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Conserved domains on  [gi|918073585|ref|WP_052328768|]
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DNA translocase FtsK [Porphyromonas catoniae]

Protein Classification

DNA translocase FtsK( domain architecture ID 11680576)

DNA translocase FtsK is a motor that converts the chemical energy of binding and hydrolyzing ATP into movement of the double-stranded DNA substrate

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FtsK COG1674
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ...
351-837 0e+00

DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 441280 [Multi-domain]  Cd Length: 611  Bit Score: 745.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 351 PSTELLRDYEQGSSEIDMQEIELNKQRIIDTLASFKMRVTPMKATVGPTVTLYEVVPDSGIKVSRIKTMEDDIAMSLKSE 430
Cdd:COG1674  138 PPLDLLDPPPPKKEKIDEEELEENARLLEETLEDFGVEAKVVGVTPGPVVTRYEIEPAPGVKVSKITNLADDIALALAAK 217
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 431 GVRIIAPMPGQGTIGIEVPNSLPQTVSMRSILASRKFkeQQEKMELPIGIGKTITNEPFIFDLTKMPHLLIAGATGQGKS 510
Cdd:COG1674  218 SVRIEAPIPGKSAVGIEVPNKKRETVYLREVLESDEF--QNSKSPLPIALGKDISGEPVVADLAKMPHLLIAGATGSGKS 295
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 511 VGLNALITSLLYSKRPEELKFVMVDPKMLEFSIYEEIekhflaklPDSDKAIITDMSRVVATLNSLCIEMDNRYHLLQHA 590
Cdd:COG1674  296 VCINAMILSLLYKATPDEVRLILIDPKMVELSVYNGI--------PHLLTPVVTDPKKAANALKWAVREMERRYKLFAKA 367
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 591 GraVRNIKEYNEQVRSGELRRID--GHEILPYIVLIVDEFADLMMTVGKEVEQPIARLAQKARAAGIHMVIATQRPSTDV 668
Cdd:COG1674  368 G--VRNIAGYNEKVREAKAKGEEeeGLEPLPYIVVIIDELADLMMVAGKEVEEAIARLAQKARAAGIHLILATQRPSVDV 445
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 669 ITGLIKANFPARIAFKVFSMVDSRTVLDSPGANQLIGRGDMLFYQ--GKEMVRVQCAFMDTPETEAIVSHIAHQEStgsa 746
Cdd:COG1674  446 ITGLIKANIPSRIAFAVSSKIDSRTILDQGGAEKLLGRGDMLFLPpgASKPIRVQGAFVSDEEVERVVDFLKSQGE---- 521
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 747 lilPEY---VPEGEDGGAKTFNPNEKDSLFDEVARMVVQTQVGSTSNIQRKFNIGYNRAGRLMDQLEGAGIVGPQEGSKP 823
Cdd:COG1674  522 ---PEYieeILEEEEEEDEGGDDDEDDELFDEAVELVVETQKASTSLLQRRLRIGYNRAARLIDQMEERGIVGPAEGSKP 598
                        490
                 ....*....|....
gi 918073585 824 REVFIKDQiSLEEL 837
Cdd:COG1674  599 REVLVSPE-ELEEL 611
FtsK_4TM super family cl16286
4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the ...
60-221 2.46e-11

4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the FtsK DNA tranlocases. During sporulation in Bacillus subtilis, the SpoIIIE protein is believed to form a translocation pore at the leading edge of the nearly closed septum. The E. coli FtsK protein is homologous to SpoIIIE, and can free chromosomes trapped in vegetative septa.


The actual alignment was detected with superfamily member pfam13491:

Pssm-ID: 463896  Cd Length: 171  Bit Score: 62.99  E-value: 2.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585   60 LCLLAFMTVALFSVLTFLLSKGSDQSLiaplaegevleESSRSTA----NLFGIPGARLADYLFNrLLGWGIFFLFAYAL 135
Cdd:pfam13491   7 LLGLALLLLGLFLLLALVSYSPADPSW-----------STSGSGAapvhNWGGRFGAWLADLLLQ-LFGYSAWLLPVALL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  136 YFIYHLIWRPGERilRYISRFllLGFLSLwtAIAMSALQHAFPSDTFLVW----GGTQGVRLYRYIQDSVGSAGLVVILG 211
Cdd:pfam13491  75 YWGWRLFRRRSLE--RRWLRL--LGFLLL--LLASSALFALRLPSLEFGLpggaGGVIGRLLANALVTLLGFTGATLLLL 148
                         170
                  ....*....|
gi 918073585  212 FSLLIFAVLC 221
Cdd:pfam13491 149 ALLAIGLSLV 158
 
Name Accession Description Interval E-value
FtsK COG1674
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ...
351-837 0e+00

DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441280 [Multi-domain]  Cd Length: 611  Bit Score: 745.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 351 PSTELLRDYEQGSSEIDMQEIELNKQRIIDTLASFKMRVTPMKATVGPTVTLYEVVPDSGIKVSRIKTMEDDIAMSLKSE 430
Cdd:COG1674  138 PPLDLLDPPPPKKEKIDEEELEENARLLEETLEDFGVEAKVVGVTPGPVVTRYEIEPAPGVKVSKITNLADDIALALAAK 217
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 431 GVRIIAPMPGQGTIGIEVPNSLPQTVSMRSILASRKFkeQQEKMELPIGIGKTITNEPFIFDLTKMPHLLIAGATGQGKS 510
Cdd:COG1674  218 SVRIEAPIPGKSAVGIEVPNKKRETVYLREVLESDEF--QNSKSPLPIALGKDISGEPVVADLAKMPHLLIAGATGSGKS 295
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 511 VGLNALITSLLYSKRPEELKFVMVDPKMLEFSIYEEIekhflaklPDSDKAIITDMSRVVATLNSLCIEMDNRYHLLQHA 590
Cdd:COG1674  296 VCINAMILSLLYKATPDEVRLILIDPKMVELSVYNGI--------PHLLTPVVTDPKKAANALKWAVREMERRYKLFAKA 367
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 591 GraVRNIKEYNEQVRSGELRRID--GHEILPYIVLIVDEFADLMMTVGKEVEQPIARLAQKARAAGIHMVIATQRPSTDV 668
Cdd:COG1674  368 G--VRNIAGYNEKVREAKAKGEEeeGLEPLPYIVVIIDELADLMMVAGKEVEEAIARLAQKARAAGIHLILATQRPSVDV 445
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 669 ITGLIKANFPARIAFKVFSMVDSRTVLDSPGANQLIGRGDMLFYQ--GKEMVRVQCAFMDTPETEAIVSHIAHQEStgsa 746
Cdd:COG1674  446 ITGLIKANIPSRIAFAVSSKIDSRTILDQGGAEKLLGRGDMLFLPpgASKPIRVQGAFVSDEEVERVVDFLKSQGE---- 521
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 747 lilPEY---VPEGEDGGAKTFNPNEKDSLFDEVARMVVQTQVGSTSNIQRKFNIGYNRAGRLMDQLEGAGIVGPQEGSKP 823
Cdd:COG1674  522 ---PEYieeILEEEEEEDEGGDDDEDDELFDEAVELVVETQKASTSLLQRRLRIGYNRAARLIDQMEERGIVGPAEGSKP 598
                        490
                 ....*....|....
gi 918073585 824 REVFIKDQiSLEEL 837
Cdd:COG1674  599 REVLVSPE-ELEEL 611
PRK10263 PRK10263
DNA translocase FtsK; Provisional
297-827 1.07e-132

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 428.73  E-value: 1.07e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  297 QPT-PQTRYSYPEHG----DEGDELQMIVEQAPEDDLVE-------DNHFSPEPTNPGVLLALYQKPSTELlrdyeqgsS 364
Cdd:PRK10263  809 QPVaPQPQYQQPQQPvapqPQYQQPQQPVAPQPQDTLLHpllmrngDSRPLHKPTTPLPSLDLLTPPPSEV--------E 880
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  365 EIDMQEIElNKQRIIDT-LASFKMRVTPMKATVGPTVTLYEVVPDSGIKVSRIKTMEDDIAMSLKSEGVRIIAPMPGQGT 443
Cdd:PRK10263  881 PVDTFALE-QMARLVEArLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPY 959
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  444 IGIEVPNSLPQTVSMRSILASRKFKEQQEKmeLPIGIGKTITNEPFIFDLTKMPHLLIAGATGQGKSVGLNALITSLLYS 523
Cdd:PRK10263  960 VGLELPNKKRQTVYLREVLDNAKFRDNPSP--LTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYK 1037
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  524 KRPEELKFVMVDPKMLEFSIYEEIeKHFLAKlpdsdkaIITDMSRVVATLNSLCIEMDNRYHLLQHAGraVRNIKEYNEQ 603
Cdd:PRK10263 1038 AQPEDVRFIMIDPKMLELSVYEGI-PHLLTE-------VVTDMKDAANALRWCVNEMERRYKLMSALG--VRNLAGYNEK 1107
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  604 V-RSGELRR------------IDGH----EILPYIVLIVDEFADLMMTVGKEVEQPIARLAQKARAAGIHMVIATQRPST 666
Cdd:PRK10263 1108 IaEADRMMRpipdpywkpgdsMDAQhpvlKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSV 1187
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  667 DVITGLIKANFPARIAFKVFSMVDSRTVLDSPGANQLIGRGDMLfYQGKEM---VRVQCAFMDTPETEAIVShiaHQEST 743
Cdd:PRK10263 1188 DVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDML-YSGPNStlpVRVHGAFVRDQEVHAVVQ---DWKAR 1263
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  744 GSalilPEYV------PEGEDGGAKTFNPNEKDSLFDEVARMVVQTQVGSTSNIQRKFNIGYNRAGRLMDQLEGAGIVGP 817
Cdd:PRK10263 1264 GR----PQYVdgitsdSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSE 1339
                         570
                  ....*....|
gi 918073585  818 QEGSKPREVF 827
Cdd:PRK10263 1340 QGHNGNREVL 1349
FtsK_SpoIIIE pfam01580
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ...
458-665 1.09e-57

FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.


Pssm-ID: 279863 [Multi-domain]  Cd Length: 219  Bit Score: 196.44  E-value: 1.09e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  458 MRSILASRKFkeQQEKMELPIGIGKTITNEPFIFDLTKMP-HLLIAGATGQGKSVGLNALITSLLYSKRPEELKFVMVDP 536
Cdd:pfam01580   1 LLEVLESKPF--DTDYSRLPIALGKDISGNPEVFDLKKMPvHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDP 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  537 KMLEFSIYEEIeKHFLAklpdsdKAIITDMSRVVATLNSLCIEMDNRYHLLQHAGraVRNIKEYNEQVRSGELRR----- 611
Cdd:pfam01580  79 KMGELSAYEDI-PHLLS------VPVATDPKRALRALEWLVDEMERRYALFRALG--VRSIAGYNGEIAEDPLDGfgdvf 149
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  612 --IDGH----------EILPYIVLIVDEFADLMMTVGKE----VEQPIARLAQKARAAGIHMVIATQRPS 665
Cdd:pfam01580 150 lvIYGVhvmctagrwlEILPYLVVIVDERAELRLAAPKDsemrVEDAIVRLAQKGRAAGIHLLLATQRPS 219
Ftsk_gamma smart00843
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated ...
767-829 7.56e-28

This domain directs oriented DNA translocation and forms a winged helix structure; Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.


Pssm-ID: 197911 [Multi-domain]  Cd Length: 63  Bit Score: 106.73  E-value: 7.56e-28
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 918073585   767 NEKDSLFDEVARMVVQTQVGSTSNIQRKFNIGYNRAGRLMDQLEGAGIVGPQEGSKPREVFIK 829
Cdd:smart00843   1 EEEDELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPANGSKPREVLVT 63
T7SS_EccC_a TIGR03924
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ...
472-728 6.20e-25

type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274858 [Multi-domain]  Cd Length: 658  Bit Score: 110.83  E-value: 6.20e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  472 EKMELPIGIGKTitNEPFIFDLTK-----M-PHLLIAGATGQGKSVGLNALITSLLYSKRPEELKFVMVDPKMlefsiye 545
Cdd:TIGR03924 407 DRLRVPIGVGDD--GEPVELDLKEsaeggMgPHGLCIGATGSGKSELLRTLVLGLAATHSPEQLNLVLVDFKG------- 477
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  546 eiEKHFL--AKLPDSdKAIITDM-------SRVVATLNSlciEMDNRYHLLQHAGrAVRNIKEYNEQVRSGelrriDGHE 616
Cdd:TIGR03924 478 --GATFLglEGLPHV-SAVITNLadeaplvDRMQDALAG---EMNRRQELLRAAG-NFANVAEYEKARAAG-----ADLP 545
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  617 ILPYIVLIVDEF----------ADLMMTVGkeveqpiarlaQKARAAGIHMVIATQRPSTDVITGLiKANFPARIAFKVF 686
Cdd:TIGR03924 546 PLPALFVVVDEFsellsqhpdfADLFVAIG-----------RLGRSLGVHLLLASQRLDEGRLRGL-ESHLSYRIGLKTF 613
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 918073585  687 SMVDSRTVLDSPGANQL---IGRGdMLFYQGKEMVRVQCAFMDTP 728
Cdd:TIGR03924 614 SASESRAVLGVPDAYHLpstPGAG-YLKVDTAEPVRFRAAYVSGP 657
FtsK_4TM pfam13491
4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the ...
60-221 2.46e-11

4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the FtsK DNA tranlocases. During sporulation in Bacillus subtilis, the SpoIIIE protein is believed to form a translocation pore at the leading edge of the nearly closed septum. The E. coli FtsK protein is homologous to SpoIIIE, and can free chromosomes trapped in vegetative septa.


Pssm-ID: 463896  Cd Length: 171  Bit Score: 62.99  E-value: 2.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585   60 LCLLAFMTVALFSVLTFLLSKGSDQSLiaplaegevleESSRSTA----NLFGIPGARLADYLFNrLLGWGIFFLFAYAL 135
Cdd:pfam13491   7 LLGLALLLLGLFLLLALVSYSPADPSW-----------STSGSGAapvhNWGGRFGAWLADLLLQ-LFGYSAWLLPVALL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  136 YFIYHLIWRPGERilRYISRFllLGFLSLwtAIAMSALQHAFPSDTFLVW----GGTQGVRLYRYIQDSVGSAGLVVILG 211
Cdd:pfam13491  75 YWGWRLFRRRSLE--RRWLRL--LGFLLL--LLASSALFALRLPSLEFGLpggaGGVIGRLLANALVTLLGFTGATLLLL 148
                         170
                  ....*....|
gi 918073585  212 FSLLIFAVLC 221
Cdd:pfam13491 149 ALLAIGLSLV 158
 
Name Accession Description Interval E-value
FtsK COG1674
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ...
351-837 0e+00

DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441280 [Multi-domain]  Cd Length: 611  Bit Score: 745.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 351 PSTELLRDYEQGSSEIDMQEIELNKQRIIDTLASFKMRVTPMKATVGPTVTLYEVVPDSGIKVSRIKTMEDDIAMSLKSE 430
Cdd:COG1674  138 PPLDLLDPPPPKKEKIDEEELEENARLLEETLEDFGVEAKVVGVTPGPVVTRYEIEPAPGVKVSKITNLADDIALALAAK 217
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 431 GVRIIAPMPGQGTIGIEVPNSLPQTVSMRSILASRKFkeQQEKMELPIGIGKTITNEPFIFDLTKMPHLLIAGATGQGKS 510
Cdd:COG1674  218 SVRIEAPIPGKSAVGIEVPNKKRETVYLREVLESDEF--QNSKSPLPIALGKDISGEPVVADLAKMPHLLIAGATGSGKS 295
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 511 VGLNALITSLLYSKRPEELKFVMVDPKMLEFSIYEEIekhflaklPDSDKAIITDMSRVVATLNSLCIEMDNRYHLLQHA 590
Cdd:COG1674  296 VCINAMILSLLYKATPDEVRLILIDPKMVELSVYNGI--------PHLLTPVVTDPKKAANALKWAVREMERRYKLFAKA 367
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 591 GraVRNIKEYNEQVRSGELRRID--GHEILPYIVLIVDEFADLMMTVGKEVEQPIARLAQKARAAGIHMVIATQRPSTDV 668
Cdd:COG1674  368 G--VRNIAGYNEKVREAKAKGEEeeGLEPLPYIVVIIDELADLMMVAGKEVEEAIARLAQKARAAGIHLILATQRPSVDV 445
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 669 ITGLIKANFPARIAFKVFSMVDSRTVLDSPGANQLIGRGDMLFYQ--GKEMVRVQCAFMDTPETEAIVSHIAHQEStgsa 746
Cdd:COG1674  446 ITGLIKANIPSRIAFAVSSKIDSRTILDQGGAEKLLGRGDMLFLPpgASKPIRVQGAFVSDEEVERVVDFLKSQGE---- 521
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 747 lilPEY---VPEGEDGGAKTFNPNEKDSLFDEVARMVVQTQVGSTSNIQRKFNIGYNRAGRLMDQLEGAGIVGPQEGSKP 823
Cdd:COG1674  522 ---PEYieeILEEEEEEDEGGDDDEDDELFDEAVELVVETQKASTSLLQRRLRIGYNRAARLIDQMEERGIVGPAEGSKP 598
                        490
                 ....*....|....
gi 918073585 824 REVFIKDQiSLEEL 837
Cdd:COG1674  599 REVLVSPE-ELEEL 611
PRK10263 PRK10263
DNA translocase FtsK; Provisional
297-827 1.07e-132

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 428.73  E-value: 1.07e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  297 QPT-PQTRYSYPEHG----DEGDELQMIVEQAPEDDLVE-------DNHFSPEPTNPGVLLALYQKPSTELlrdyeqgsS 364
Cdd:PRK10263  809 QPVaPQPQYQQPQQPvapqPQYQQPQQPVAPQPQDTLLHpllmrngDSRPLHKPTTPLPSLDLLTPPPSEV--------E 880
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  365 EIDMQEIElNKQRIIDT-LASFKMRVTPMKATVGPTVTLYEVVPDSGIKVSRIKTMEDDIAMSLKSEGVRIIAPMPGQGT 443
Cdd:PRK10263  881 PVDTFALE-QMARLVEArLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPY 959
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  444 IGIEVPNSLPQTVSMRSILASRKFKEQQEKmeLPIGIGKTITNEPFIFDLTKMPHLLIAGATGQGKSVGLNALITSLLYS 523
Cdd:PRK10263  960 VGLELPNKKRQTVYLREVLDNAKFRDNPSP--LTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYK 1037
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  524 KRPEELKFVMVDPKMLEFSIYEEIeKHFLAKlpdsdkaIITDMSRVVATLNSLCIEMDNRYHLLQHAGraVRNIKEYNEQ 603
Cdd:PRK10263 1038 AQPEDVRFIMIDPKMLELSVYEGI-PHLLTE-------VVTDMKDAANALRWCVNEMERRYKLMSALG--VRNLAGYNEK 1107
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  604 V-RSGELRR------------IDGH----EILPYIVLIVDEFADLMMTVGKEVEQPIARLAQKARAAGIHMVIATQRPST 666
Cdd:PRK10263 1108 IaEADRMMRpipdpywkpgdsMDAQhpvlKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSV 1187
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  667 DVITGLIKANFPARIAFKVFSMVDSRTVLDSPGANQLIGRGDMLfYQGKEM---VRVQCAFMDTPETEAIVShiaHQEST 743
Cdd:PRK10263 1188 DVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDML-YSGPNStlpVRVHGAFVRDQEVHAVVQ---DWKAR 1263
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  744 GSalilPEYV------PEGEDGGAKTFNPNEKDSLFDEVARMVVQTQVGSTSNIQRKFNIGYNRAGRLMDQLEGAGIVGP 817
Cdd:PRK10263 1264 GR----PQYVdgitsdSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSE 1339
                         570
                  ....*....|
gi 918073585  818 QEGSKPREVF 827
Cdd:PRK10263 1340 QGHNGNREVL 1349
FtsK_SpoIIIE pfam01580
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ...
458-665 1.09e-57

FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.


Pssm-ID: 279863 [Multi-domain]  Cd Length: 219  Bit Score: 196.44  E-value: 1.09e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  458 MRSILASRKFkeQQEKMELPIGIGKTITNEPFIFDLTKMP-HLLIAGATGQGKSVGLNALITSLLYSKRPEELKFVMVDP 536
Cdd:pfam01580   1 LLEVLESKPF--DTDYSRLPIALGKDISGNPEVFDLKKMPvHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDP 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  537 KMLEFSIYEEIeKHFLAklpdsdKAIITDMSRVVATLNSLCIEMDNRYHLLQHAGraVRNIKEYNEQVRSGELRR----- 611
Cdd:pfam01580  79 KMGELSAYEDI-PHLLS------VPVATDPKRALRALEWLVDEMERRYALFRALG--VRSIAGYNGEIAEDPLDGfgdvf 149
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  612 --IDGH----------EILPYIVLIVDEFADLMMTVGKE----VEQPIARLAQKARAAGIHMVIATQRPS 665
Cdd:pfam01580 150 lvIYGVhvmctagrwlEILPYLVVIVDERAELRLAAPKDsemrVEDAIVRLAQKGRAAGIHLLLATQRPS 219
FtsK_alpha pfam17854
FtsK alpha domain; FtsK is a DNA translocase that coordinates chromosome segregation and cell ...
351-450 8.05e-39

FtsK alpha domain; FtsK is a DNA translocase that coordinates chromosome segregation and cell division in bacteria. In addition to its role as activator of XerCD site-specific recombination, FtsK can translocate double-stranded DNA (dsDNA) rapidly and directionally and reverse direction. FtsK can be split into three domains called alpha (this entry), beta and gamma. The alpha and beta domains contain the core ATPase machinery of the DNA translocase.


Pssm-ID: 436096 [Multi-domain]  Cd Length: 101  Bit Score: 139.21  E-value: 8.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  351 PSTELLRDYEQGSSEIDMQEIELNKQRIIDTLASFKMRVTPMKATVGPTVTLYEVVPDSGIKVSRIKTMEDDIAMSLKSE 430
Cdd:pfam17854   2 PPLDLLEPPPTSSQKVDEEELEETAEKLEETLAEFGIEAKVVGVTPGPVVTLYELEPAPGVKVSKITNLSDDLALALSAP 81
                          90       100
                  ....*....|....*....|
gi 918073585  431 GVRIIAPMPGQGTIGIEVPN 450
Cdd:pfam17854  82 SIRIVAPIPGKSTIGIEVPN 101
FtsK_gamma pfam09397
Ftsk gamma domain; This domain directs oriented DNA translocation and forms a winged helix ...
767-829 1.92e-30

Ftsk gamma domain; This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.


Pssm-ID: 462786 [Multi-domain]  Cd Length: 63  Bit Score: 114.00  E-value: 1.92e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 918073585  767 NEKDSLFDEVARMVVQTQVGSTSNIQRKFNIGYNRAGRLMDQLEGAGIVGPQEGSKPREVFIK 829
Cdd:pfam09397   1 EEEDELYEEAVEIVIETGKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPADGSKPREVLIT 63
Ftsk_gamma smart00843
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated ...
767-829 7.56e-28

This domain directs oriented DNA translocation and forms a winged helix structure; Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.


Pssm-ID: 197911 [Multi-domain]  Cd Length: 63  Bit Score: 106.73  E-value: 7.56e-28
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 918073585   767 NEKDSLFDEVARMVVQTQVGSTSNIQRKFNIGYNRAGRLMDQLEGAGIVGPQEGSKPREVFIK 829
Cdd:smart00843   1 EEEDELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPANGSKPREVLVT 63
T7SS_EccC_a TIGR03924
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ...
472-728 6.20e-25

type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274858 [Multi-domain]  Cd Length: 658  Bit Score: 110.83  E-value: 6.20e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  472 EKMELPIGIGKTitNEPFIFDLTK-----M-PHLLIAGATGQGKSVGLNALITSLLYSKRPEELKFVMVDPKMlefsiye 545
Cdd:TIGR03924 407 DRLRVPIGVGDD--GEPVELDLKEsaeggMgPHGLCIGATGSGKSELLRTLVLGLAATHSPEQLNLVLVDFKG------- 477
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  546 eiEKHFL--AKLPDSdKAIITDM-------SRVVATLNSlciEMDNRYHLLQHAGrAVRNIKEYNEQVRSGelrriDGHE 616
Cdd:TIGR03924 478 --GATFLglEGLPHV-SAVITNLadeaplvDRMQDALAG---EMNRRQELLRAAG-NFANVAEYEKARAAG-----ADLP 545
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  617 ILPYIVLIVDEF----------ADLMMTVGkeveqpiarlaQKARAAGIHMVIATQRPSTDVITGLiKANFPARIAFKVF 686
Cdd:TIGR03924 546 PLPALFVVVDEFsellsqhpdfADLFVAIG-----------RLGRSLGVHLLLASQRLDEGRLRGL-ESHLSYRIGLKTF 613
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 918073585  687 SMVDSRTVLDSPGANQL---IGRGdMLFYQGKEMVRVQCAFMDTP 728
Cdd:TIGR03924 614 SASESRAVLGVPDAYHLpstPGAG-YLKVDTAEPVRFRAAYVSGP 657
T7_EssCb_Firm TIGR03928
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ...
450-707 1.06e-20

type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274860 [Multi-domain]  Cd Length: 1296  Bit Score: 98.14  E-value: 1.06e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585   450 NSLPQTVSMRSILASRKFKEQQ-----------EKMELPIGI-GKtitNEPFIFDL-TKM--PHLLIAGATGQGKSVGLN 514
Cdd:TIGR03928  411 NSIPESVTFLEMYGVKKVEELNiqerwaknetyKSLAVPIGLrGK---DDIVYLNLhEKAhgPHGLVAGTTGSGKSEILQ 487
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585   515 ALITSLLYSKRPEELKFVMVDPK---MLEfsIYEEIeKHFLAKLPDSDKAIItdmSRVVATLNSlciEMDNRYHLLQHAG 591
Cdd:TIGR03928  488 TYILSLAVNFHPHEVAFLLIDYKgggMAN--LFKNL-PHLLGTITNLDGAQS---MRALASIKA---ELKKRQRLFGENN 558
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585   592 raVRNIKEYNEQVRSGELRridghEILPYIVLIVDEFADLmmtvgkEVEQP--IARLAQKA---RAAGIHMVIATQRPSt 666
Cdd:TIGR03928  559 --VNHINQYQKLYKQGKAK-----EPMPHLFLISDEFAEL------KSEQPefMKELVSTArigRSLGVHLILATQKPS- 624
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 918073585   667 DVITGLIKANFPARIAFKVFSMVDSRTVLDSPGANQLI--GRG 707
Cdd:TIGR03928  625 GVVDDQIWSNSRFKLALKVQDASDSNEILKTPDAAEITvpGRA 667
FtsK_4TM pfam13491
4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the ...
60-221 2.46e-11

4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the FtsK DNA tranlocases. During sporulation in Bacillus subtilis, the SpoIIIE protein is believed to form a translocation pore at the leading edge of the nearly closed septum. The E. coli FtsK protein is homologous to SpoIIIE, and can free chromosomes trapped in vegetative septa.


Pssm-ID: 463896  Cd Length: 171  Bit Score: 62.99  E-value: 2.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585   60 LCLLAFMTVALFSVLTFLLSKGSDQSLiaplaegevleESSRSTA----NLFGIPGARLADYLFNrLLGWGIFFLFAYAL 135
Cdd:pfam13491   7 LLGLALLLLGLFLLLALVSYSPADPSW-----------STSGSGAapvhNWGGRFGAWLADLLLQ-LFGYSAWLLPVALL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  136 YFIYHLIWRPGERilRYISRFllLGFLSLwtAIAMSALQHAFPSDTFLVW----GGTQGVRLYRYIQDSVGSAGLVVILG 211
Cdd:pfam13491  75 YWGWRLFRRRSLE--RRWLRL--LGFLLL--LLASSALFALRLPSLEFGLpggaGGVIGRLLANALVTLLGFTGATLLLL 148
                         170
                  ....*....|
gi 918073585  212 FSLLIFAVLC 221
Cdd:pfam13491 149 ALLAIGLSLV 158
T7_EssCb_Firm TIGR03928
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ...
487-707 2.55e-10

type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274860 [Multi-domain]  Cd Length: 1296  Bit Score: 64.62  E-value: 2.55e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585   487 EPFIFDLTKMPHLLIAGATGQGKSVGLNALITSLLYSKRPEELKFVMVDpkmlefsiyeeiekhF-------LAKLPDSD 559
Cdd:TIGR03928  801 EPLTLDLSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFD---------------FgtngllpLKKLPHVA 865
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585   560 KAIITD----MSRVVATLNSlciEMDNRYHLLQHAGraVRNIKEYNEqvRSGELrridgheiLPYIVLIVDEFADLMMTV 635
Cdd:TIGR03928  866 DYFTLDeeekIEKLIRRIKK---EIDRRKKLFSEYG--VASISMYNK--ASGEK--------LPQIVIIIDNYDAVKEEP 930
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 918073585   636 GKEVEQP-IARLAQKARAAGIHMVIATQRpSTDVITGLiKANFPARIAFKVFSMVDSRTVLDSPGANQ--LIGRG 707
Cdd:TIGR03928  931 FYEDFEElLIQLAREGASLGIYLVMTAGR-QNAVRMPL-MNNIKTKIALYLIDKSEYRSIVGRTKFTIeeIPGRG 1003
T7_EssCb_Firm TIGR03928
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ...
420-675 5.12e-10

type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274860 [Multi-domain]  Cd Length: 1296  Bit Score: 63.47  E-value: 5.12e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585   420 EDDIAMS--LKSEGVRIIAPMPGQGTIGIEVpnsLPQTVSMRSILASRKFKEQQEKMELPIGIgKTITNEPFIFDLTKMP 497
Cdd:TIGR03928 1022 EDDLEVIenIKAEIQKMNEAWTGERPKPIPM---VPEELSLEEFRERYEVRKILEEGSIPIGL-DEETVEPVYIDLTENP 1097
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585   498 HLLIAGATGQGKSVGLNALITSLLYSkrpEELKFVMVDpkmlefSIYEEIEKHflAKLPDSdKAIITDMSRVVATLNSLC 577
Cdd:TIGR03928 1098 HLLIVGESDDGKTNVLKSLLKTLAKQ---EKEKIGLID------SIDRGLLAY--RDLKEV-ATYIEEKEDLKEILAELK 1165
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585   578 IEMDNRYHLLQHAGRAVRNIKEYNEqvrsgelrridgheilpyIVLIVDEFADLMMTVGKEVEQPIARLAQKARAAGIHM 657
Cdd:TIGR03928 1166 EEIELREAAYKEALQNETGEPAFKP------------------ILLIIDDLEDFIQRTDLEIQDILALIMKNGKKLGIHF 1227
                          250       260
                   ....*....|....*....|..
gi 918073585   658 VIATQRP----STDVITGLIKA 675
Cdd:TIGR03928 1228 IVAGTHSelskSYDGVPKEIKQ 1249
T7SS_EccC_b TIGR03925
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ...
452-660 1.47e-07

type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274859 [Multi-domain]  Cd Length: 566  Bit Score: 55.00  E-value: 1.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  452 LPQTVSMRSILAsrkfKEQQEKMELPIGIGKTiTNEPFIFDLTKMPHLLIAGATGQGKSVGLNALITSLLYSKRPEELKF 531
Cdd:TIGR03925 324 LPARLPLSALPA----GGGAPRLRVPLGLGES-DLAPVYVDFAESPHLLIFGDSESGKTTLLRTIARGIVRRYSPDQARL 398
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  532 VMVDPKMlefSIYEEIEKHFLAklpdsdkAIITDMSRVVATLNSLCIEMDNRyhlLQHAGravrnikeyneqVRSGELRR 611
Cdd:TIGR03925 399 VVVDYRR---TLLGAVPEDYLA-------GYAATSAALTELIAALAALLERR---LPGPD------------VTPQQLRA 453
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 918073585  612 ID---GHEilpyIVLIVDEFaDLMMTVGKEVEQPIARLAQKARAAGIHMVIA 660
Cdd:TIGR03925 454 RSwwsGPE----IYVVVDDY-DLVATGSGNPLAPLVELLPHARDIGLHVVVA 500
T7SS_EccC_b TIGR03925
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ...
452-754 2.61e-06

type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274859 [Multi-domain]  Cd Length: 566  Bit Score: 51.15  E-value: 2.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  452 LPQTVSMRSILAS------RKFKEQQEKMELPIGIgktiTNEPF-------IFDLTKMP-HLLIAGATGQGKSVGLNALI 517
Cdd:TIGR03925  25 LPEPPALDDLLPRldvdpwRVDYGQRGRLTVPVGI----VDRPFeqrqdplVVDLSGAAgHVAIVGAPQSGKSTALRTLI 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  518 TSLLYSKRPEELKFVMVD---PKMLEfsiyeeiekhfLAKLP---------DSDKAiitdmSRVVATLNSLcieMDNRYH 585
Cdd:TIGR03925 101 LALALTHTPEEVQFYCLDfggGGLAS-----------LADLPhvggvagrlDPERV-----RRTVAEVEGL---LRRRER 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  586 LLqhAGRAVRNIKEYNEQVRSGELRRidgheiLPY--IVLIVD-------EFADLmmtvgkevEQPIARLAQKARAAGIH 656
Cdd:TIGR03925 162 LF--RTHGIDSMAQYRARRAAGRLPE------DPFgdVFLVIDgwgtlrqDFEDL--------EDKVTDLAARGLAYGVH 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585  657 MVIATQRpSTDVITGLiKANFPARIAFK----VFSMVDSRTVLDSPgaNQLIGRGdmLFYQGKEMV----RVQ-CAFMDT 727
Cdd:TIGR03925 226 VVLTASR-WSEIRPAL-RDLIGTRIELRlgdpMDSEIDRRAAARVP--AGRPGRG--LTPDGLHMLialpRLDgIASVDD 299
                         330       340       350
                  ....*....|....*....|....*....|
gi 918073585  728 PETEAIVSHIA---HQESTGSALILPEYVP 754
Cdd:TIGR03925 300 LGTRGLVAVIRdvwGGPPAPPVRLLPARLP 329
VirB4 COG3451
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
480-536 1.03e-04

Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442674 [Multi-domain]  Cd Length: 546  Bit Score: 45.71  E-value: 1.03e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 480 IGKTITNEPFIFDL---TKMPHLLIAGATGQGKSVGLNALITSLLYSKRpeelKFVMVDP 536
Cdd:COG3451  185 LLNTRSGTPVFFDFhdgLDNGNTLILGPSGSGKSFLLKLLLLQLLRYGA----RIVIFDP 240
HerA COG0433
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ...
477-665 2.47e-04

Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];


Pssm-ID: 440202 [Multi-domain]  Cd Length: 388  Bit Score: 44.21  E-value: 2.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 477 PIGIGKTI-TNEPFIFDLTKM--PHLLIAGATGQGKSVGLNALITSLL--------------YSK--------------R 525
Cdd:COG0433   25 GILIGKLLsPGVPVYLDLDKLlnRHILILGATGSGKSNTLQVLLEELSragvpvlvfdphgeYSGlaepgaeradvgvfD 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 526 PEELKFVMVDPKMLEFSIyEEIEKHFLAKLPDSD--------------------------KAIITDMSRVVATLNS---- 575
Cdd:COG0433  105 PGAGRPLPINPWDLFATA-SELGPLLLSRLDLNDtqrgvlrealrladdkglllldlkdlIALLEEGEELGEEYGNvsaa 183
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918073585 576 ------------------LCIEMDNRYHLLQHAGRAVR-NIKEYNEQVRS-------GEL-----RRIDGHEILPYIVLI 624
Cdd:COG0433  184 sagallrrleslesadglFGEPGLDLEDLLRTDGRVTViDLSGLPEELQStfvlwllRELfearpEVGDADDRKLPLVLV 263
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 918073585 625 VDEFADLMMTVGKEVEQPIARLAQKARAAGIHMVIATQRPS 665
Cdd:COG0433  264 IDEAHLLAPAAPSALLEILERIAREGRKFGVGLILATQRPS 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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