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Conserved domains on  [gi|918020926|ref|YP_009163334|]
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hypothetical chloroplast RF1 (plastid) [Trillium tschonoskii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf1 super family cl42951
Ycf1; Provisional
 5-2102 0e+00

Ycf1; Provisional


The actual alignment was detected with superfamily member CHL00204:

Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1747.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926    5 SLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKEVSATTGFLTGQLMMFISIYYAPLHLALRRPHL 81
Cdd:CHL00204    6 SLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   82 ITVLVLPYFLFYFFWNNNNWNNfEYGSTTQNSMRNLNIQWVFLTNLIFQLFNHFRLPSSTLTRLVNIPMFRCNNKILFVT 161
Cdd:CHL00204   86 ITVLALPYLLFHFFWNNHKHFF-DYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVT 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  162 SSFVGWLIGHILFMKWVELLLFWIRKKNSIRS----------KSKLRNSMARVFSILLFITCIYSLGRMPSPIFTKKLKD 231
Cdd:CHL00204  165 SSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSnvlirsnkylVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKE 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  232 REKEKEEKKKEEERVKKEIDLEITSETKDEFKFHFNEINETRYKNETRYKDSPVYEdsyLDGYQDNwelgkLKDKKKTYp 311
Cdd:CHL00204  245 TSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDE---TEEIRVN-----GKEKIKKD- 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  312 RFGFEKPFLTFIFDYKRWNRPLRYIKNKKFENAIRNEISQYFFDTCPSDGKQKMSFTYPPSLSTFSEMIERKISLYTTEK 391
Cdd:CHL00204  316 LFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEK 395

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  392 LCHEDQYNYWVYTNEQKKYNLINEFISRIKGLEKGFLVLDMFEKRTRFCNDENEQECLPKMYDPFLNGPYRGKTNKneNE 471
Cdd:CHL00204  396 LSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKK--LF 473

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  472 SDSCINNLispiePIEDSIEMFCINKIYDLLLNNDNSREFEHQKNPIEERSELEERSEFEERSELEERSELEERSELEER 551
Cdd:CHL00204  474 SPSIINET-----SIKNNIEGVWINKIHGILLNNTDYQEFEQKIDTFNKKSLSTEINESLTLINKFGAEPKSSLNLKGLS 548

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  552 SELEERSELEEGSELEE---------------------------IRKKVSQWSYKLVDvmDLQEQAAAEEKErkkgtaag 604
Cdd:CHL00204  549 LFSEPEQEKINSEEEIKifkflfdavitdpndqtiikksigikeISKKVPRWSYKLID--ELEQLEGENEEN-------- 618

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  605 ikteekekekekkelTEEDADIRSRKFKRIVVWNTeaqkaekakqekkekmqaeralnplitprtprtprtptttptttl 684
Cdd:CHL00204  619 ---------------VPSDHQIRSRKAKRVVIFTD--------------------------------------------- 638

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  685 nptlnptptttttptpttttsttTSTNNHQEDEEKNKEKKKDDEEIAVLHYSYLPDFRRNLIKGSMRAQRRKIGIFEPFQ 764
Cdd:CHL00204  639 -----------------------NESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQ 695

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  765 VSVHSPLFLDRIDKTFVFSpLDIFKMTNIIFRNWVGRESEFQISDFEEEKDKKDKKDKKDKKEERKEKEKKEErkekdkk 844
Cdd:CHL00204  696 ANVHSPLFLDRIDKLFFFS-FDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARI------- 767

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  845 eerkekdkkdkkeerkekdkkdkkeerkekdkkdkkkeikekeekekkdkkdkkeerkekekkeqrEISEAWDSFVLAQA 924
Cdd:CHL00204  768 ------------------------------------------------------------------EIAEAWDSILFAQV 781

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  925 SRGLALVTQSFIRKRIILPLLIIVKNVGRMLLFQFPELTQDFKALNKEKHIKCTYNGISLSEKEFPQDWLRDGMQIKILY 1004
Cdd:CHL00204  782 IRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKILF 861

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1005 PFCLKPWKGAKIKVWSSFRRKSKKKRKFSF--LTVWGMETKVLFGSSRKSLNFFQPIYDELDKKKRKLKnqfknlknkfl 1082
Cdd:CHL00204  862 PFYLKPWHRSKLRSSHKDRMKKKKKKKNDFcfLTVWGMETELPFGSPRKRPSFFEPIFKELKKKIRKFK----------- 930

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1083 nqfqnlknkflnrfqnqfpNFFSIFLRFLKK--KWALKIWKKIRQWALKIKKKikkiivkiivkvkiwiikikivksRKR 1160
Cdd:CHL00204  931 -------------------KKYFLVLKILKErtKLFLKVSKETKKWIIKSFLF------------------------LKR 967

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1161 IIKELTKITSNLLFFFlkkkVKVYEPN--TNGKDFQIKNKMNNESTIQIRSMNWTNYSLIekkrkvEKKRKDLSDRIITI 1238
Cdd:CHL00204  968 IIKELSKRNPILLFGL----REIYELNetKKEKDSIISNQMIHESSVQIRSMEWTNSSLT------EKKIKDLTDRTKTI 1037

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1239 RNQIEQITKDKKERVQT---------YDDKRLEYQKYIWQLFKRIkrnNIRFIRKLHYFIKFFIEKIYIDIFLRTINISR 1309
Cdd:CHL00204 1038 RNQIEKITKEKKKITNTinispnktsYDSKIIESSKKIWQILKRR---NTRLIRKSYYFIKFFIERIYIDIFLGIINIPR 1114

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1310 IHAQLFFESKKEMRNKSIYNNEINQEGIDETIQNTMDFISTVKKLDSNTNISDNNFNSDFDLSSLSQAYVFYKISQTPLL 1389
Cdd:CHL00204 1115 INTQLFLESTKKIIDKYIYKNEENKEKINKKKQNTIHFISTIKKSLYNISNKNKNSKIFYDLSSLSQAYVFYKLSQTQVI 1194

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1390 NKYNLRSVLQDRGTYHYLRGEIKDYCIKRGIFDYKSRHKKIQKSGMNEWKNWLKGHDQYNLSPAKWSRLAPKKWRSRVNK 1469
Cdd:CHL00204 1195 NLYKLRSVLQYNGTSFFLKNEIKDYFEAQGIFHSKLKHKNLLNSGMNQWKNWLRSHYQYDLSQIRWSRLVPQKWRNRVNQ 1274

                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1470 GRMIQKKDSMKLDSDKKEKIHHYMKENYYAGNSLKNQktKNKLKKHYGYNFFAHQYMNYGDKtdknlyiygsKLQVNGHQ 1549
Cdd:CHL00204 1275 DRMVQNKDLNKWDSYEKDRLIHYKKQNDFEANSLLNQ--KDNFKKDYRYDLLSYKSINYEDK----------KFQVNKNQ 1342

                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1550 EIPFN--TRKPDFFYVLVNAGINDLLKVKKSIAKDKNLDRKYFNCEIFHFCLRKNIDIETWTNTiesiETWTNTHVGTKI 1627
Cdd:CHL00204 1343 EISYNynTRKVNLFDMPEGIAINNYLGKGDILDIEKNPDRKYLDWRILNFSLRKKVDIESWVDT----DSKSKKNTKTGV 1418

                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1628 NkntktkthkyktethKYHKMEKKDvFINGKINPstPNQKRNFFDWIGMNKERFssnrhqNISISN-QFWLFPELVLLFN 1706
Cdd:CHL00204 1419 N---------------NYQIIDKID-HQDFENNQ--ANKKKNFFDWMGMNEEIL------NRPISNlEFWFFPEFVLLYN 1474

                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1707 TYKIKPWVIPIKLLLLDLHVNEDDshNKNINLNQKEYLE------LQLQNANQQKNEQQSQIGRGSD----------LRK 1770
Cdd:CHL00204 1475 TYKIKPWIIPIKLLLLNLNGNENV--NKKINQKKKGFIPsnekksIEIENRNQEEKEPAGQGELESDkekkgnlesvLSN 1552

                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1771 TKKDVEKDDVKSDVQkkenkkekdneEEEEEKDNEEEEEEKIDLFLKEFFLFQLRWVEPSHQLLFNNCDFFCYLLRLPDL 1850
Cdd:CHL00204 1553 QEKNIEEDYAESDIK-----------KRKNKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINP 1621

                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1851 KEFHISTIKKGDMRMDFMLmdrniemdiekdiekdmkkdmkknmkkdmkkdmkkdmkkdrekdiekdIEKEKLIPKLLND 1930
Cdd:CHL00204 1622 REIAISSIQRGEMSLDIMM------------------------------------------------IQKNLTLTELMKK 1653

                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1931 GILIIQQMRFFQNWDEKFLIYQIISISLADKSENQneTNGKCTKKRDVEKNNFDRSI----------------FLIPENI 1994
Cdd:CHL00204 1654 GILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQ--INQRYREKKYVDKKNFDESItkhqtitenrdknhydLLVPENI 1731

                        2090      2100      2110      2120      2130      2140      2150      2160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1995 LSTKRRRELRIRICLNSRNGNIVDINPVFFNENKMRNCGQFLNEDRYLntdvnniNTDVNNILKFKLLLWPNCRLEDLAC 2074
Cdd:CHL00204 1732 LSPKRRRELRILICFNSKNKNAVDRNSVFCNEKNVKNCGQVLDKKKDL-------DKDKNKLIKLKFFLWPNYRLEDLAC 1804

                        2170      2180
                  ....*....|....*....|....*...
gi 918020926 2075 MNRYWFDTNNGSRFSMLRIHMYPQFRIS 2102
Cdd:CHL00204 1805 MNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 5-2102 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1747.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926    5 SLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKEVSATTGFLTGQLMMFISIYYAPLHLALRRPHL 81
Cdd:CHL00204    6 SLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   82 ITVLVLPYFLFYFFWNNNNWNNfEYGSTTQNSMRNLNIQWVFLTNLIFQLFNHFRLPSSTLTRLVNIPMFRCNNKILFVT 161
Cdd:CHL00204   86 ITVLALPYLLFHFFWNNHKHFF-DYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVT 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  162 SSFVGWLIGHILFMKWVELLLFWIRKKNSIRS----------KSKLRNSMARVFSILLFITCIYSLGRMPSPIFTKKLKD 231
Cdd:CHL00204  165 SSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSnvlirsnkylVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKE 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  232 REKEKEEKKKEEERVKKEIDLEITSETKDEFKFHFNEINETRYKNETRYKDSPVYEdsyLDGYQDNwelgkLKDKKKTYp 311
Cdd:CHL00204  245 TSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDE---TEEIRVN-----GKEKIKKD- 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  312 RFGFEKPFLTFIFDYKRWNRPLRYIKNKKFENAIRNEISQYFFDTCPSDGKQKMSFTYPPSLSTFSEMIERKISLYTTEK 391
Cdd:CHL00204  316 LFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEK 395

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  392 LCHEDQYNYWVYTNEQKKYNLINEFISRIKGLEKGFLVLDMFEKRTRFCNDENEQECLPKMYDPFLNGPYRGKTNKneNE 471
Cdd:CHL00204  396 LSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKK--LF 473

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  472 SDSCINNLispiePIEDSIEMFCINKIYDLLLNNDNSREFEHQKNPIEERSELEERSEFEERSELEERSELEERSELEER 551
Cdd:CHL00204  474 SPSIINET-----SIKNNIEGVWINKIHGILLNNTDYQEFEQKIDTFNKKSLSTEINESLTLINKFGAEPKSSLNLKGLS 548

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  552 SELEERSELEEGSELEE---------------------------IRKKVSQWSYKLVDvmDLQEQAAAEEKErkkgtaag 604
Cdd:CHL00204  549 LFSEPEQEKINSEEEIKifkflfdavitdpndqtiikksigikeISKKVPRWSYKLID--ELEQLEGENEEN-------- 618

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  605 ikteekekekekkelTEEDADIRSRKFKRIVVWNTeaqkaekakqekkekmqaeralnplitprtprtprtptttptttl 684
Cdd:CHL00204  619 ---------------VPSDHQIRSRKAKRVVIFTD--------------------------------------------- 638

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  685 nptlnptptttttptpttttsttTSTNNHQEDEEKNKEKKKDDEEIAVLHYSYLPDFRRNLIKGSMRAQRRKIGIFEPFQ 764
Cdd:CHL00204  639 -----------------------NESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQ 695

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  765 VSVHSPLFLDRIDKTFVFSpLDIFKMTNIIFRNWVGRESEFQISDFEEEKDKKDKKDKKDKKEERKEKEKKEErkekdkk 844
Cdd:CHL00204  696 ANVHSPLFLDRIDKLFFFS-FDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARI------- 767

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  845 eerkekdkkdkkeerkekdkkdkkeerkekdkkdkkkeikekeekekkdkkdkkeerkekekkeqrEISEAWDSFVLAQA 924
Cdd:CHL00204  768 ------------------------------------------------------------------EIAEAWDSILFAQV 781

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  925 SRGLALVTQSFIRKRIILPLLIIVKNVGRMLLFQFPELTQDFKALNKEKHIKCTYNGISLSEKEFPQDWLRDGMQIKILY 1004
Cdd:CHL00204  782 IRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKILF 861

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1005 PFCLKPWKGAKIKVWSSFRRKSKKKRKFSF--LTVWGMETKVLFGSSRKSLNFFQPIYDELDKKKRKLKnqfknlknkfl 1082
Cdd:CHL00204  862 PFYLKPWHRSKLRSSHKDRMKKKKKKKNDFcfLTVWGMETELPFGSPRKRPSFFEPIFKELKKKIRKFK----------- 930

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1083 nqfqnlknkflnrfqnqfpNFFSIFLRFLKK--KWALKIWKKIRQWALKIKKKikkiivkiivkvkiwiikikivksRKR 1160
Cdd:CHL00204  931 -------------------KKYFLVLKILKErtKLFLKVSKETKKWIIKSFLF------------------------LKR 967

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1161 IIKELTKITSNLLFFFlkkkVKVYEPN--TNGKDFQIKNKMNNESTIQIRSMNWTNYSLIekkrkvEKKRKDLSDRIITI 1238
Cdd:CHL00204  968 IIKELSKRNPILLFGL----REIYELNetKKEKDSIISNQMIHESSVQIRSMEWTNSSLT------EKKIKDLTDRTKTI 1037

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1239 RNQIEQITKDKKERVQT---------YDDKRLEYQKYIWQLFKRIkrnNIRFIRKLHYFIKFFIEKIYIDIFLRTINISR 1309
Cdd:CHL00204 1038 RNQIEKITKEKKKITNTinispnktsYDSKIIESSKKIWQILKRR---NTRLIRKSYYFIKFFIERIYIDIFLGIINIPR 1114

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1310 IHAQLFFESKKEMRNKSIYNNEINQEGIDETIQNTMDFISTVKKLDSNTNISDNNFNSDFDLSSLSQAYVFYKISQTPLL 1389
Cdd:CHL00204 1115 INTQLFLESTKKIIDKYIYKNEENKEKINKKKQNTIHFISTIKKSLYNISNKNKNSKIFYDLSSLSQAYVFYKLSQTQVI 1194

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1390 NKYNLRSVLQDRGTYHYLRGEIKDYCIKRGIFDYKSRHKKIQKSGMNEWKNWLKGHDQYNLSPAKWSRLAPKKWRSRVNK 1469
Cdd:CHL00204 1195 NLYKLRSVLQYNGTSFFLKNEIKDYFEAQGIFHSKLKHKNLLNSGMNQWKNWLRSHYQYDLSQIRWSRLVPQKWRNRVNQ 1274

                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1470 GRMIQKKDSMKLDSDKKEKIHHYMKENYYAGNSLKNQktKNKLKKHYGYNFFAHQYMNYGDKtdknlyiygsKLQVNGHQ 1549
Cdd:CHL00204 1275 DRMVQNKDLNKWDSYEKDRLIHYKKQNDFEANSLLNQ--KDNFKKDYRYDLLSYKSINYEDK----------KFQVNKNQ 1342

                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1550 EIPFN--TRKPDFFYVLVNAGINDLLKVKKSIAKDKNLDRKYFNCEIFHFCLRKNIDIETWTNTiesiETWTNTHVGTKI 1627
Cdd:CHL00204 1343 EISYNynTRKVNLFDMPEGIAINNYLGKGDILDIEKNPDRKYLDWRILNFSLRKKVDIESWVDT----DSKSKKNTKTGV 1418

                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1628 NkntktkthkyktethKYHKMEKKDvFINGKINPstPNQKRNFFDWIGMNKERFssnrhqNISISN-QFWLFPELVLLFN 1706
Cdd:CHL00204 1419 N---------------NYQIIDKID-HQDFENNQ--ANKKKNFFDWMGMNEEIL------NRPISNlEFWFFPEFVLLYN 1474

                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1707 TYKIKPWVIPIKLLLLDLHVNEDDshNKNINLNQKEYLE------LQLQNANQQKNEQQSQIGRGSD----------LRK 1770
Cdd:CHL00204 1475 TYKIKPWIIPIKLLLLNLNGNENV--NKKINQKKKGFIPsnekksIEIENRNQEEKEPAGQGELESDkekkgnlesvLSN 1552

                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1771 TKKDVEKDDVKSDVQkkenkkekdneEEEEEKDNEEEEEEKIDLFLKEFFLFQLRWVEPSHQLLFNNCDFFCYLLRLPDL 1850
Cdd:CHL00204 1553 QEKNIEEDYAESDIK-----------KRKNKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINP 1621

                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1851 KEFHISTIKKGDMRMDFMLmdrniemdiekdiekdmkkdmkknmkkdmkkdmkkdmkkdrekdiekdIEKEKLIPKLLND 1930
Cdd:CHL00204 1622 REIAISSIQRGEMSLDIMM------------------------------------------------IQKNLTLTELMKK 1653

                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1931 GILIIQQMRFFQNWDEKFLIYQIISISLADKSENQneTNGKCTKKRDVEKNNFDRSI----------------FLIPENI 1994
Cdd:CHL00204 1654 GILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQ--INQRYREKKYVDKKNFDESItkhqtitenrdknhydLLVPENI 1731

                        2090      2100      2110      2120      2130      2140      2150      2160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1995 LSTKRRRELRIRICLNSRNGNIVDINPVFFNENKMRNCGQFLNEDRYLntdvnniNTDVNNILKFKLLLWPNCRLEDLAC 2074
Cdd:CHL00204 1732 LSPKRRRELRILICFNSKNKNAVDRNSVFCNEKNVKNCGQVLDKKKDL-------DKDKNKLIKLKFFLWPNYRLEDLAC 1804

                        2170      2180
                  ....*....|....*....|....*...
gi 918020926 2075 MNRYWFDTNNGSRFSMLRIHMYPQFRIS 2102
Cdd:CHL00204 1805 MNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 14-1060 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 845.34  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926    14 VVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKEVSATTGFLTGQLMMFISIYYAPLHLALRRPHLITVLVLPYF 90
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926    91 LFYFFWNNNNWNNfEYGSTTQNSMRNLNIQWVFLTNLIFQLFNHFRLPSSTLTRLVNIPMFRCNNKILFVTSSFVGWLIG 170
Cdd:pfam05758   81 LFHFFWNNHKHFF-DYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   171 HILFMKWVELLLFWIRKKNSIRSK----------SKLRNSMARVFSILLFITCIYSLGRMPSPIFTkklKDREKEKEEKK 240
Cdd:pfam05758  160 HILFMKWVGLVLVWIQQNNSIRSNvlirsnkylvSELRNSMARIFSILLFITCVYYLGRIPSPIFT---KKLKETSETEE 236

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   241 KEEERVKKEIDLEITSETK------------DEFKFHFNEINETRYK-----------------------NETRYKDSPV 285
Cdd:pfam05758  237 RYESEEETDVEIETTSETKgtkqeqersteeDPSPSLFSEEGEDLDKideteeirvngkdkikdefhfhfRETCYKNSPI 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   286 YEDSYLDGYQDNWELGKLKDKKKTYPRFGFEKPFLTFIFDYKRWNRPLRYIKNKKFENAIRNEISQYFFDTCPSDGKQKM 365
Cdd:pfam05758  317 YETSYLDGNQENSKLEILKEKKKNKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERI 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   366 SFTYPPSLSTFSEMIERKISLYTTEKLCHEDQYNYWVYTNEQKKYNLINEFISRIKGLEKGFLVLDMFEKRTRFCNDENE 445
Cdd:pfam05758  397 SFTYPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETK 476

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   446 QECLPKMYDPFLNGPYRGKTNKneNESDSCINNlispiEPIEDSIEMFCINKIYDLLLNNdNSREFEHQKNPIEERSELE 525
Cdd:pfam05758  477 KEYLPKIYDPFLNGPYRGRIKK--VFSPSIINK-----TSRKNSLEGVWINKIHGILLSS-NYPEFEQKINIFDRKSLST 548

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   526 ERSEFEERSELEERSELEERSEL---------------------------EERSELEERSELEEGSELEEIRKKVSQWSY 578
Cdd:pfam05758  549 EIDYFLNLINEFSKKSVSSLNFKglslfpeqeqvkinseeekkilkflfdAVRTDSNEKTIRKKSIGIKEINKKVPRWSY 628

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   579 KLVDVMDLQEqaaAEEKERkkgtaagikteekekekekkelTEEDADIRSRKFKRIVVWNTeaqkaekakqekkekmqae 658
Cdd:pfam05758  629 KLIDELEQLE---GENEEN----------------------VAEDYQIRSRKAKRVVIFTD------------------- 664

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   659 ralnplitprtprtprtptttptttlnptlnptptttttptpttttsttTSTNNHQEDEEKNKEKKKDDEEIAVLHYSYL 738
Cdd:pfam05758  665 -------------------------------------------------NQKNYDTYNNTKDTDNSEQKNEVALIRYSQQ 695

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   739 PDFRRNLIKGSMRAQRRKIGIFEPFQVSVHSPLFLDRIDKTFVFSpLDIFKMTNIIFRNWVGRESEFQISDFEEEKDKKD 818
Cdd:pfam05758  696 SDFRRDIIKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKPLFFS-FDIFGLIKIIFKNWMRKKEEFKISSYTEEKTKES 774

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   819 KKDKKDKKEERKEKEKKEErkekdkkeerkekdkkdkkeerkekdkkdkkeerkekdkkdkkkeikekeekekkdkkdkk 898
Cdd:pfam05758  775 SKKEEDKKEDNKREERARI------------------------------------------------------------- 793

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   899 eerkekekkeqrEISEAWDSFVLAQASRGLALVTQSFIRKRIILPLLIIVKNVGRMLLFQFPELTQDFKALNKEKHIKCT 978
Cdd:pfam05758  794 ------------EIAEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCT 861

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   979 YNGISLSEKEFPQDWLRDGMQIKILYPFCLKPWKGAKIKVWSSFRRKSKKKRKFS-FLTVWGMETKVLFGSSRKSLNFFQ 1057
Cdd:pfam05758  862 YNGVQLSETEFPKNWLTDGIQIKILFPFRLKPWHKSKLRSSEKDLMKKKVQKNDFcFLTVWGMETELPFGSPRKRPSFFE 941


                   ...
gi 918020926  1058 PIY 1060
Cdd:pfam05758  942 PIF 944
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 5-2102 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1747.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926    5 SLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKEVSATTGFLTGQLMMFISIYYAPLHLALRRPHL 81
Cdd:CHL00204    6 SLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   82 ITVLVLPYFLFYFFWNNNNWNNfEYGSTTQNSMRNLNIQWVFLTNLIFQLFNHFRLPSSTLTRLVNIPMFRCNNKILFVT 161
Cdd:CHL00204   86 ITVLALPYLLFHFFWNNHKHFF-DYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVT 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  162 SSFVGWLIGHILFMKWVELLLFWIRKKNSIRS----------KSKLRNSMARVFSILLFITCIYSLGRMPSPIFTKKLKD 231
Cdd:CHL00204  165 SSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSnvlirsnkylVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKE 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  232 REKEKEEKKKEEERVKKEIDLEITSETKDEFKFHFNEINETRYKNETRYKDSPVYEdsyLDGYQDNwelgkLKDKKKTYp 311
Cdd:CHL00204  245 TSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDE---TEEIRVN-----GKEKIKKD- 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  312 RFGFEKPFLTFIFDYKRWNRPLRYIKNKKFENAIRNEISQYFFDTCPSDGKQKMSFTYPPSLSTFSEMIERKISLYTTEK 391
Cdd:CHL00204  316 LFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEK 395

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  392 LCHEDQYNYWVYTNEQKKYNLINEFISRIKGLEKGFLVLDMFEKRTRFCNDENEQECLPKMYDPFLNGPYRGKTNKneNE 471
Cdd:CHL00204  396 LSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKK--LF 473

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  472 SDSCINNLispiePIEDSIEMFCINKIYDLLLNNDNSREFEHQKNPIEERSELEERSEFEERSELEERSELEERSELEER 551
Cdd:CHL00204  474 SPSIINET-----SIKNNIEGVWINKIHGILLNNTDYQEFEQKIDTFNKKSLSTEINESLTLINKFGAEPKSSLNLKGLS 548

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  552 SELEERSELEEGSELEE---------------------------IRKKVSQWSYKLVDvmDLQEQAAAEEKErkkgtaag 604
Cdd:CHL00204  549 LFSEPEQEKINSEEEIKifkflfdavitdpndqtiikksigikeISKKVPRWSYKLID--ELEQLEGENEEN-------- 618

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  605 ikteekekekekkelTEEDADIRSRKFKRIVVWNTeaqkaekakqekkekmqaeralnplitprtprtprtptttptttl 684
Cdd:CHL00204  619 ---------------VPSDHQIRSRKAKRVVIFTD--------------------------------------------- 638

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  685 nptlnptptttttptpttttsttTSTNNHQEDEEKNKEKKKDDEEIAVLHYSYLPDFRRNLIKGSMRAQRRKIGIFEPFQ 764
Cdd:CHL00204  639 -----------------------NESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQ 695

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  765 VSVHSPLFLDRIDKTFVFSpLDIFKMTNIIFRNWVGRESEFQISDFEEEKDKKDKKDKKDKKEERKEKEKKEErkekdkk 844
Cdd:CHL00204  696 ANVHSPLFLDRIDKLFFFS-FDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARI------- 767

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  845 eerkekdkkdkkeerkekdkkdkkeerkekdkkdkkkeikekeekekkdkkdkkeerkekekkeqrEISEAWDSFVLAQA 924
Cdd:CHL00204  768 ------------------------------------------------------------------EIAEAWDSILFAQV 781

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926  925 SRGLALVTQSFIRKRIILPLLIIVKNVGRMLLFQFPELTQDFKALNKEKHIKCTYNGISLSEKEFPQDWLRDGMQIKILY 1004
Cdd:CHL00204  782 IRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKILF 861

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1005 PFCLKPWKGAKIKVWSSFRRKSKKKRKFSF--LTVWGMETKVLFGSSRKSLNFFQPIYDELDKKKRKLKnqfknlknkfl 1082
Cdd:CHL00204  862 PFYLKPWHRSKLRSSHKDRMKKKKKKKNDFcfLTVWGMETELPFGSPRKRPSFFEPIFKELKKKIRKFK----------- 930

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1083 nqfqnlknkflnrfqnqfpNFFSIFLRFLKK--KWALKIWKKIRQWALKIKKKikkiivkiivkvkiwiikikivksRKR 1160
Cdd:CHL00204  931 -------------------KKYFLVLKILKErtKLFLKVSKETKKWIIKSFLF------------------------LKR 967

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1161 IIKELTKITSNLLFFFlkkkVKVYEPN--TNGKDFQIKNKMNNESTIQIRSMNWTNYSLIekkrkvEKKRKDLSDRIITI 1238
Cdd:CHL00204  968 IIKELSKRNPILLFGL----REIYELNetKKEKDSIISNQMIHESSVQIRSMEWTNSSLT------EKKIKDLTDRTKTI 1037

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1239 RNQIEQITKDKKERVQT---------YDDKRLEYQKYIWQLFKRIkrnNIRFIRKLHYFIKFFIEKIYIDIFLRTINISR 1309
Cdd:CHL00204 1038 RNQIEKITKEKKKITNTinispnktsYDSKIIESSKKIWQILKRR---NTRLIRKSYYFIKFFIERIYIDIFLGIINIPR 1114

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1310 IHAQLFFESKKEMRNKSIYNNEINQEGIDETIQNTMDFISTVKKLDSNTNISDNNFNSDFDLSSLSQAYVFYKISQTPLL 1389
Cdd:CHL00204 1115 INTQLFLESTKKIIDKYIYKNEENKEKINKKKQNTIHFISTIKKSLYNISNKNKNSKIFYDLSSLSQAYVFYKLSQTQVI 1194

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1390 NKYNLRSVLQDRGTYHYLRGEIKDYCIKRGIFDYKSRHKKIQKSGMNEWKNWLKGHDQYNLSPAKWSRLAPKKWRSRVNK 1469
Cdd:CHL00204 1195 NLYKLRSVLQYNGTSFFLKNEIKDYFEAQGIFHSKLKHKNLLNSGMNQWKNWLRSHYQYDLSQIRWSRLVPQKWRNRVNQ 1274

                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1470 GRMIQKKDSMKLDSDKKEKIHHYMKENYYAGNSLKNQktKNKLKKHYGYNFFAHQYMNYGDKtdknlyiygsKLQVNGHQ 1549
Cdd:CHL00204 1275 DRMVQNKDLNKWDSYEKDRLIHYKKQNDFEANSLLNQ--KDNFKKDYRYDLLSYKSINYEDK----------KFQVNKNQ 1342

                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1550 EIPFN--TRKPDFFYVLVNAGINDLLKVKKSIAKDKNLDRKYFNCEIFHFCLRKNIDIETWTNTiesiETWTNTHVGTKI 1627
Cdd:CHL00204 1343 EISYNynTRKVNLFDMPEGIAINNYLGKGDILDIEKNPDRKYLDWRILNFSLRKKVDIESWVDT----DSKSKKNTKTGV 1418

                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1628 NkntktkthkyktethKYHKMEKKDvFINGKINPstPNQKRNFFDWIGMNKERFssnrhqNISISN-QFWLFPELVLLFN 1706
Cdd:CHL00204 1419 N---------------NYQIIDKID-HQDFENNQ--ANKKKNFFDWMGMNEEIL------NRPISNlEFWFFPEFVLLYN 1474

                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1707 TYKIKPWVIPIKLLLLDLHVNEDDshNKNINLNQKEYLE------LQLQNANQQKNEQQSQIGRGSD----------LRK 1770
Cdd:CHL00204 1475 TYKIKPWIIPIKLLLLNLNGNENV--NKKINQKKKGFIPsnekksIEIENRNQEEKEPAGQGELESDkekkgnlesvLSN 1552

                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1771 TKKDVEKDDVKSDVQkkenkkekdneEEEEEKDNEEEEEEKIDLFLKEFFLFQLRWVEPSHQLLFNNCDFFCYLLRLPDL 1850
Cdd:CHL00204 1553 QEKNIEEDYAESDIK-----------KRKNKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINP 1621

                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1851 KEFHISTIKKGDMRMDFMLmdrniemdiekdiekdmkkdmkknmkkdmkkdmkkdmkkdrekdiekdIEKEKLIPKLLND 1930
Cdd:CHL00204 1622 REIAISSIQRGEMSLDIMM------------------------------------------------IQKNLTLTELMKK 1653

                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1931 GILIIQQMRFFQNWDEKFLIYQIISISLADKSENQneTNGKCTKKRDVEKNNFDRSI----------------FLIPENI 1994
Cdd:CHL00204 1654 GILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQ--INQRYREKKYVDKKNFDESItkhqtitenrdknhydLLVPENI 1731

                        2090      2100      2110      2120      2130      2140      2150      2160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926 1995 LSTKRRRELRIRICLNSRNGNIVDINPVFFNENKMRNCGQFLNEDRYLntdvnniNTDVNNILKFKLLLWPNCRLEDLAC 2074
Cdd:CHL00204 1732 LSPKRRRELRILICFNSKNKNAVDRNSVFCNEKNVKNCGQVLDKKKDL-------DKDKNKLIKLKFFLWPNYRLEDLAC 1804

                        2170      2180
                  ....*....|....*....|....*...
gi 918020926 2075 MNRYWFDTNNGSRFSMLRIHMYPQFRIS 2102
Cdd:CHL00204 1805 MNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 14-1060 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 845.34  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926    14 VVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKEVSATTGFLTGQLMMFISIYYAPLHLALRRPHLITVLVLPYF 90
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926    91 LFYFFWNNNNWNNfEYGSTTQNSMRNLNIQWVFLTNLIFQLFNHFRLPSSTLTRLVNIPMFRCNNKILFVTSSFVGWLIG 170
Cdd:pfam05758   81 LFHFFWNNHKHFF-DYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   171 HILFMKWVELLLFWIRKKNSIRSK----------SKLRNSMARVFSILLFITCIYSLGRMPSPIFTkklKDREKEKEEKK 240
Cdd:pfam05758  160 HILFMKWVGLVLVWIQQNNSIRSNvlirsnkylvSELRNSMARIFSILLFITCVYYLGRIPSPIFT---KKLKETSETEE 236

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   241 KEEERVKKEIDLEITSETK------------DEFKFHFNEINETRYK-----------------------NETRYKDSPV 285
Cdd:pfam05758  237 RYESEEETDVEIETTSETKgtkqeqersteeDPSPSLFSEEGEDLDKideteeirvngkdkikdefhfhfRETCYKNSPI 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   286 YEDSYLDGYQDNWELGKLKDKKKTYPRFGFEKPFLTFIFDYKRWNRPLRYIKNKKFENAIRNEISQYFFDTCPSDGKQKM 365
Cdd:pfam05758  317 YETSYLDGNQENSKLEILKEKKKNKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERI 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   366 SFTYPPSLSTFSEMIERKISLYTTEKLCHEDQYNYWVYTNEQKKYNLINEFISRIKGLEKGFLVLDMFEKRTRFCNDENE 445
Cdd:pfam05758  397 SFTYPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETK 476

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   446 QECLPKMYDPFLNGPYRGKTNKneNESDSCINNlispiEPIEDSIEMFCINKIYDLLLNNdNSREFEHQKNPIEERSELE 525
Cdd:pfam05758  477 KEYLPKIYDPFLNGPYRGRIKK--VFSPSIINK-----TSRKNSLEGVWINKIHGILLSS-NYPEFEQKINIFDRKSLST 548

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   526 ERSEFEERSELEERSELEERSEL---------------------------EERSELEERSELEEGSELEEIRKKVSQWSY 578
Cdd:pfam05758  549 EIDYFLNLINEFSKKSVSSLNFKglslfpeqeqvkinseeekkilkflfdAVRTDSNEKTIRKKSIGIKEINKKVPRWSY 628

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   579 KLVDVMDLQEqaaAEEKERkkgtaagikteekekekekkelTEEDADIRSRKFKRIVVWNTeaqkaekakqekkekmqae 658
Cdd:pfam05758  629 KLIDELEQLE---GENEEN----------------------VAEDYQIRSRKAKRVVIFTD------------------- 664

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   659 ralnplitprtprtprtptttptttlnptlnptptttttptpttttsttTSTNNHQEDEEKNKEKKKDDEEIAVLHYSYL 738
Cdd:pfam05758  665 -------------------------------------------------NQKNYDTYNNTKDTDNSEQKNEVALIRYSQQ 695

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   739 PDFRRNLIKGSMRAQRRKIGIFEPFQVSVHSPLFLDRIDKTFVFSpLDIFKMTNIIFRNWVGRESEFQISDFEEEKDKKD 818
Cdd:pfam05758  696 SDFRRDIIKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKPLFFS-FDIFGLIKIIFKNWMRKKEEFKISSYTEEKTKES 774

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   819 KKDKKDKKEERKEKEKKEErkekdkkeerkekdkkdkkeerkekdkkdkkeerkekdkkdkkkeikekeekekkdkkdkk 898
Cdd:pfam05758  775 SKKEEDKKEDNKREERARI------------------------------------------------------------- 793

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   899 eerkekekkeqrEISEAWDSFVLAQASRGLALVTQSFIRKRIILPLLIIVKNVGRMLLFQFPELTQDFKALNKEKHIKCT 978
Cdd:pfam05758  794 ------------EIAEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCT 861

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918020926   979 YNGISLSEKEFPQDWLRDGMQIKILYPFCLKPWKGAKIKVWSSFRRKSKKKRKFS-FLTVWGMETKVLFGSSRKSLNFFQ 1057
Cdd:pfam05758  862 YNGVQLSETEFPKNWLTDGIQIKILFPFRLKPWHKSKLRSSEKDLMKKKVQKNDFcFLTVWGMETELPFGSPRKRPSFFE 941


                   ...
gi 918020926  1058 PIY 1060
Cdd:pfam05758  942 PIF 944
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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