQQdDIPVEQIAGIPAFIASGAMAGLHIVSQEERL 153
Cdd:PRK05990  77 ETViadfYDTSAEAVAAhldaGRDVAVICEGDPFFYGSYMYLHDRLAP-RYETEVIPGVCSMLGCWSVLGAPLVYRNQSL 155
                        170       180       190
                 ....*....|....*....|....*....|....
gi 922662056 154 IVIPGHVTAKELDDYLKHQTVVVIMKLSQCIDEV 187
Cdd:PRK05990 156 SVLSGVLPEEELRRRLADADAAVIMKLGRNLDKV 189
cobM_cbiF TIGR01465
precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, ...
9-194 7.12e-16

precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 200107  Cd Length: 247  Bit Score: 74.28  E-value: 7.12e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056    9 FVSLGPGEPDLITLKGLKALQGADCI-----FCPATMTQDgksSSRALSILNTLGfsdtvqcfrlpmdkdrtLALRSYEA 83
Cdd:TIGR01465   3 FIGAGPGDPDLITVKGRKLIESADVIlyagsLVPPELLAH---CRPGAEVVNSAG-----------------MSLEEIVD 62
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   84 VYESSKilrAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHI----VSQEERLIVIPGH 159
Cdd:TIGR01465  63 IMSDAH---REGKDVARLHSGDPSIYGAIAEQMRLLEALGIPYEVVPGVSSFFAAAAALGAELtvpeVSQTVILTRASGR 139
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 922662056  160 --VTAKE-LDDYLKHQTVVVIMKLSQCIDEVHQCIINH 194
Cdd:TIGR01465 140 tpMPEGEkLADLAKHGATMAIFLSAHILDKVVKELIEH 177
CobM COG2875
Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of ...
9-140 2.44e-14

Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 442122 [Multi-domain]  Cd Length: 256  Bit Score: 70.09  E-value: 2.44e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   9 FVSLGPGEPDLITLKGLKALQGADCIFC-----PATMTQDGKSSSRalsILNTlgfsdtvqcfrLPMDKDRTLALrsyea 83
Cdd:COG2875    7 FVGAGPGDPDLITVKGRRLLEEADVVLYagslvPPELLAYCKPGAE---IVDS-----------ASMTLEEIIAL----- 67
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 922662056  84 vyesskILRA--EGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGA 140
Cdd:COG2875   68 ------MKEAaaEGKDVVRLHSGDPSLYGAIAEQMRRLDALGIPYEVVPGVSAFAAAAA 120
TP_methylase cd11724
uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily ...
9-186 1.24e-13

uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily use S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and Ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381178 [Multi-domain]  Cd Length: 243  Bit Score: 67.97  E-value: 1.24e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   9 FVSLGPGEPDLITLKGLKALQGADCIFCPATMTQ------DGKsssRALSILNTLGFSDTVQCFRLPMDKDRTLALRSYE 82
Cdd:cd11724    4 LVGVGPGDPDLITLRALKAIKKADVVFAPPDLRKrfaeylAGK---EVLDDPHGLFTYYGKKCSPLEEAEKECEELEKQR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  83 AvyESSKILR---AEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVeqIAGIPAFIASGAMAGLHIVSQEE--RLIVIP 157
Cdd:cd11724   81 A--EIVQKIRealAQGKNVALLDSGDPTIYGPWIWYLEEFADLNPEV--IPGVSSFNAANAALKRSLTGGGDsrSVILTA 156
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 922662056 158 GHVTAKE---LDDYLKHQTVVVI----MKLSQCIDE 186
Cdd:cd11724  157 PFALKENedlLEDLAATGDTLVIfmmrLDLDELVEK 192
Precorrin-4_C11-MT cd11641
Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates ...
13-177 2.19e-13

Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. In the aerobic pathway, CobM catalyzes the methylation of precorrin-4 at C-11 to yield precorrin-5. In the anaerobic pathway, CibF catalyzes the methylation of cobalt-precorrin-4 to cobalt-precorrin-5. Both CibF and CobM, which are homologous, are included in this model. There are about 30 enzymes involved in vitamin B12 synthetic pathway. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared in both pathways and several of these enzymes are pathway-specific.


Pssm-ID: 381168 [Multi-domain]  Cd Length: 225  Bit Score: 67.03  E-value: 2.19e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  13 GPGEPDLITLKGLKALQGADCIFC-----PATMTQDGKSSSRalsILNTLGfsdtvqcfrlpMDKDRTLALrsYEAVYEs 87
Cdd:cd11641    4 GPGDPELITVKGARLLEEADVVIYagslvPPELLAYAKPGAE---IVDSAG-----------MTLEEIIEV--MREAAR- 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  88 skilraEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAG----LHIVSQEerLIV--IPGH-- 159
Cdd:cd11641   67 ------EGKDVVRLHTGDPSLYGAIREQIDALDKLGIPYEVVPGVSSFFAAAAALGteltLPEVSQT--VILtrLEGRtp 138
                        170
                 ....*....|....*....
gi 922662056 160 VTAKE-LDDYLKHQTVVVI 177
Cdd:cd11641  139 VPEGEsLRELAKHGATLAI 157
TP_methylase cd09815
S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet ...
10-178 1.67e-11

S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381167 [Multi-domain]  Cd Length: 219  Bit Score: 61.64  E-value: 1.67e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCPatmtqDGKSSSRALSILNTLGFSDTVqcfrlpmdkdrtLALRSYEAVYESSK 89
Cdd:cd09815    1 VGVGPGDPDLLTLRALEILRAADVVVAE-----DKDSKLLSLVLRAILKDGKRI------------YDLHDPNVEEEMAE 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  90 ILRAE---GQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHIVsqeERLIVIPGH------V 160
Cdd:cd09815   64 LLLEEarqGKDVAFLSPGDPGVAGTGAELVERAEREGVEVKVIPGVSAADAAAAALGIDLG---ESFLFVTASdllenpR 140
                        170
                 ....*....|....*...
gi 922662056 161 TAKELDDYLKHQTVVVIM 178
Cdd:cd09815  141 LLVLKALAKERRHLVLFL 158
Precorrin-6Y-MT cd11644
Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also ...
10-233 1.26e-10

Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also known as cobalt-precorrin-7 C(5)-methyltransferase, also known as cobalt-precorrin-6Y C(5)-methyltransferase) catalyzes the methylation of C-5 in cobalt-precorrin-7 to form cobalt-precorrin-8. It participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. CbiE functions in the anaerobic pathway, it is a subunit of precorrin-6Y C5,15-methyltransferase, a bifunctional enzyme: cobalt-precorrin-7 C(5)-methyltransferase (CbiE)/cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) (CbiT), that catalyzes two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. CbiE and CbiT can be found fused (CbiET, also called CobL), or on separate protein chains (CbiE and CbiT). In the aerobic pathway, a single enzyme called CobL catalyzes the methylations at C-5 and C-15, and the decarboxylation of the C-12 acetate side chain of precorrin-6B.


Pssm-ID: 381171 [Multi-domain]  Cd Length: 198  Bit Score: 58.66  E-value: 1.26e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCpatmtqdgksSSRALSILNTLGfsdtvqcfrlpmDKDRTLALRSYEAVYESsk 89
Cdd:cd11644    1 IGIGPGGPEYLTPEAREAIEEADVVIG----------AKRLLELFPDLG------------AEKIPLPSEDIAELLEE-- 56
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  90 iLRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVE------QIA----GIP---AFIASgamagLH---------IV 147
Cdd:cd11644   57 -IAEAGKRVVVLASGDPGFYGIGKTLLRRLGGEEVEVIpgissvQLAaarlGLPwedARLVS-----LHgrdlenlrrAL 130
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056 148 SQEERLIVIPG-----HVTAKELDDYLKHQTVVVImklsqcidevhqciinhpeyqyhyFENVGTEKE-YYSCSTEELRE 221
Cdd:cd11644  131 RRGRKVFVLTDgkntpAEIARLLLERGLGDSRVTV------------------------GENLGYPDErITEGTAEELAE 186
                        250
                 ....*....|..
gi 922662056 222 KRYPYFSVMIIR 233
Cdd:cd11644  187 EEFSDLNVVLIE 198
SUMT cd11642
Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen ...
13-194 1.86e-08

Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.


Pssm-ID: 381169  Cd Length: 228  Bit Score: 53.21  E-value: 1.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  13 GPGEPDLITLKGLKALQGADCIFCpatmtqDgksssralsilntlgfsdtvqcfRLPMDKDRTLALRSYEAVY---ESSK 89
Cdd:cd11642    4 GPGDPDLLTLKALRALQQADVVLY------D-----------------------RLVSPEILALAPPGAELIYvgkRPGR 54
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  90 -----------ILRA--EGQNVVIVAEGDAGLYSS----IHYiydkLQQDDIPVEQIAGIPAFIASGAMAGLHI----VS 148
Cdd:cd11642   55 hsvpqeeinelLVELarEGKRVVRLKGGDPFVFGRggeeIEA----LREAGIPFEVVPGITSAIAAAAYAGIPLthrgVA 130
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 922662056 149 QeeRLIVIPGHVTAKELDDYL-----KHQTVVVIMKLSQcIDEVHQCIINH 194
Cdd:cd11642  131 S--SVTFVTGHEADGKLPDDDaalarPGGTLVIYMGVSN-LEEIAERLIAA 178
Precorrin_3B_C17_MT cd11646
Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17) ...
10-143 6.37e-08

Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.


Pssm-ID: 381173 [Multi-domain]  Cd Length: 238  Bit Score: 51.65  E-value: 6.37e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCPATMTQ------DGKsssralsilntlgfsdtvQCFRLPMDKDRTLALRSYEA 83
Cdd:cd11646    4 VGIGPGSADLMTPRAREALEEADVIVGYKTYLDliedllPGK------------------EVISSGMGEEVERAREALEL 65
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922662056  84 VyesskilrAEGQNVVIVAEGDAGLY--SSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAG 143
Cdd:cd11646   66 A--------LEGKRVALVSSGDPGIYgmAGLVLELLDERWDDIEVEVVPGITAALAAAALLG 119
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
9-182 1.18e-07

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 50.84  E-value: 1.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   9 FVSLGPGEPDLITLKGLKALQGADCIFCpatmtqDGKSSSRALSILNTlgfsdtvQCFRLPMDKdrtlalRSYEAVYESS 88
Cdd:COG0007    6 LVGAGPGDPDLLTLKALRALQQADVVLY------DRLVSPEILALARP-------DAELIYVGK------RGGRHSLPQE 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  89 KILR------AEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGlhI------VSQeeRLIVI 156
Cdd:COG0007   67 EINAllvelaRAGKRVVRLKGGDPFVFGRGGEEAEALAAAGIPFEVVPGITAAIAAPAYAG--IplthrgVAS--SVTFV 142
                        170       180       190
                 ....*....|....*....|....*....|.
gi 922662056 157 PGHVTAKELDDYLKH-----QTVVVIMKLSQ 182
Cdd:COG0007  143 TGHEKDGKLDLDWAAlarpgGTLVIYMGVKN 173
cbiF PRK15473
cobalt-precorrin-4 methyltransferase;
4-187 1.47e-07

cobalt-precorrin-4 methyltransferase;


Pssm-ID: 185370  Cd Length: 257  Bit Score: 50.91  E-value: 1.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   4 THPIRFVSLGPGEPDLITLKGLKALQGADCIFcpatmtqdgksssRALSILNT--LGF-SDTVQCF-RLPMDKDRTLALR 79
Cdd:PRK15473   7 PRCVWFVGAGPGDKELITLKGYRLLQQAQVVI-------------YAGSLINTelLDYcPAQAECHdSAELHLEQIIDLM 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  80 SyEAVyesskilrAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHI----VSQEERLIV 155
Cdd:PRK15473  74 E-AGV--------KAGKTVVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYtvpeVSQSLIITR 144
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 922662056 156 IPGH--VTAKE-LDDYLKHQTVVVIMKLSQCIDEV 187
Cdd:PRK15473 145 MEGRtpVPAREqLESFASHQTSMAIFLSVQRIHRV 179
PRK05787 PRK05787
cobalt-precorrin-7 (C(5))-methyltransferase;
6-132 3.52e-06

cobalt-precorrin-7 (C(5))-methyltransferase;


Pssm-ID: 235609 [Multi-domain]  Cd Length: 210  Bit Score: 46.40  E-value: 3.52e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056   6 PIRFVSLGPGEPDLITLKGLKALQGADCIFcpatmtqdGksSSRALSILNTLGFSDtvqCFRLPMDKDRTLALRSyeavy 85
Cdd:PRK05787   1 MIYIVGIGPGDPEYLTLKALEAIRKADVVV--------G--SKRVLELFPELIDGE---AFVLTAGLRDLLEWLE----- 62
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 922662056  86 esskiLRAEGQNVVIVAEGDAGLySSIHYIYDKLQQDDIPVEQIAGI 132
Cdd:PRK05787  63 -----LAAKGKNVVVLSTGDPLF-SGLGKLLKVRRAVAEDVEVIPGI 103
PRK06136 PRK06136
uroporphyrinogen-III C-methyltransferase;
9-35 8.83e-06

uroporphyrinogen-III C-methyltransferase;


Pssm-ID: 235711  Cd Length: 249  Bit Score: 45.59  E-value: 8.83e-06
                         10        20
                 ....*....|....*....|....*..
gi 922662056   9 FVSLGPGEPDLITLKGLKALQGADCIF 35
Cdd:PRK06136   7 LVGAGPGDPDLITLKGVRLLEQADVVL 33
cbiH PRK15478
precorrin-3B C(17)-methyltransferase;
10-143 3.61e-05

precorrin-3B C(17)-methyltransferase;


Pssm-ID: 185375 [Multi-domain]  Cd Length: 241  Bit Score: 43.72  E-value: 3.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFCPATMTQDGKSssralsilntlgFSDTVQCFRLPMDKDRTLALRSYEavyessk 89
Cdd:PRK15478   5 IGIGPGSQAMMTMEAIEALQAAEIVVGYKTYTHLVKA------------FTGDKQVIKTGMCKEIERCQAAIE------- 65
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 922662056  90 iLRAEGQNVVIVAEGDAGLYSSIHYIYDKL--QQDDIPVEQIAGIPAFIASGAMAG 143
Cdd:PRK15478  66 -LAQAGHNVALISSGDAGIYGMAGLVLELVskQKLDVEVRLIPGMTASIAAASLLG 120
PLN02625 PLN02625
uroporphyrin-III C-methyltransferase
10-181 1.30e-04

uroporphyrin-III C-methyltransferase


Pssm-ID: 178232 [Multi-domain]  Cd Length: 263  Bit Score: 41.93  E-value: 1.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  10 VSLGPGEPDLITLKGLKALQGADCIFcpatmtQDGKSSSralSILNTLGFSDTVQCFRLPMDKDRtlalRSYEAVYESSK 89
Cdd:PLN02625  20 VGTGPGDPDLLTLKALRLLQTADVVL------YDRLVSP---DILDLVPPGAELLYVGKRGGYHS----RTQEEIHELLL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  90 ILRAEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIPVEQIAGIPAFIASGAMAGLHI----VSQEERliVIPGHVTAKEL 165
Cdd:PLN02625  87 SFAEAGKTVVRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLthrgVATSVR--FLTGHDREGGT 164
                        170       180
                 ....*....|....*....|...
gi 922662056 166 DD-------YLKHQTVVVIMKLS 181
Cdd:PLN02625 165 DPldvaeaaADPDTTLVVYMGLG 187
YabN_N_like cd11723
N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and ...
7-36 5.55e-04

N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and similar domains; This family includes the S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent tetrapyrrole methylase (TP-methylase) domain of Bacillus subtilis YabN, and similar domains. YabN is a fusion of an N-terminal TP-methylase and a C-terminal MazG-type nucleotide pyrophosphohydrolase domain. MazG-like NTP-PPases have been implicated in house-cleaning functions such as degrading abnormal (d)NTPs. TP-methylases use S-AdoMet in the methylation of diverse substrates. Most TP-methylase family members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis, other members like diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) act on other substrates. The specific function of YabN's TP-methylase domain is not known.


Pssm-ID: 381177  Cd Length: 218  Bit Score: 39.78  E-value: 5.55e-04
                         10        20        30
                 ....*....|....*....|....*....|
gi 922662056   7 IRFVSLGPGEPDLITLKGLKALQGADCIFC 36
Cdd:cd11723    1 ITIVGLGPGDPDLLTLGALEALKSADKVYL 30
Precorrin-6A-synthase cd11643
Precorrin-6A synthase (also named CobF); Precorrin-6A synthase participates in the pathway ...
13-132 3.68e-03

Precorrin-6A synthase (also named CobF); Precorrin-6A synthase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model represents CobF, the precorrin-6A synthase, an enzyme specific to the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, CobF catalyzes the removal of the extruded acyl group in the subsequent step, and the addition of a methyl group at C-1. The product of this reaction is precorrin-6A, which gets reduced by an NADH-dependent reductase to yield precorrin-6B. This family includes enzymes in GC-rich Gram-positive bacteria, alpha proteobacteria and Pseudomonas-related species.


Pssm-ID: 381170  Cd Length: 244  Bit Score: 37.48  E-value: 3.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922662056  13 GPGEPDLITLKGLKALQGADCIFCPAtmTQDGKSSSRAL--SILNTLGFSDTVQCFRLPM-DKDRTLAlrSYE------- 82
Cdd:cd11643    5 GPGDPDHLTLQAIEALNRVDVFFVLD--KGEEKSDLAALrrEICERHLGDRPYRVVEFPDpERDRSPA--DYRaavadwh 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 922662056  83 ----AVYESskILR---AEGQNVVIVAEGDAGLYSSIHYIYDKLQQDDIP--VEQIAGI 132
Cdd:cd11643   81 daraALWED--AIAeelPEGGTGAFLVWGDPSLYDSTLRILDRLRAGRVAleVEVIPGI 137
DHP5_DphB cd11647
diphthine methyl ester synthase and diphthine synthase; Eukaryotic diphthine methyl ester ...
9-35 6.09e-03

diphthine methyl ester synthase and diphthine synthase; Eukaryotic diphthine methyl ester synthase (DHP5) and archaeal diphthamide synthase (DphB) participate in the second step of the biosynthetic pathway of diphthamide. The eukaryotic enzyme catalyzes four methylations of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine methyl ester; the archaeal enzyme, catalyzes only 3 methylations, producing diphthine. Diphtheria toxin ADP-ribosylates diphthamide leading to inhibition of protein synthesis in the eukaryotic host cells.


Pssm-ID: 381174  Cd Length: 241  Bit Score: 37.01  E-value: 6.09e-03
                         10        20
                 ....*....|....*....|....*..
gi 922662056   9 FVSLGPGEPDLITLKGLKALQGADCIF 35
Cdd:cd11647    4 LIGLGLGDEKDITLEGLEALKKADKVY 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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