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Conserved domains on  [gi|91694466|gb|ABE41882|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Amazona ochrocephala ochrocephala]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl33352
NADH dehydrogenase subunit 2; Provisional
 1-170 8.58e-85

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00112:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 252.82  E-value: 8.58e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    1 ISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIA 80
Cdd:MTH00112   8 IITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDIT 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   81 QLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLNPILLTTMSIMSIILGGW 160
Cdd:MTH00112  88 QLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGW 167

                        170
                 ....*....|
gi 91694466  161 MGLNQTQTRK 170
Cdd:MTH00112 168 GGLNQTQLRK 177
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-170 8.58e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 252.82  E-value: 8.58e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    1 ISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIA 80
Cdd:MTH00112   8 IITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDIT 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   81 QLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLNPILLTTMSIMSIILGGW 160
Cdd:MTH00112  88 QLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGW 167

                        170
                 ....*....|
gi 91694466  161 MGLNQTQTRK 170
Cdd:MTH00112 168 GGLNQTQLRK 177
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-166 1.03e-15

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 73.23  E-value: 1.03e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   3 TLSILLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLF--------SSTIN--- 70
Cdd:COG1007 108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466  71 -AWHTGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKL----PPTTLLLITSHSLNP- 144
Cdd:COG1007 188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAd 267

                       170       180
                ....*....|....*....|....
gi 91694466 145 --ILLTTMSIMSIILGGWMGLNQT 166
Cdd:COG1007 268 wqLLLAVLAVLSMTVGNLAALAQT 291
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 16-170 2.32e-11

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 60.40  E-value: 2.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    16 SNHWTTAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL-TYPPAC----- 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    89 -----LLLTTAIATKLGLAPFHFWFPEVLQGSSLT-TALLLSTIMKLPP------TTLLLITSHSLNPILLtTMSIMSII 156
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirrSLLYLPSSPFIQQILL-ILAIISML 159

                         170
                  ....*....|....
gi 91694466   157 LGGWMGLNQTQTRK 170
Cdd:pfam00361 160 LGSLAALVQTDIKR 173
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-166 1.39e-09

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 55.72  E-value: 1.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466     4 LSILLGTTITITSNHWTTAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL 82
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    83 -----TYPP-------ACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLL-------ITSHSLN 143
Cdd:TIGR01770 189 llflsNGMLnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAW 268

                         170       180
                  ....*....|....*....|...
gi 91694466   144 PILLTTMSIMSIILGGWMGLNQT 166
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQK 291
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-170 8.58e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 252.82  E-value: 8.58e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    1 ISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIA 80
Cdd:MTH00112   8 IITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDIT 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   81 QLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLNPILLTTMSIMSIILGGW 160
Cdd:MTH00112  88 QLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGW 167

                        170
                 ....*....|
gi 91694466  161 MGLNQTQTRK 170
Cdd:MTH00112 168 GGLNQTQLRK 177
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 5-170 6.72e-69

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 212.47  E-value: 6.72e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    5 SILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLTY 84
Cdd:MTH00070  12 SLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQT 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   85 PPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLNPILLTTMSIMSIILGGWMGLN 164
Cdd:MTH00070  92 PLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLN 171


                 ....*.
gi 91694466  165 QTQTRK 170
Cdd:MTH00070 172 QTQLRK 177
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 4-170 3.52e-67

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 208.12  E-value: 3.52e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    4 LSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLT 83
Cdd:MTH00135  11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   84 YPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSlNPILLTTMSIMSIILGGWMGL 163
Cdd:MTH00135  91 HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGL 169


                 ....*..
gi 91694466  164 NQTQTRK 170
Cdd:MTH00135 170 NQTQLRK 176
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-170 7.90e-64

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 199.30  E-value: 7.90e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    1 ISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIA 80
Cdd:MTH00105   8 IIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTIT 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   81 QLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLNPILLTTMSIMSIILGGW 160
Cdd:MTH00105  88 KLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGW 167

                        170
                 ....*....|
gi 91694466  161 MGLNQTQTRK 170
Cdd:MTH00105 168 GGLNQTQLRK 177
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 4-170 4.89e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 171.69  E-value: 4.89e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    4 LSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLT 83
Cdd:MTH00200  11 LSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEML 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   84 YPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLNPILLTTMSIMSIILGGWMGL 163
Cdd:MTH00200  91 GPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGL 170


                 ....*..
gi 91694466  164 NQTQTRK 170
Cdd:MTH00200 171 NQTQLRK 177
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 4-170 7.36e-53

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 171.27  E-value: 7.36e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    4 LSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLT 83
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   84 YPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLNPILLTTMSIMSIILGGWMGL 163
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170


                 ....*..
gi 91694466  164 NQTQTRK 170
Cdd:MTH00041 171 NQTQTRK 177
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 6-170 3.43e-33

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 119.93  E-value: 3.43e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    6 ILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGqwdiaqLTYP 85
Cdd:MTH00160  14 LIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM------LFNN 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   86 PACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLlitSHSLNPILLTTMSIMSIILGGWMGLNQ 165
Cdd:MTH00160  88 ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGAIGGLNQ 164


                 ....*
gi 91694466  166 TQTRK 170
Cdd:MTH00160 165 TSLRK 169
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 6-169 2.12e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 109.59  E-value: 2.12e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    6 ILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAqltyp 85
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   86 pacLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPttLLLITSHSLNPILLTT---MSIMSIILGGWMG 162
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLSALVGSIGG 162


                 ....*..
gi 91694466  163 LNQTQTR 169
Cdd:MTH00144 163 LNQTQVR 169
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-169 1.02e-24

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 97.54  E-value: 1.02e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    5 SILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTInawhtgQWDIAQLTY 84
Cdd:MTH00011  14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   85 PPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLNPILLTTMSIMSIILGGWMGLN 164
Cdd:MTH00011  88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167


                 ....*
gi 91694466  165 QTQTR 169
Cdd:MTH00011 168 QTQLR 172
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 4-170 2.85e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 90.89  E-value: 2.85e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    4 LSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTgqwdiaqLT 83
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   84 YPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPttLLLITSHSLNPILLTTMSIMSIILGGWMGL 163
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGM 155


                 ....*..
gi 91694466  164 NQTQTRK 170
Cdd:MTH00197 156 NQSNIRQ 162
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 6-170 3.19e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 77.38  E-value: 3.19e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    6 ILLGTTITITSNHWTTAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLMLFS-------------STINA 71
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   72 WHTGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLppTTLLLITSHSLNPILLTTMS 151
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKL--GIFSILVSIGLNVNILLIGG 159

                        170
                 ....*....|....*....
gi 91694466  152 IMSIILGGWMGLNQTQTRK 170
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKR 178
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-166 1.03e-15

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 73.23  E-value: 1.03e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   3 TLSILLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLF--------SSTIN--- 70
Cdd:COG1007 108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466  71 -AWHTGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKL----PPTTLLLITSHSLNP- 144
Cdd:COG1007 188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAd 267

                       170       180
                ....*....|....*....|....
gi 91694466 145 --ILLTTMSIMSIILGGWMGLNQT 166
Cdd:COG1007 268 wqLLLAVLAVLSMTVGNLAALAQT 291
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 4-170 6.33e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 68.12  E-value: 6.33e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    4 LSILLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDI--- 79
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqgi 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   80 -AQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLNPILLTtmSIMSIILG 158
Cdd:MTH00199 184 nSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYG 261

                        170
                 ....*....|..
gi 91694466  159 GWMGLNQTQTRK 170
Cdd:MTH00199 262 AIGALNQTKIKR 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
7-166 1.05e-13

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 67.54  E-value: 1.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    7 LLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL--- 82
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   83 -----TYPP----ACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKL----PPTTLLLITSHSLNP---IL 146
Cdd:PRK05777 193 ladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEdwqQV 272

                        170       180
                 ....*....|....*....|
gi 91694466  147 LTTMSIMSIILGGWMGLNQT 166
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQT 292
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 8-170 1.47e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 61.41  E-value: 1.47e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    8 LGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAI---------EAATKYFLVQAAASTLMLFSSTINAWHTGQ-- 76
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   77 ------------WDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLppTTLLLITSHSLNP 144
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180
                 ....*....|....*....|....*.
gi 91694466  145 ILLTTMSIMSIILGGWMGLNQTQTRK 170
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKR 382
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 16-170 2.32e-11

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 60.40  E-value: 2.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    16 SNHWTTAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL-TYPPAC----- 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    89 -----LLLTTAIATKLGLAPFHFWFPEVLQGSSLT-TALLLSTIMKLPP------TTLLLITSHSLNPILLtTMSIMSII 156
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirrSLLYLPSSPFIQQILL-ILAIISML 159

                         170
                  ....*....|....
gi 91694466   157 LGGWMGLNQTQTRK 170
Cdd:pfam00361 160 LGSLAALVQTDIKR 173
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-166 1.39e-09

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 55.72  E-value: 1.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466     4 LSILLGTTITITSNHWTTAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL 82
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    83 -----TYPP-------ACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLL-------ITSHSLN 143
Cdd:TIGR01770 189 llflsNGMLnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAW 268

                         170       180
                  ....*....|....*....|...
gi 91694466   144 PILLTTMSIMSIILGGWMGLNQT 166
Cdd:TIGR01770 269 QIFLAIIAFLSMLIGNFGALAQK 291
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 7-166 1.57e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 49.76  E-value: 1.57e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   7 LLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL---- 82
Cdd:COG0651 117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarl 196

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466  83 -TYPP-----ACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIM-KLPP----TTLLLITSHSLNP---ILLT 148
Cdd:COG0651 197 aELDPglllaAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailRVLTLLFGADPALflgTLLL 276

                       170
                ....*....|....*...
gi 91694466 149 TMSIMSIILGGWMGLNQT 166
Cdd:COG0651 277 VLGLLTMLVGALGALAQR 294
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 31-166 2.04e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 49.31  E-value: 2.04e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466  31 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQW-----DIAQLTYPPA-----CLLLTTAIAT 97
Cdd:COG1008 142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466  98 KLGLAPFHFWFPEVLQGSSLTTALLLSTIMK-----------LPpttLLLITSHSLNPILLtTMSIMSIILGGWMGLNQT 166
Cdd:COG1008 222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLA-ALGVIGIIYGALVALAQT 297
ndhB CHL00049
NADH dehydrogenase subunit 2
 44-166 5.16e-06

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 45.38  E-value: 5.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   44 RAIEAATKYFLVQAAASTLML--FSST--INAWHTGQWDIA------QLTYPPACLL----LTTAIATKLGLAPFHFWFP 109
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIVnglintQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 91694466  110 EVLQGSSLTTALLLSTIMKLPPTTLL-----LITSHSLNP--ILLTTMSIMSIILGGWMGLNQT 166
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALAtrifdIPFYFSSNEwhLLLEILAILSMILGNLIAITQT 302
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
43-166 6.89e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 45.04  E-value: 6.89e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   43 PRAIEAATKYFLVQAAASTLMLFSST----INAWHTGQWDIAQL----TYPPACLLLTTAIAT---KLGLAPFHFWFPEV 111
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALAlitsPSLGLALALVFVIAGiafKISAVPFHQWTPDV 236

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 91694466  112 LQGSSLTTALLLSTIMKLPPTTL---LLITSHSLNP----ILLTTMSIMSIILGGWMGLNQT 166
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDeqwkLLFTALAILSMVLGNVVALAQT 298
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 26-169 4.61e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 39.48  E-value: 4.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   26 LEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLT--YPPACLLLT------TAIAT 97
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   98 KLGLAPFHFWFPEVLQG-SSLTTALLLSTIMKLPPTTLLLITSH----------SLNPILLTTMsIMSIILGGWMGLNQT 166
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfrfalGLGWLLAVLA-LLSMLVGSLAALGQD 293


                 ...
gi 91694466  167 QTR 169
Cdd:PRK08375 294 DVK 296
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 43-166 5.08e-04

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 39.54  E-value: 5.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    43 PRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQW----DIAQLTYPPAC-----LLLTTAIATKLGLAPFHFWFPEV-L 112
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 91694466   113 QGSSLTTALLLSTIMKLPPTTLLLI-------TSHSLNPILLtTMSIMSIILGGWMGLNQT 166
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAPVLA-ALGVIAIIYGALIALAQT 291
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 13-137 1.12e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 38.37  E-value: 1.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   13 TITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYF---------------LVQAAASTLM------LFSSTINA 71
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMgdgemaILWTELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   72 wHTGQWDIAQLTYPPACLLLttAIATKLGLAPFHFWFPE-----------VLQGSSLTTAL---------LLSTIMKLPP 131
Cdd:PRK06458 204 -HASLLDPTLMKLAFVFLLI--GFGTKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyavlryyilIDAAIGSDFP 280


                 ....*.
gi 91694466  132 TTLLLI 137
Cdd:PRK06458 281 GRLLLI 286
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 31-166 2.33e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 37.49  E-value: 2.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   31 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASTLMLFS----STINAWHTGQWDIAQLTYPPACLLLTT--------AI 95
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   96 ATKLGLAPFHFWFPEVLQ-----GSSLTTALLLST------IMKLPpttLLLITSHSLNPILLtTMSIMSIILGGWMGLN 164
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVqaptaGSVLLAGILLKMgaygllRFSLP---LFPDASHEFAPIII-TLGVIAIIYGALVALA 297


                 ..
gi 91694466  165 QT 166
Cdd:PRK05846 298 QT 299
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 26-126 4.13e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 37.00  E-value: 4.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466   26 LEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLTY----------PPACLLLTTA 94
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVkmsenptvvaKIALALFIAG 229

                         90       100       110
                 ....*....|....*....|....*....|....
gi 91694466   95 IATKLGLAPFHFWFPEVLQG--SSLTTALLLSTI 126
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQ 263
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
7-122 4.17e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 36.99  E-value: 4.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694466    7 LLGTTITITSNHWTT---AWAGLEI---NTLSIIPmisksHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIA 80
Cdd:PRK08168 110 LAAVHLLVLSDHLLVliaAWAAISLalhRLLCFYP-----DRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 91694466   81 QL-----TYPP------ACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALL 122
Cdd:PRK08168 185 ALwahlaAQGAspslqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALL 237
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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