|
Name |
Accession |
Description |
Interval |
E-value |
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
6-325 |
2.61e-111 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 326.24 E-value: 2.61e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIggmlRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTP---DGGDIILNGRsysD 82
Cdd:COG0444 1 LLEVRNLKVYFPT----RRGVVKAVDGVSFDVRRGE--TLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGE---D 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KNGYDPKQFKL----DVQPIFQNPYESFSPRKAVDTYLYNTALKLGIAKNmEEAKQKADEALKSVGMSLAV-VQGKYSAQ 157
Cdd:COG0444 72 LLKLSEKELRKirgrEIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGGLSK-AEARERAIELLERVGLPDPErRLDRYPHE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 158 FSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLI 237
Cdd:COG0444 151 LSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIV 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 238 EYGPAKELMDYPAHPYTELLMEAVPRVGDKWNQEFVMP-DMESKEYALTCCKFAPRCPYATDECRQNKPGEVAIEGGRSV 316
Cdd:COG0444 231 EEGPVEELFENPRHPYTRALLSSIPRLDPDGRRLIPIPgEPPSLLNPPSGCRFHPRCPYAMDRCREEEPPLREVGPGHRV 310
|
....*....
gi 916601733 317 YCFHPLKAA 325
Cdd:COG0444 311 ACHLYEEEA 319
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-325 |
1.32e-100 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 299.34 E-value: 1.32e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANDYLLEVKGVSKVFRI-GGMLRGKKMT--AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNG 77
Cdd:COG4608 2 AMAEPLLEVRDLKKHFPVrGGLFGRTVGVvkAVDGVSFDIRRGE--TLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 78 RSYSDKNGYDPKQFKLDVQPIFQNPYESFSPRKAVDTYLyntALKLGIAKNM--EEAKQKADEALKSVGMSLAVVQgKYS 155
Cdd:COG4608 80 QDITGLSGRELRPLRRRMQMVFQDPYASLNPRMTVGDII---AEPLRIHGLAskAERRERVAELLELVGLRPEHAD-RYP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 156 AQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGG 235
Cdd:COG4608 156 HEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGK 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 236 LIEYGPAKELMDYPAHPYTELLMEAVPRvgdkwnqefVMPDMESKEYALTC-----------CKFAPRCPYATDECRQNK 304
Cdd:COG4608 236 IVEIAPRDELYARPLHPYTQALLSAVPV---------PDPERRRERIVLEGdvpsplnppsgCRFHTRCPYAQDRCATEE 306
|
330 340
....*....|....*....|.
gi 916601733 305 PGEVAIEGGRSVYCFHPLKAA 325
Cdd:COG4608 307 PPLREVGPGHQVACHLAEEGS 327
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
6-264 |
1.27e-94 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 290.27 E-value: 1.27e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGgmlRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNG 85
Cdd:COG1123 260 LLEVRNLSKRYPVR---GKGGVRAVDDVSLTLRRGE--TLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPKQFKLDVQPIFQNPYESFSPRKAVDTYLYNTALKLGIAkNMEEAKQKADEALKSVGMSLAVVQgKYSAQFSGGELQR 165
Cdd:COG1123 335 RSLRELRRRVQMVFQDPYSSLNPRMTVGDIIAEPLRLHGLL-SRAERRERVAELLERVGLPPDLAD-RYPHELSGGQRQR 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 166 VSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:COG1123 413 VAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEV 492
|
250
....*....|....*....
gi 916601733 246 MDYPAHPYTELLMEAVPRV 264
Cdd:COG1123 493 FANPQHPYTRALLAAVPSL 511
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
6-240 |
1.20e-82 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 250.12 E-value: 1.20e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGGMlrgkKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNG 85
Cdd:cd03257 1 LLEVKNLSVSFPTGGG----SVKALDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGK---DLLK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPKQFKL---DVQPIFQNPYESFSPRKAVDTYLYNTALKLGIAKNMEEAKQKADEALKSVGMSLAVVQgKYSAQFSGGE 162
Cdd:cd03257 72 LSRRLRKIrrkEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLN-RYPHELSGGQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYG 240
Cdd:cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
6-263 |
7.81e-81 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 246.25 E-value: 7.81e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGGmlRGKkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKng 85
Cdd:COG1124 1 MLEVRNLSVSYGQGG--RRV--PVLKDVSLEVAPGE--SFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRR-- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 yDPKQFKLDVQPIFQNPYESFSPRKAVDTYLyNTALKLgiaKNMEEAKQKADEALKSVGMSLAVVqGKYSAQFSGGELQR 165
Cdd:COG1124 73 -RRKAFRRRVQMVFQDPYASLHPRHTVDRIL-AEPLRI---HGLPDREERIAELLEQVGLPPSFL-DRYPHQLSGGQRQR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 166 VSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:COG1124 147 VAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADL 226
|
250
....*....|....*...
gi 916601733 246 MDYPAHPYTELLMEAVPR 263
Cdd:COG1124 227 LAGPKHPYTRELLAASLA 244
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
2-320 |
1.41e-76 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 237.94 E-value: 1.41e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 2 ANDYLLEVKGVSKVFRI-GGMLRGKKMT-AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRS 79
Cdd:PRK11308 1 SQQPLLQAIDLKKHYPVkRGLFKPERLVkALDGVSFTLERGK--TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 80 YSDKNGYDPKQFKLDVQPIFQNPYESFSPRKAVDTYL-----YNTALklgiakNMEEAKQKADEALKSVGMSlAVVQGKY 154
Cdd:PRK11308 79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILeepllINTSL------SAAERREKALAMMAKVGLR-PEHYDRY 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 155 SAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRG 234
Cdd:PRK11308 152 PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLG 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 235 GLIEYGPAKELMDYPAHPYTELLMEAVPRVGdkwnqefvmPDMESKEYALT-----------CCKFAPRCPYATDECRQN 303
Cdd:PRK11308 232 RCVEKGTKEQIFNNPRHPYTQALLSATPRLN---------PDDRRERIKLTgelpsplnpppGCAFNARCPRAFGRCRQE 302
|
330
....*....|....*..
gi 916601733 304 KPgEVAIEGGRSVYCFH 320
Cdd:PRK11308 303 QP-QLRDYDGRLVACFA 318
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
6-264 |
1.46e-73 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 236.50 E-value: 1.46e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRI-GGMLRGKK--MTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHtPDGGDIILNGRSYSD 82
Cdd:COG4172 275 LLEARDLKVWFPIkRGLFRRTVghVKAVDGVSLTLRRGE--TLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDG 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KNGYDPKQFKLDVQPIFQNPYESFSPRKAVDTYLYNTALKLGIAKNMEEAKQKADEALKSVGMSLAVVQgKYSAQFSGGE 162
Cdd:COG4172 352 LSRRALRPLRRRMQVVFQDPFGSLSPRMTVGQIIAEGLRVHGPGLSAAERRARVAEALEEVGLDPAARH-RYPHEFSGGQ 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPA 242
Cdd:COG4172 431 RQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPT 510
|
250 260
....*....|....*....|..
gi 916601733 243 KELMDYPAHPYTELLMEAVPRV 264
Cdd:COG4172 511 EQVFDAPQHPYTRALLAAAPLL 532
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
6-320 |
8.58e-67 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 213.03 E-value: 8.58e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGG-----MLRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsy 80
Cdd:PRK15079 8 LLEVADLKVHFDIKDgkqwfWQPPKTLKAVDGVTLRLYEGE--TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGK-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 sDKNGYDPKQFKL---DVQPIFQNPYESFSPRKAVDTYL------YNTALKlgiaknMEEAKQKADEALKSVGMsLAVVQ 151
Cdd:PRK15079 84 -DLLGMKDDEWRAvrsDIQMIFQDPLASLNPRMTIGEIIaeplrtYHPKLS------RQEVKDRVKAMMLKVGL-LPNLI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 152 GKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATL 231
Cdd:PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 232 YRGGLIEYGPAKELMDYPAHPYTELLMEAVPrVGDkwnqefvmPDME-SKEYAL------------TCCKFAPRCPYATD 298
Cdd:PRK15079 236 YLGHAVELGTYDEVYHNPLHPYTKALMSAVP-IPD--------PDLErNKTIQLlegelpspinppSGCVFRTRCPIAGP 306
|
330 340
....*....|....*....|....
gi 916601733 299 ECRQNKPgevAIEGG--RSVYCFH 320
Cdd:PRK15079 307 ECAKTRP---VLEGSfrHAVSCLK 327
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
6-260 |
3.54e-62 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 198.91 E-value: 3.54e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIG-GMLRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR--SYSD 82
Cdd:COG4167 4 LLEVRNLSKTFKYRtGLFRRQQFEAVKPVSFTLEAGQ--TLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHklEYGD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 kngYdpKQFKLDVQPIFQNPYESFSPRKAVDTYLyNTALKLGIAKNMEEAKQKADEALKSVGMsLAVVQGKYSAQFSGGE 162
Cdd:COG4167 82 ---Y--KYRCKHIRMIFQDPNTSLNPRLNIGQIL-EEPLRLNTDLTAEEREERIFATLRLVGL-LPEHANFYPHMLSSGQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPA 242
Cdd:COG4167 155 KQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYGKT 234
|
250
....*....|....*...
gi 916601733 243 KELMDYPAHPYTELLMEA 260
Cdd:COG4167 235 AEVFANPQHEVTKRLIES 252
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
6-261 |
8.54e-56 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 182.70 E-value: 8.54e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGGMLRGKKMTAV-DNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN 84
Cdd:TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVlTNVSLSIEEGETVGL--LGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 GYDPKQFKLDVQPIFQNPYESFSPRKAVDTYLYNTALKLgiaKNMEEAKQKA--DEALKSVGMSLAVVQgKYSAQFSGGE 162
Cdd:TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL---TSLDESEQKAriAELLDMVGLRSEDAD-KLPRQLSGGQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPA 242
Cdd:TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235
|
250
....*....|....*....
gi 916601733 243 KELMDYpAHPYTELLMEAV 261
Cdd:TIGR02769 236 AQLLSF-KHPAGRNLQSAV 253
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
6-262 |
8.03e-52 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 180.82 E-value: 8.03e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRI-GGMLR--GKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSD 82
Cdd:PRK10261 313 ILQVRNLVTRFPLrSGLLNrvTREVHAVEKVSFDLWPGE--TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KNGYDPKQFKLDVQPIFQNPYESFSPRKAVDtYLYNTALKLGIAKNMEEAKQKADEALKSVGMsLAVVQGKYSAQFSGGE 162
Cdd:PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVG-DSIMEPLRVHGLLPGKAAAARVAWLLERVGL-LPEHAWRYPHEFSGGQ 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPA 242
Cdd:PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPR 548
|
250 260
....*....|....*....|
gi 916601733 243 KELMDYPAHPYTELLMEAVP 262
Cdd:PRK10261 549 RAVFENPQHPYTRKLMAAVP 568
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
29-325 |
2.20e-51 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 173.00 E-value: 2.20e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLhtpdggdIILNGRSYSDK---NGYDPKQFK---------LDVQ 96
Cdd:PRK11022 22 AVDRISYSVKQGE--VVGIVGESGSGKSVSSLAIMGL-------IDYPGRVMAEKlefNGQDLQRISekerrnlvgAEVA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 97 PIFQNPYESFSPRKAVDtYLYNTALKLGIAKNMEEAKQKADEALKSVGM-----SLAVvqgkYSAQFSGGELQRVSIARA 171
Cdd:PRK11022 93 MIFQDPMTSLNPCYTVG-FQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIpdpasRLDV----YPHQLSGGMSQRVMIAMA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 172 LITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAH 251
Cdd:PRK11022 168 IACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRH 247
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 252 PYTELLMEAVPRVGDKWNQEFVMPDMESKEYAL-TCCKFAPRCPYATDECRQNKPgEVAIEGGRSVYCFHPLKAA 325
Cdd:PRK11022 248 PYTQALLRALPEFAQDKARLASLPGVVPGKYDRpNGCLLNPRCPYATDRCRAEEP-ALNMLAGRQSKCHYPLDDA 321
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
6-324 |
3.95e-51 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 172.60 E-value: 3.95e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIggmlRGKKMTAVD--NVSLKIGKdkpvILSIVGESGCGKSTLCKMILKLHTPDG---GDIILNGR-- 78
Cdd:PRK09473 12 LLDVKDLRVTFST----PDGDVTAVNdlNFSLRAGE----TLGIVGESGSGKSQTAFALMGLLAANGrigGSATFNGRei 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 79 ---SYSDKNGYDPKQFKLdvqpIFQNPYESFSPRKAVDTYLYNTAL---KLGIAKNMEEAKQKAD-----EALKSVGMsl 147
Cdd:PRK09473 84 lnlPEKELNKLRAEQISM----IFQDPMTSLNPYMRVGEQLMEVLMlhkGMSKAEAFEESVRMLDavkmpEARKRMKM-- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 148 avvqgkYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDY 227
Cdd:PRK09473 158 ------YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDK 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 228 IATLYRGGLIEYGPAKELMDYPAHPYTELLMEAVPRVGDKWNQEFVMPDMESKEYAL-TCCKFAPRCPYATDECRQNKPG 306
Cdd:PRK09473 232 VLVMYAGRTMEYGNARDVFYQPSHPYSIGLLNAVPRLDAEGESLLTIPGNPPNLLRLpKGCPFQPRCPHAMEICSSAPPL 311
|
330
....*....|....*...
gi 916601733 307 EvAIEGGRSVYCFHPLKA 324
Cdd:PRK09473 312 E-EFGPGRLRACFKPVEE 328
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
6-271 |
3.11e-50 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 168.43 E-value: 3.11e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRI-GGMLRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR--SYSD 82
Cdd:PRK15112 4 LLEVRNLSKTFRYrTGWFRRQTVEAVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHplHFGD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KnGYDPKQFKLdvqpIFQNPYESFSPRKAVDTYLyNTALKLGIAKNMEEAKQKADEALKSVGMsLAVVQGKYSAQFSGGE 162
Cdd:PRK15112 82 Y-SYRSQRIRM----IFQDPSTSLNPRQRISQIL-DFPLRLNTDLEPEQREKQIIETLRQVGL-LPDHASYYPHMLAPGQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPA 242
Cdd:PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGST 234
|
250 260 270
....*....|....*....|....*....|..
gi 916601733 243 KELMDYPAHPYTELLMEA---VPRVGDKWNQE 271
Cdd:PRK15112 235 ADVLASPLHELTKRLIAGhfgEALTADAWRKD 266
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
6-267 |
6.94e-50 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 173.55 E-value: 6.94e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDG---GDIILNGRsysD 82
Cdd:COG1123 4 LLEVRDLSVRYPGGDV------PAVDGVSLTIAPGE--TVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGR---D 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KNGYDPKQFKLDVQPIFQNPYESFSPRKaVDTYLYNTALKLGIAKnmEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGE 162
Cdd:COG1123 73 LLELSEALRGRRIGMVFQDPMTQLNPVT-VGDQIAEALENLGLSR--AEARARVLELLEAVG--LERRLDRYPHQLSGGQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPA 242
Cdd:COG1123 148 RQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPP 227
|
250 260
....*....|....*....|....*
gi 916601733 243 KELMDYPAhpytelLMEAVPRVGDK 267
Cdd:COG1123 228 EEILAAPQ------ALAAVPRLGAA 246
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
2-253 |
1.28e-49 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 165.54 E-value: 1.28e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 2 ANDYLLEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYS 81
Cdd:COG1127 1 MSEPMIEVRNLTKSF-------GDR-VVLDGVSLDVPRGE--ILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDIT 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 82 DKNGYDPKQFKLDVQPIFQNP--YESFSprkaVdtyLYNTALKLGIAKNM--EEAKQKADEALKSVGmsLAVVQGKYSAQ 157
Cdd:COG1127 71 GLSEKELYELRRRIGMLFQGGalFDSLT----V---FENVAFPLREHTDLseAEIRELVLEKLELVG--LPGAADKMPSE 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 158 FSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLI 237
Cdd:COG1127 142 LSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKII 221
|
250
....*....|....*.
gi 916601733 238 EYGPAKELMDYPaHPY 253
Cdd:COG1127 222 AEGTPEELLASD-DPW 236
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
6-261 |
1.82e-49 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 166.40 E-value: 1.82e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGGMLRGKK-MTAVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN 84
Cdd:PRK10419 3 LLNVSGLSHHYAHGGLSGKHQhQTVLNNVSLSLKSGETVAL--LGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 GYDPKQFKLDVQPIFQNPYESFSPRKAVDTYLYNTALKLgiaKNMEEAKQ--KADEALKSVGMSLAVVQgKYSAQFSGGE 162
Cdd:PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL---LSLDKAERlaRASEMLRAVDLDDSVLD-KRPPQLSGGQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPA 242
Cdd:PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236
|
250
....*....|....*....
gi 916601733 243 KELMDYpAHPYTELLMEAV 261
Cdd:PRK10419 237 GDKLTF-SSPAGRVLQNAV 254
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
6-252 |
2.97e-49 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 164.68 E-value: 2.97e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRiggmLRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNG 85
Cdd:cd03258 1 MIELKNVSKVFG----DTGGKVTALKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPKQFKLDVQPIFQNpYESFSPRKAVDtylyNTALKLGIAK-NMEEAKQKADEALKSVGMSlavvqGK---YSAQFSGG 161
Cdd:cd03258 75 KELRKARRRIGMIFQH-FNLLSSRTVFE----NVALPLEIAGvPKAEIEERVLELLELVGLE-----DKadaYPAQLSGG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 162 ELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGP 241
Cdd:cd03258 145 QKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
|
250
....*....|.
gi 916601733 242 AKELMdypAHP 252
Cdd:cd03258 225 VEEVF---ANP 232
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
6-253 |
3.18e-49 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 167.97 E-value: 3.18e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkng 85
Cdd:COG3842 5 ALELENVSKRY-------GDV-TALDDVSLSIEPGE--FVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTG--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 ydpkqfkldVQP-------IFQN----P----YEsfsprkavdtylyNTA--LKL-GIAKnmEEAKQKADEALKSVGMS- 146
Cdd:COG3842 72 ---------LPPekrnvgmVFQDyalfPhltvAE-------------NVAfgLRMrGVPK--AEIRARVAELLELVGLEg 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 147 LAvvqGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDA----SMKMNIVNLFKELkdkyNISFIYITHDLSTAY 222
Cdd:COG3842 128 LA---DRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALDAklreEMREELRRLQREL----GITFIYVTHDQEEAL 200
|
250 260 270
....*....|....*....|....*....|.
gi 916601733 223 YVSDYIATLYRGGLIEYGPAKELMDYPAHPY 253
Cdd:COG3842 201 ALADRIAVMNDGRIEQVGTPEEIYERPATRF 231
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
7-237 |
4.40e-49 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 163.43 E-value: 4.40e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRIGGmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:cd03255 1 IELKNLSKTYGGGG----EKVQALKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLD-VQPIFQNPY--ESFSprkAVDtylyNTALKLGIAKN-MEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGE 162
Cdd:cd03255 75 ELAAFRRRhIGFVFQSFNllPDLT---ALE----NVELPLLLAGVpKKERRERAEELLERVG--LGDRLNHYPSELSGGQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYvSDYIATLyRGGLI 237
Cdd:cd03255 146 QQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEY-ADRIIEL-RDGKI 218
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
6-238 |
1.81e-47 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 159.82 E-value: 1.81e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGGMlrgkKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR---SYSD 82
Cdd:COG1136 4 LLELRNLTKSYGTGEG----EVTALRGVSLSIEAGE--FVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQdisSLSE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KN---------GYdpkqfkldvqpIFQNPY--ESFSprkAVDtylyNTALKLGIAK-NMEEAKQKADEALKSVGmsLAVV 150
Cdd:COG1136 78 RElarlrrrhiGF-----------VFQFFNllPELT---ALE----NVALPLLLAGvSRKERRERARELLERVG--LGDR 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 151 QGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYvSDYIAT 230
Cdd:COG1136 138 LDHRPSQLSGGQQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAAR-ADRVIR 216
|
....*...
gi 916601733 231 LYRGGLIE 238
Cdd:COG1136 217 LRDGRIVS 224
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
7-246 |
1.31e-46 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 157.49 E-value: 1.31e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSkvFRIGGmlrgkKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNgy 86
Cdd:COG1122 1 IELENLS--FSYPG-----GTPALDDVSLSIEKGE--FVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKN-- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 dPKQFKLDVQPIFQNP---------YE--SFSPRkavdtylyNtalkLGIAKnmEEAKQKADEALKSVGMS-LAvvqGKY 154
Cdd:COG1122 70 -LRELRRKVGLVFQNPddqlfaptvEEdvAFGPE--------N----LGLPR--EEIRERVEEALELVGLEhLA---DRP 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 155 SAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRG 234
Cdd:COG1122 132 PHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDG 210
|
250
....*....|..
gi 916601733 235 GLIEYGPAKELM 246
Cdd:COG1122 211 RIVADGTPREVF 222
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
7-231 |
3.90e-46 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 156.09 E-value: 3.90e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRiggmLRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN-- 84
Cdd:cd03293 1 LEVRNVSKTYG----GGGGAVTALEDISLSVEEGE--FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGpd 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 -GYdpkqfkldvqpIFQNPYeSFsPRKAVdtyLYNTALKL---GIAKnmEEAKQKADEALKSVGmsLAVVQGKYSAQFSG 160
Cdd:cd03293 75 rGY-----------VFQQDA-LL-PWLTV---LDNVALGLelqGVPK--AEARERAEELLELVG--LSGFENAYPHQLSG 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 161 GELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATL 231
Cdd:cd03293 135 GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-263 |
6.75e-46 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 163.32 E-value: 6.75e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANDYLLEVKGVSKVFRIGGMLRgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHtPDG-----GDIIL 75
Cdd:COG4172 1 MMSMPLLSVEDLSVAFGQGGGTV----EAVKGVSFDIAAGE--TLALVGESGSGKSVTALSILRLL-PDPaahpsGSILF 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 76 NGRsysDKNGYDPKQF-KL---DVQPIFQNPYESFSPRKAVDTYLYNT-ALKLGIAKnmEEAKQKADEALKSVGmsLAVV 150
Cdd:COG4172 74 DGQ---DLLGLSERELrRIrgnRIAMIFQEPMTSLNPLHTIGKQIAEVlRLHRGLSG--AAARARALELLERVG--IPDP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 151 QGKYSA---QFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDY 227
Cdd:COG4172 147 ERRLDAyphQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADR 226
|
250 260 270
....*....|....*....|....*....|....*.
gi 916601733 228 IATLYRGGLIEYGPAKELMDYPAHPYTELLMEAVPR 263
Cdd:COG4172 227 VAVMRQGEIVEQGPTAELFAAPQHPYTRKLLAAEPR 262
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
7-247 |
3.98e-45 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 154.07 E-value: 3.98e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngy 86
Cdd:COG1131 1 IEVRGLTKRY-------GDK-TALDGVSLTVEPGE--IFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVAR---- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQNP--YESFSPRKAVDTY--LYntalklGIAKnmEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGE 162
Cdd:COG1131 67 DPAEVRRRIGYVPQEPalYPDLTVRENLRFFarLY------GLPR--KEARERIDELLELFG--LTDAADRKVGTLSGGM 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPA 242
Cdd:COG1131 137 KQRLGLALALLHDPELLILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTP 215
|
....*
gi 916601733 243 KELMD 247
Cdd:COG1131 216 DELKA 220
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
7-240 |
4.05e-45 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 153.06 E-value: 4.05e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRiggmlrgkKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKngy 86
Cdd:cd03259 1 LELKGLSKTYG--------SVRALDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV--- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 dPKQfKLDVQPIFQNpYESFSPRKAVDtylyNTALKLGIAKNME-EAKQKADEALKSVGMSLavVQGKYSAQFSGGELQR 165
Cdd:cd03259 68 -PPE-RRNIGMVFQD-YALFPHLTVAE----NIAFGLKLRGVPKaEIRARVRELLELVGLEG--LLNRYPHELSGGQQQR 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 166 VSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYG 240
Cdd:cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
7-250 |
1.10e-43 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 150.08 E-value: 1.10e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNGY 86
Cdd:cd03300 1 IELENVSKFY--GGF------VALDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGK---DITNL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPkqFKLDVQPIFQNpYESFsPRKAVDTylyNTALKLGIAK-NMEEAKQKADEALKSVGMS-LAvvqGKYSAQFSGGELQ 164
Cdd:cd03300 68 PP--HKRPVNTVFQN-YALF-PHLTVFE---NIAFGLRLKKlPKAEIKERVAEALDLVQLEgYA---NRKPSQLSGGQQQ 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 165 RVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKE 244
Cdd:cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEE 217
|
....*.
gi 916601733 245 LMDYPA 250
Cdd:cd03300 218 IYEEPA 223
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
7-245 |
1.51e-43 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 149.64 E-value: 1.51e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLH-----TPDGGDIILNGRSYS 81
Cdd:cd03260 1 IELRDLNVYY-------GDK-HALKDISLDIPKGE--ITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKDIY 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 82 DKNgYDPKQFKLDVQPIFQNPyesfSP-RKAV-DTYLYntALKLGIAKNMEEAKQKADEALKSVGMSLAVVQGKYSAQFS 159
Cdd:cd03260 71 DLD-VDVLELRRRVGMVFQKP----NPfPGSIyDNVAY--GLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLS 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNIsfIYITHDLSTAYYVSDYIATLYRGGLIEY 239
Cdd:cd03260 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTI--VIVTHNMQQAARVADRTAFLLNGRLVEF 221
|
....*.
gi 916601733 240 GPAKEL 245
Cdd:cd03260 222 GPTEQI 227
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
6-226 |
1.59e-43 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 150.63 E-value: 1.59e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRiggmLRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN- 84
Cdd:COG1116 7 ALELRGVSKRFP----TGGGGVTALDDVSLTVAAGE--FVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 --GYdpkqfkldvqpIFQNPYesfsprkavdtyLY-------NTALKLGIAK-NMEEAKQKADEALKSVGmsLAVVQGKY 154
Cdd:COG1116 81 drGV-----------VFQEPA------------LLpwltvldNVALGLELRGvPKAERRERARELLELVG--LAGFEDAY 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 916601733 155 SAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSD 226
Cdd:COG1116 136 PHQLSGGMRQRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLAD 207
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
7-253 |
2.06e-43 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 149.57 E-value: 2.06e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:cd03261 1 IELRGLTKSF-------GGR-TVLKGVDLDVRRGE--ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQNP--YESFSPRKAVDTYLY-NTALKLgiaknmEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGEL 163
Cdd:cd03261 71 ELYRLRRRMGMLFQSGalFDSLTVFENVAFPLReHTRLSE------EEIREIVLEKLEAVG--LRGAEDLYPAELSGGMK 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 164 QRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAK 243
Cdd:cd03261 143 KRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE 222
|
250
....*....|
gi 916601733 244 ELMDYPaHPY 253
Cdd:cd03261 223 ELRASD-DPL 231
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-247 |
2.98e-43 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 149.47 E-value: 2.98e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANDYLLEVKGVSkvFRIGGMlrgkkmTAVDNVSLKIgkDKPVILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSY 80
Cdd:COG1121 1 MMMMPAIELENLT--VSYGGR------PVLEDVSLTI--PPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 SDKN---GYDPKQFKLDVQ-PIfqnpyesfSPRKAVDTYLYNtalKLGIAKNM-EEAKQKADEALKSVGMS-LAvvqgky 154
Cdd:COG1121 71 RRARrriGYVPQRAEVDWDfPI--------TVRDVVLMGRYG---RRGLFRRPsRADREAVDEALERVGLEdLA------ 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 155 SAQF---SGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKdKYNISFIYITHDLSTAYYVSDYIATL 231
Cdd:COG1121 134 DRPIgelSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELR-REGKTILVVTHDLGAVREYFDRVLLL 212
|
250
....*....|....*.
gi 916601733 232 yRGGLIEYGPAKELMD 247
Cdd:COG1121 213 -NRGLVAHGPPEEVLT 227
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
6-263 |
4.07e-43 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 156.02 E-value: 4.07e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGGMLRgkkmTAVDNVSLKIgkDKPVILSIVGESGCGKSTLCKMILKL-HTPD----GGDIILNGRSY 80
Cdd:PRK15134 5 LLAIENLSVAFRQQQTVR----TVVNDVSLQI--EAGETLALVGESGSGKSVTALSILRLlPSPPvvypSGDIRFHGESL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 SDKNGYDPKQFKLD-VQPIFQNPYESFSPRKAVDTYLYNT-ALKLGIAKnmEEAKQKADEALKSVGMSLAVVQ-GKYSAQ 157
Cdd:PRK15134 79 LHASEQTLRGVRGNkIAMIFQEPMVSLNPLHTLEKQLYEVlSLHRGMRR--EAARGEILNCLDRVGIRQAAKRlTDYPHQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 158 FSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLI 237
Cdd:PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236
|
250 260
....*....|....*....|....*.
gi 916601733 238 EYGPAKELMDYPAHPYTELLMEAVPR 263
Cdd:PRK15134 237 EQNRAATLFSAPTHPYTQKLLNSEPS 262
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
29-260 |
4.68e-42 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 145.97 E-value: 4.68e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPdgGDIILNGRSYSDKNGYDPKQFK-LDVQPIFQNPYESFS 107
Cdd:TIGR02770 1 LVQDLNLSLKRGE--VLALVGESGSGKSLTCLAILGLLPP--GLTQTSGEILLDGRPLLPLSIRgRHIATIMQNPRTAFN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 108 PRKAVDTYLYNTALKLGIAKNmeEAKQKADEALKSVGM-SLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVA 186
Cdd:TIGR02770 77 PLFTMGNHAIETLRSLGKLSK--QARALILEALEAVGLpDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 187 AIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHPYTELLMEA 260
Cdd:TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSA 228
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-253 |
4.80e-41 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 146.37 E-value: 4.80e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANdylLEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsy 80
Cdd:COG3839 1 MAS---LELENVSKSY-------GGV-EALKDIDLDIEDGE--FLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGR-- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 sDKNGYDPKqfKLDVQPIFQNPyesfsprkAvdtyLY-------NTA--LKL-GIAKnmEEAKQKADEALKSVGMS-LAv 149
Cdd:COG3839 66 -DVTDLPPK--DRNIAMVFQSY--------A----LYphmtvyeNIAfpLKLrKVPK--AEIDRRVREAAELLGLEdLL- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 150 vqGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDA----SMKMNIVNLFKELKdkynISFIYITHDLSTAYYVS 225
Cdd:COG3839 128 --DRKPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNLDAklrvEMRAEIKRLHRRLG----TTTIYVTHDQVEAMTLA 201
|
250 260
....*....|....*....|....*...
gi 916601733 226 DYIATLYRGGLIEYGPAKELMDYPAHPY 253
Cdd:COG3839 202 DRIAVMNDGRIQQVGTPEELYDRPANLF 229
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
7-255 |
7.52e-41 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 143.21 E-value: 7.52e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrGKKMTAVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNGY 86
Cdd:cd03295 1 IEFENVTKRY-------GGGKKAVNNLNLEIAKGEFLVL--IGPSGSGKTTTMKMINRLIEPTSGEIFIDGE---DIREQ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQN----PYEsfsprkavdTYLYNTALKLGIAK-NMEEAKQKADEALKSVGMSLAVVQGKYSAQFSGG 161
Cdd:cd03295 69 DPVELRRKIGYVIQQiglfPHM---------TVEENIALVPKLLKwPKEKIRERADELLALVGLDPAEFADRYPHELSGG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 162 ELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGP 241
Cdd:cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
|
250
....*....|....
gi 916601733 242 AKELMDYPAHPYTE 255
Cdd:cd03295 220 PDEILRSPANDFVA 233
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-250 |
5.14e-40 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 143.71 E-value: 5.14e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANDYLLEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSY 80
Cdd:PRK11432 1 MTQKNFVVLKNITKRF-------GSN-TVIDNLNLTIKQGTMVTL--LGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 SDKNgydpKQFKlDVQPIFQNpYESFSPRKAVDTYLYntALK-LGIAKnmEEAKQKADEALKSVgmSLAVVQGKYSAQFS 159
Cdd:PRK11432 71 THRS----IQQR-DICMVFQS-YALFPHMSLGENVGY--GLKmLGVPK--EERKQRVKEALELV--DLAGFEDRYVDQIS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEY 239
Cdd:PRK11432 139 GGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI 218
|
250
....*....|.
gi 916601733 240 GPAKELMDYPA 250
Cdd:PRK11432 219 GSPQELYRQPA 229
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
7-234 |
1.07e-39 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 138.09 E-value: 1.07e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:cd03229 1 LELKNVSKRY--------GQKTVLNDVSLNIEAGE--IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQfKLDVQPIFQNPyeSFSPRKAVdtyLYNTALKLgiaknmeeakqkadealksvgmslavvqgkysaqfSGGELQRV 166
Cdd:cd03229 71 LPPL-RRRIGMVFQDF--ALFPHLTV---LENIALGL-----------------------------------SGGQQQRV 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 167 SIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRG 234
Cdd:cd03229 110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
6-261 |
1.25e-39 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 140.18 E-value: 1.25e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSkvFRIGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkng 85
Cdd:COG1120 1 MLEAENLS--VGYGGR------PVLDDVSLSLPPGE--VTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLAS--- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPKQF--KLDVQPIFQNPYESFSPRKAVdtYLYNTALKLGIAKNMEEAKQKADEALKSVGMS-LAvvqGKYSAQFSGGE 162
Cdd:COG1120 68 LSRRELarRIAYVPQEPPAPFGLTVRELV--ALGRYPHLGLFGRPSAEDREAVEEALERTGLEhLA---DRPVDELSGGE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPA 242
Cdd:COG1120 143 RQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPP 222
|
250
....*....|....*....
gi 916601733 243 KELMdypahpyTELLMEAV 261
Cdd:COG1120 223 EEVL-------TPELLEEV 234
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
6-221 |
1.85e-39 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 138.64 E-value: 1.85e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRiggmlRGKKMTAV-DNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN 84
Cdd:TIGR02211 1 LLKCENLGKRYQ-----EGKLDTRVlKGVSLSIGKGE--IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 GYDPKQFK-LDVQPIFQnpyesFSPRKAVDTYLYNTALKLGIA-KNMEEAKQKADEALKSVGMSLAVvqGKYSAQFSGGE 162
Cdd:TIGR02211 74 SNERAKLRnKKLGFIYQ-----FHHLLPDFTALENVAMPLLIGkKSVKEAKERAYEMLEKVGLEHRI--NHRPSELSGGE 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTA 221
Cdd:TIGR02211 147 RQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA 205
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
7-253 |
1.97e-39 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 139.40 E-value: 1.97e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKngy 86
Cdd:cd03296 3 IEVRNVSKRF--------GDFVALDDVSLDIPSGELVAL--LGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDV--- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQfkLDVQPIFQNpYESFSPRKAVDtylyNTALKLGIAKNME-----EAKQKADEALKSVGmsLAVVQGKYSAQFSGG 161
Cdd:cd03296 70 PVQE--RNVGFVFQH-YALFRHMTVFD----NVAFGLRVKPRSErppeaEIRAKVHELLKLVQ--LDWLADRYPAQLSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 162 ELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGP 241
Cdd:cd03296 141 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
250
....*....|..
gi 916601733 242 AKELMDYPAHPY 253
Cdd:cd03296 221 PDEVYDHPASPF 232
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
6-248 |
2.28e-39 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 139.36 E-value: 2.28e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriggmlrGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNG 85
Cdd:TIGR02315 1 MLEVENLSKVY-------PNGKQALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPKQFKLDVQPIFQNpYESFSPRKAVDTYL-----YNTALKLGIAKNMEEAKQKADEALKSVGMS-LAVvqgKYSAQFS 159
Cdd:TIGR02315 72 KKLRKLRRRIGMIFQH-YNLIERLTVLENVLhgrlgYKPTWRSLLGRFSEEDKERALSALERVGLAdKAY---QRADQLS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEY 239
Cdd:TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227
|
....*....
gi 916601733 240 GPAKELMDY 248
Cdd:TIGR02315 228 GAPSELDDE 236
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
7-263 |
2.94e-39 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 141.37 E-value: 2.94e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRIGGmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:COG1135 2 IELENLSKTFPTKG----GPVTALDDVSLTIEKGE--IFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSER 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQNpyesF---SPRKAVDtylyNTALKLGIAK-NMEEAKQKADEALKSVGMSlavvqGK---YSAQFS 159
Cdd:COG1135 76 ELRAARRKIGMIFQH----FnllSSRTVAE----NVALPLEIAGvPKAEIRKRVAELLELVGLS-----DKadaYPSQLS 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEY 239
Cdd:COG1135 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQ 222
|
250 260
....*....|....*....|....
gi 916601733 240 GPAKELMDYPAHPYTELLMEAVPR 263
Cdd:COG1135 223 GPVLDVFANPQSELTRRFLPTVLN 246
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
8-234 |
2.94e-39 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 137.98 E-value: 2.94e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 8 EVKGVSkvFRIGGMLRgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNgyd 87
Cdd:cd03225 1 ELKNLS--FSYPDGAR----PALDDISLTIKKGE--FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS--- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 88 PKQFKLDVQPIFQNPyesfsprkavDTYLYNT--------ALK-LGIAKnmEEAKQKADEALKSVGMSlaVVQGKYSAQF 158
Cdd:cd03225 70 LKELRRKVGLVFQNP----------DDQFFGPtveeevafGLEnLGLPE--EEIEERVEEALELVGLE--GLRDRSPFTL 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 159 SGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRG 234
Cdd:cd03225 136 SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
31-240 |
1.24e-38 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 136.27 E-value: 1.24e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 31 DNVSLKIGKDKPV-ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNgydpKQFKLDVQP-----IFQNpYE 104
Cdd:cd03297 11 PDFTLKIDFDLNEeVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSR----KKINLPPQQrkiglVFQQ-YA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 105 SFsPRKAVDTylyNTALKLGIAKNMEEaKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEP 184
Cdd:cd03297 86 LF-PHLNVRE---NLAFGLKRKRNRED-RISVDELLDLLG--LDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 185 VAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYG 240
Cdd:cd03297 159 FSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
8-284 |
4.31e-38 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 138.40 E-value: 4.31e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 8 EVKGVSKVFRIGGmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR---SYSDKn 84
Cdd:PRK11153 3 ELKNISKVFPQGG----RTIHALNNVSLHIPAGE--IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQdltALSEK- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 gyDPKQFKLDVQPIFQNpyesF---SPRKAVDtylyNTALKLGIA-KNMEEAKQKADEALKSVGmsLAVVQGKYSAQFSG 160
Cdd:PRK11153 76 --ELRKARRQIGMIFQH----FnllSSRTVFD----NVALPLELAgTPKAEIKARVTELLELVG--LSDKADRYPAQLSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 161 GELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYG 240
Cdd:PRK11153 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 916601733 241 PAKELMDYPAHPYT-ELLMEAVPRVGDKWNQEFVMPDMESKEYAL 284
Cdd:PRK11153 224 TVSEVFSHPKHPLTrEFIQSTLHLDLPEDYLARLQAEPTTGSGPL 268
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
30-249 |
4.73e-38 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 135.54 E-value: 4.73e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIGKDKPVIlsIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNGYDPKqfKLDVQPIFQNpYESFsPR 109
Cdd:cd03299 15 LKNVSLEVERGDYFV--ILGPTGSGKSVLLETIAGFIKPDSGKILLNGK---DITNLPPE--KRDISYVPQN-YALF-PH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 110 KAVDTylyNTALKLGIAKNM-EEAKQKADEALKSVGMSLavVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAI 188
Cdd:cd03299 86 MTVYK---NIAYGLKKRKVDkKEIERKVLEIAEMLGIDH--LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 189 DASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYP 249
Cdd:cd03299 161 DVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
7-236 |
6.79e-38 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 132.91 E-value: 6.79e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngy 86
Cdd:cd03230 1 IEVRNLSKRY--------GKKTALDDISLTVEKGE--IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK---- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQNP--YESFSPRkavdtylyntalklgiaknmeeakqkadEALKsvgmslavvqgkysaqFSGGELQ 164
Cdd:cd03230 67 EPEEVKRRIGYLPEEPslYENLTVR----------------------------ENLK----------------LSGGMKQ 102
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 916601733 165 RVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGL 236
Cdd:cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
28-253 |
7.21e-38 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 138.25 E-value: 7.21e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 28 TAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKngydPKQfKLDVQPIFQNpYESFs 107
Cdd:TIGR03265 18 TALKDISLSVKKGE--FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL----PPQ-KRDYGIVFQS-YALF- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 108 PRKAVdtyLYNTALKL-GIAKNMEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVA 186
Cdd:TIGR03265 89 PNLTV---ADNIAYGLkNRGMGRAEVAERVAELLDLVG--LPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 916601733 187 AIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHPY 253
Cdd:TIGR03265 164 ALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
|
| 3a0106s01 |
TIGR00968 |
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions] |
7-264 |
9.48e-38 |
|
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]
Pssm-ID: 130041 [Multi-domain] Cd Length: 237 Bit Score: 134.93 E-value: 9.48e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNGY 86
Cdd:TIGR00968 1 IEIANISKRF--------GSFQALDDVNLEVPTGSLVAL--LGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ---DATRV 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVqpIFQNpYESFSPRKAVDtylyNTALKLGIAK-NMEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQR 165
Cdd:TIGR00968 68 HARDRKIGF--VFQH-YALFKHLTVRD----NIAFGLEIRKhPKAKIKARVEELLELVQ--LEGLGDRYPNQLSGGQRQR 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 166 VSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
250
....*....|....*....
gi 916601733 246 MDYPAHPYTELLMEAVPRV 264
Cdd:TIGR00968 219 YDHPANPFVMSFLGEVNVL 237
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
28-234 |
1.37e-37 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 133.43 E-value: 1.37e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 28 TAVDNVSLKIgkDKPVILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN---GYDPKQFKLDVQ-PIfqnpy 103
Cdd:cd03235 13 PVLEDVSFEV--KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERkriGYVPQRRSIDRDfPI----- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 104 esfSPRKAVDTYLYNTALKLGIAKnmEEAKQKADEALKSVGMSlavvqgKYS----AQFSGGELQRVSIARALITRPKLI 179
Cdd:cd03235 86 ---SVRDVVLMGLYGHKGLFRRLS--KADKAKVDEALERVGLS------ELAdrqiGELSGGQQQRVLLARALVQDPDLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 180 IADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRG 234
Cdd:cd03235 155 LLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
6-259 |
2.19e-37 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 140.23 E-value: 2.19e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRI-GGMLR---GKKmTAVDNVS--LKIGKDkpviLSIVGESGCGKSTLCKMILKLhTPDGGDIILNGRS 79
Cdd:PRK15134 275 LLDVEQLQVAFPIrKGILKrtvDHN-VVVKNISftLRPGET----LGLVGESGSGKSTTGLALLRL-INSQGEIWFDGQP 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 80 YsdkNGYDPKQ---FKLDVQPIFQNPYESFSPRKAVdtyLYNTALKLGIAK---NMEEAKQKADEALKSVGMSLAVVQgK 153
Cdd:PRK15134 349 L---HNLNRRQllpVRHRIQVVFQDPNSSLNPRLNV---LQIIEEGLRVHQptlSAAQREQQVIAVMEEVGLDPETRH-R 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 154 YSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYR 233
Cdd:PRK15134 422 YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501
|
250 260
....*....|....*....|....*.
gi 916601733 234 GGLIEYGPAKELMDYPAHPYTELLME 259
Cdd:PRK15134 502 GEVVEQGDCERVFAAPQQEYTRQLLA 527
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
7-234 |
5.71e-37 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 131.99 E-value: 5.71e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrgKKMTAVDNVSLKIgKDKPvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNGY 86
Cdd:cd03301 1 VELENVTKRF--------GNVTALDDLNLDI-ADGE-FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR---DVTDL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKqfKLDVQPIFQNpYESFsPRKAVdtylY-NTALKLGIAKnmeEAKQKADEALKSVGMSLAVVQ--GKYSAQFSGGEL 163
Cdd:cd03301 68 PPK--DRDIAMVFQN-YALY-PHMTV----YdNIAFGLKLRK---VPKDEIDERVREVAELLQIEHllDRKPKQLSGGQR 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 164 QRVSIARALITRPKLIIADEPVAAIDA----SMKMNIVNLFKELKdkynISFIYITHDLSTAYYVSDYIATLYRG 234
Cdd:cd03301 137 QRVALGRAIVREPKVFLMDEPLSNLDAklrvQMRAELKRLQQRLG----TTTIYVTHDQVEAMTMADRIAVMNDG 207
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
30-186 |
6.48e-37 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 129.69 E-value: 6.48e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNGYDPKQFKLDVQPIFQNPyeSFSPR 109
Cdd:pfam00005 1 LKNVSLTLNPGE--ILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQ---DLTDDERKSLRKEIGYVFQDP--QLFPR 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 110 KAVDTYLYNTALKLGIAKnmEEAKQKADEALKSVGMS--LAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVA 186
Cdd:pfam00005 74 LTVRENLRLGLLLKGLSK--REKDARAEEALEKLGLGdlADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
6-252 |
7.34e-37 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 132.43 E-value: 7.34e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKnG 85
Cdd:COG1126 1 MIEIENLHKSF--------GDLEVLKGISLDVEKGE--VVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDS-K 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPKQFKLDVQPIFQNpYESFsPRKAVdtyLYNTALKLGIAKNM--EEAKQKADEALKSVGmsLAVVQGKYSAQFSGGEL 163
Cdd:COG1126 70 KDINKLRRKVGMVFQQ-FNLF-PHLTV---LENVTLAPIKVKKMskAEAEERAMELLERVG--LADKADAYPAQLSGGQQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 164 QRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAK 243
Cdd:COG1126 143 QRVAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPE 221
|
....*....
gi 916601733 244 ELMDYPAHP 252
Cdd:COG1126 222 EFFENPQHE 230
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
7-247 |
2.14e-36 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 131.15 E-value: 2.14e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRiggmlRGKKmtAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:cd03256 1 IEVENLSKTYP-----NGKK--ALKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQNpyesfsprkavdtylYNTALKLGIAKNM-------------------EEAKQKADEALKSVGMSl 147
Cdd:cd03256 72 ALRQLRRQIGMIFQQ---------------FNLIERLSVLENVlsgrlgrrstwrslfglfpKEEKQRALAALERVGLL- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 148 avvqGKYSA---QFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYV 224
Cdd:cd03256 136 ----DKAYQradQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREY 211
|
250 260
....*....|....*....|...
gi 916601733 225 SDYIATLYRGGLIEYGPAKELMD 247
Cdd:cd03256 212 ADRIVGLKDGRIVFDGPPAELTD 234
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
26-322 |
2.29e-36 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 133.49 E-value: 2.29e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 26 KMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPdggdiilNGRSYSDK---NGYD------PKQFKL--- 93
Cdd:COG4170 19 RVKAVDRVSLTLNEGE--IRGLVGESGSGKSLIAKAICGITKD-------NWHVTADRfrwNGIDllklspRERRKIigr 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 94 DVQPIFQNPYESFSPRKAVDTYLY----NTALKLGIAKNMEEAKQKADEALKSVGM-SLAVVQGKYSAQFSGGELQRVSI 168
Cdd:COG4170 90 EIAMIFQEPSSCLDPSAKIGDQLIeaipSWTFKGKWWQRFKWRKKRAIELLHRVGIkDHKDIMNSYPHELTEGECQKVMI 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 169 ARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDY 248
Cdd:COG4170 170 AMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQILKS 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 249 PAHPYTELLMEAVPRVGDkwnqefvmpDMESKEYaLTC--------------CKFAPRCPYATDECRQnKPGEVAIEgGR 314
Cdd:COG4170 250 PHHPYTKALLRSMPDFRQ---------PLPHKSR-LNTlpgsipplqhlpigCRLGPRCPYAQKKCVE-TPRLRKIK-GH 317
|
....*...
gi 916601733 315 SVYCFHPL 322
Cdd:COG4170 318 EFACHFPL 325
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
7-228 |
2.86e-36 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 129.96 E-value: 2.86e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYsDKNGY 86
Cdd:cd03262 1 IEIKNLHKSF-------GDF-HVLKGIDLTVKKGE--VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKL-TDDKK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQNpYESFsPRKAVdtyLYNTALKLGIAKNM--EEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQ 164
Cdd:cd03262 70 NINELRQKVGMVFQQ-FNLF-PHLTV---LENITLAPIKVKGMskAEAEERALELLEKVG--LADKADAYPAQLSGGQQQ 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 165 RVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKdKYNISFIYITHDLSTAYYVSDYI 228
Cdd:cd03262 143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA-EEGMTMVVVTHEMGFAREVADRV 205
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
7-254 |
3.90e-36 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 133.35 E-value: 3.90e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysdkngy 86
Cdd:COG1118 3 IEVRNISKRF--------GSFTLLDDVSLEIASGE--LVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGR-------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 dpkQFKLDVQP-------IFQNP--------YEsfsprkavdtylyNTALKLGIAK-NMEEAKQKADEALKSVGMS-LAv 149
Cdd:COG1118 65 ---DLFTNLPPrerrvgfVFQHYalfphmtvAE-------------NIAFGLRVRPpSKAEIRARVEELLELVQLEgLA- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 150 vqGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIA 229
Cdd:COG1118 128 --DRYPSQLSGGQRQRVALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVV 205
|
250 260
....*....|....*....|....*
gi 916601733 230 TLYRGGLIEYGPAKELMDYPAHPYT 254
Cdd:COG1118 206 VMNQGRIEQVGTPDEVYDRPATPFV 230
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
6-265 |
2.58e-35 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 135.37 E-value: 2.58e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriggMLRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDI-----ILNGRSY 80
Cdd:PRK10261 12 VLAVENLNIAF----MQEQQKIAAVRNLSFSLQRGE--TLAIVGESGSGKSVTALALMRLLEQAGGLVqcdkmLLRRRSR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 S--DKNGYDPKQFK----LDVQPIFQNPYESFSPRKAVDTYLYNTaLKLGIAKNMEEAKQKADEALKSVGMSLA-VVQGK 153
Cdd:PRK10261 86 QviELSEQSAAQMRhvrgADMAMIFQEPMTSLNPVFTVGEQIAES-IRLHQGASREEAMVEAKRMLDQVRIPEAqTILSR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 154 YSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYR 233
Cdd:PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244
|
250 260 270
....*....|....*....|....*....|..
gi 916601733 234 GGLIEYGPAKELMDYPAHPYTELLMEAVPRVG 265
Cdd:PRK10261 245 GEAVETGSVEQIFHAPQHPYTRALLAAVPQLG 276
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
7-250 |
3.19e-35 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 127.94 E-value: 3.19e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNGY 86
Cdd:cd03219 1 LEVRGLTKRF--GGL------VALDDVSFSVRPGE--IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE---DITGL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQF-KLDVQPIFQNP--YESFSPRK----AVDTYLYNTALKLGIAKNMEEAKQKADEALKSVGmsLAVVQGKYSAQFS 159
Cdd:cd03219 68 PPHEIaRLGIGRTFQIPrlFPELTVLEnvmvAAQARTGSGLLLARARREEREARERAEELLERVG--LADLADRPAGELS 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEY 239
Cdd:cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224
|
250
....*....|.
gi 916601733 240 GPAKELMDYPA 250
Cdd:cd03219 225 GTPDEVRNNPR 235
|
|
| PhnK |
COG4107 |
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and ... |
6-261 |
4.48e-35 |
|
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and metabolism];
Pssm-ID: 443283 [Multi-domain] Cd Length: 262 Bit Score: 128.39 E-value: 4.48e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGGMLRgkkmTAVDNVSLKI--GKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDK 83
Cdd:COG4107 8 LLSVRGLSKRYGPGCGTV----VACRDVSFDLypGE----VLGIVGESGSGKSTLLKCLYFDLAPTSGSVYYRDRDGGPR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 84 NgydpkQFKLDVQP-----------IFQNPYE----SFSPrkavdtyLYNTALKLgIA---KNMEEAKQKADEALKSVGM 145
Cdd:COG4107 80 D-----LFALSEAErrrlrrtdwgmVYQNPRDglrmDVSA-------GGNIAERL-MAageRHYGDIRARALEWLERVEI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 146 SLAVVQgKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVS 225
Cdd:COG4107 147 PLERID-DLPRTFSGGMQQRVQIARALVTNPRLLFLDEPTTGLDVSVQARLLDLIRRLQRELGLSMIVVTHDLGVIRLLA 225
|
250 260 270
....*....|....*....|....*....|....*.
gi 916601733 226 DYIATLYRGGLIEYGPAKELMDYPAHPYTELLMEAV 261
Cdd:COG4107 226 DRTMVMKNGRVVESGLTDQVLEDPQHPYTQLLVSSV 261
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-254 |
5.00e-35 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 131.22 E-value: 5.00e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANDYLLEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsy 80
Cdd:PRK09452 9 SSLSPLVELRGISKSF-------DGK-EVISNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 sDKNGYDPKQfkLDVQPIFQNpYESFsPRKAVdtyLYNTALKLGIAKN-MEEAKQKADEALKSVgmSLAVVQGKYSAQFS 159
Cdd:PRK09452 77 -DITHVPAEN--RHVNTVFQS-YALF-PHMTV---FENVAFGLRMQKTpAAEITPRVMEALRMV--QLEEFAQRKPHQLS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLyRGGLIEY 239
Cdd:PRK09452 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVM-RDGRIEQ 225
|
250
....*....|....*.
gi 916601733 240 -GPAKELMDYPAHPYT 254
Cdd:PRK09452 226 dGTPREIYEEPKNLFV 241
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
7-219 |
9.06e-35 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 126.32 E-value: 9.06e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRIGGmlrgkkmTAVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:COG2884 2 IRFENVSKRYPGGR-------EALSDVSLEIEKGEFVFL--TGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQNpyesFS--PRKAVdtyLYNTALKLGIA-KNMEEAKQKADEALKSVGMSlavvqGK---YSAQFSG 160
Cdd:COG2884 73 EIPYLRRRIGVVFQD----FRllPDRTV---YENVALPLRVTgKSRKEIRRRVREVLDLVGLS-----DKakaLPHELSG 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 161 GELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLS 219
Cdd:COG2884 141 GEQQRVAIARALVNRPELLLADEPTGNLDPETSWEIMELLEEINRR-GTTVLIATHDLE 198
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
8-234 |
1.34e-34 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 123.89 E-value: 1.34e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 8 EVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGrsysdkngyd 87
Cdd:cd00267 1 EIENLSFRY--------GGRTALDNVSLTLKAGE--IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG---------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 88 pkqfkldvQPIFQNPYEsfsprkavdtylyntalklgiaknmeeakqkadEALKSVGmslavvqgkYSAQFSGGELQRVS 167
Cdd:cd00267 61 --------KDIAKLPLE---------------------------------ELRRRIG---------YVPQLSGGQRQRVA 90
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 916601733 168 IARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRG 234
Cdd:cd00267 91 LARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
7-263 |
4.17e-34 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 126.22 E-value: 4.17e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVF-----RIGGMLRGKK-----------MTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDG 70
Cdd:cd03294 1 IKIKGLYKIFgknpqKAFKLLAKGKskeeilkktgqTVGVNDVSLDVREGE--IFVIMGLSGSGKSTLLRCINRLIEPTS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 71 GDIILNGRsysDKNGYDPKQF----KLDVQPIFQNpyesFS--PRKAVdtyLYNTALKLGIA-KNMEEAKQKADEALKSV 143
Cdd:cd03294 79 GKVLIDGQ---DIAAMSRKELrelrRKKISMVFQS----FAllPHRTV---LENVAFGLEVQgVPRAEREERAAEALELV 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 144 GmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYY 223
Cdd:cd03294 149 G--LEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALR 226
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 916601733 224 VSDYIATLYRGGLIEYGPAKELMDYPAHPYTELLMEAVPR 263
Cdd:cd03294 227 LGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFRGVDR 266
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
9-221 |
4.61e-34 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 124.26 E-value: 4.61e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 9 VKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDP 88
Cdd:TIGR03608 1 LKNISKKF--------GDKVILDDLNLTIEKGK--MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 89 KQFKLDVQP-IFQN----PYEsfsprkavdTYLYNTALKL-GIAKNMEEAKQKADEALKSVGMSLAvvQGKYSAQFSGGE 162
Cdd:TIGR03608 71 SKFRREKLGyLFQNfaliENE---------TVEENLDLGLkYKKLSKKEKREKKKEALEKVGLNLK--LKQKIYELSGGE 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTA 221
Cdd:TIGR03608 140 QQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVA 197
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
8-240 |
4.82e-34 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 123.31 E-value: 4.82e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 8 EVKGVSkvFRIGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngYD 87
Cdd:cd03214 1 EVENLS--VGYGGR------TVLDDLSLSIEAGE--IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS---LS 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 88 PKQfkldvqpifqnpyesfsprkavdtylyntalklgIAKNMEEAKQkadeALKSVGMS-LAvvqGKYSAQFSGGELQRV 166
Cdd:cd03214 68 PKE----------------------------------LARKIAYVPQ----ALELLGLAhLA---DRPFNELSGGERQRV 106
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 167 SIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYG 240
Cdd:cd03214 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
3-250 |
5.50e-34 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 125.54 E-value: 5.50e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 3 NDYLLEVKGVSKVFriGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSD 82
Cdd:COG0411 1 SDPLLEVRGLTKRF--GGL------VAVDDVSLEVERGE--IVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KNGYDpkqfkldvqpI--------FQNP--YESFSPRKAV--------DTYLYNTALKL-GIAKNMEEAKQKADEALKSV 143
Cdd:COG0411 71 LPPHR----------IarlgiartFQNPrlFPELTVLENVlvaaharlGRGLLAALLRLpRARREEREARERAEELLERV 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 144 GmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYY 223
Cdd:COG0411 141 G--LADRADEPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMG 218
|
250 260
....*....|....*....|....*..
gi 916601733 224 VSDYIATLYRGGLIEYGPAKELMDYPA 250
Cdd:COG0411 219 LADRIVVLDFGRVIAEGTPAEVRADPR 245
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
6-252 |
2.32e-33 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 123.28 E-value: 2.32e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKPVIlsIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNG 85
Cdd:PRK09493 1 MIEFKNVSKHF--------GPTQVLHNIDLNIDQGEVVV--IIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 yDPKQFKLDVQPIFQNPYeSFSPRKAVDTYLYNTALKLGIAKnmEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQR 165
Cdd:PRK09493 71 -DERLIRQEAGMVFQQFY-LFPHLTALENVMFGPLRVRGASK--EEAEKQARELLAKVG--LAERAHHYPSELSGGQQQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 166 VSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
....*..
gi 916601733 246 MDYPAHP 252
Cdd:PRK09493 224 IKNPPSQ 230
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
8-255 |
5.03e-33 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 124.05 E-value: 5.03e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 8 EVKGVSKVFriggmlrGKKMTAVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN--- 84
Cdd:COG1125 3 EFENVTKRY-------PDGTVAVDDLSLTIPAGEFTVL--VGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDLDpve 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 -----GYdpkqfkldV-QPI--FQNpyesfspRKAVDtylyNTAL--KL-GIAKnmEEAKQKADEALKSVGMSLAVVQGK 153
Cdd:COG1125 74 lrrriGY--------ViQQIglFPH-------MTVAE----NIATvpRLlGWDK--ERIRARVDELLELVGLDPEEYRDR 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 154 YSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDAsmkmnIV-----NLFKELKDKYNISFIYITHDLSTAYYVSDYI 228
Cdd:COG1125 133 YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP-----ITreqlqDELLRLQRELGKTIVFVTHDIDEALKLGDRI 207
|
250 260
....*....|....*....|....*..
gi 916601733 229 ATLYRGGLIEYGPAKELMDYPAHPYTE 255
Cdd:COG1125 208 AVMREGRIVQYDTPEEILANPANDFVA 234
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
6-245 |
1.10e-32 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 121.70 E-value: 1.10e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRiggmlrGKKmTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNG 85
Cdd:COG3638 2 MLELRNLSKRYP------GGT-PALDDVSLEIERGEFV--ALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPKQFKLDVQPIFQNpyesfsprkavdtylYN-----TALK---------LGIAKNM-----EEAKQKADEALKSVGMS 146
Cdd:COG3638 73 RALRRLRRRIGMIFQQ---------------FNlvprlSVLTnvlagrlgrTSTWRSLlglfpPEDRERALEALERVGLA 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 147 lavvqGKYSA---QFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYY 223
Cdd:COG3638 138 -----DKAYQradQLSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARR 212
|
250 260
....*....|....*....|..
gi 916601733 224 VSDYIATLYRGGLIEYGPAKEL 245
Cdd:COG3638 213 YADRIIGLRDGRVVFDGPPAEL 234
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
7-234 |
1.66e-32 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 118.69 E-value: 1.66e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSdkngy 86
Cdd:cd03216 1 LELRGITKRF--GGV------KALDGVSLSVRRGE--VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS----- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 dpkqfkldvqpiFQNPYEsfsprkavdtylyntALKLGIaknmeeakqkadealksvgmslAVVQgkysaQFSGGELQRV 166
Cdd:cd03216 66 ------------FASPRD---------------ARRAGI----------------------AMVY-----QLSVGERQMV 91
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 167 SIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRG 234
Cdd:cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDG 158
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
6-300 |
2.71e-32 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 122.99 E-value: 2.71e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriggMLRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLhTPDggdiilNGRSYSDKNG 85
Cdd:PRK15093 3 LLDIRNLTIEF----KTSDGWVKAVDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGV-TKD------NWRVTADRMR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YD--------PKQ-FKL---DVQPIFQNPYESFSPRKAVDTYLYNT----ALKLGIAKNMEEAKQKADEALKSVGM-SLA 148
Cdd:PRK15093 70 FDdidllrlsPRErRKLvghNVSMIFQEPQSCLDPSERVGRQLMQNipgwTYKGRWWQRFGWRKRRAIELLHRVGIkDHK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 149 VVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYI 228
Cdd:PRK15093 150 DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 229 ATLYRGGLIEYGPAKELMDYPAHPYTELLMEAVPRVGDKwnqefvMPD----------MESKEYALTCCKFAPRCPYATD 298
Cdd:PRK15093 230 NVLYCGQTVETAPSKELVTTPHHPYTQALIRAIPDFGSA------MPHksrlntlpgaIPLLEHLPIGCRLGPRCPYAQR 303
|
..
gi 916601733 299 EC 300
Cdd:PRK15093 304 EC 305
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
7-246 |
6.67e-32 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 120.23 E-value: 6.67e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRiggmlrGKKMTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSD-KNG 85
Cdd:TIGR04520 1 IEVENVSFSYP------ESEKPALKNVSLSIEKGEFV--AIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLDeENL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPKQFkldVQPIFQNPyesfsprkavDTYLYNTALKLGIA---KNM----EEAKQKADEALKSVGMSlavvqgKY---- 154
Cdd:TIGR04520 73 WEIRKK---VGMVFQNP----------DNQFVGATVEDDVAfglENLgvprEEMRKRVDEALKLVGME------DFrdre 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 155 SAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYvSDYIATLYRG 234
Cdd:TIGR04520 134 PHLLSGGQKQRVAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVL-ADRVIVMNKG 212
|
250
....*....|..
gi 916601733 235 GLIEYGPAKELM 246
Cdd:TIGR04520 213 KIVAEGTPREIF 224
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
7-256 |
2.89e-31 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 124.18 E-value: 2.89e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSkvFRIGGMLRgkkmTAVDNVSLKI--GKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKN 84
Cdd:COG2274 474 IELENVS--FRYPGDSP----PVLDNISLTIkpGE----RVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGI---DLR 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 GYDPKQFkldvqpifqnpyesfspRKAV-----DTYLYNtalklG-IAKNMEEAKQKAD-----EALKSVG-----MSLA 148
Cdd:COG2274 541 QIDPASL-----------------RRQIgvvlqDVFLFS-----GtIRENITLGDPDATdeeiiEAARLAGlhdfiEALP 598
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 149 -----VVqGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELkdKYNISFIYITHDLSTAYY 223
Cdd:COG2274 599 mgydtVV-GEGGSNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRL--LKGRTVIIIAHRLSTIRL 675
|
250 260 270
....*....|....*....|....*....|...
gi 916601733 224 VsDYIATLYRGGLIEYGPAKELMDYPAHpYTEL 256
Cdd:COG2274 676 A-DRIIVLDKGRIVEDGTHEELLARKGL-YAEL 706
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-255 |
3.44e-31 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 117.83 E-value: 3.44e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 2 ANDYLLEVKGVSkvFRIGGmlrgKKmtAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLH--TPDG---GDIILN 76
Cdd:COG1117 7 TLEPKIEVRNLN--VYYGD----KQ--ALKDINLDIPENK--VTALIGPSGCGKSTLLRCLNRMNdlIPGArveGEILLD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 77 GRSYSDKnGYDPKQFKLDVQPIFQNP-------YEsfsprkavdtylyNTA--LKL-GIaKNMEEAKQKADEALKSV--- 143
Cdd:COG1117 77 GEDIYDP-DVDVVELRRRVGMVFQKPnpfpksiYD-------------NVAygLRLhGI-KSKSELDEIVEESLRKAalw 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 144 ----------GMSLavvqgkysaqfSGGELQRVSIARALITRPKLIIADEPVAAID--ASMKmnIVNLFKELKDKYNIsf 211
Cdd:COG1117 142 devkdrlkksALGL-----------SGGQQQRLCIARALAVEPEVLLMDEPTSALDpiSTAK--IEELILELKKDYTI-- 206
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 916601733 212 IYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHPYTE 255
Cdd:COG1117 207 VIVTHNMQQAARVSDYTAFFYLGELVEFGPTEQIFTNPKDKRTE 250
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
30-255 |
3.46e-31 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 118.02 E-value: 3.46e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIGKDkpVILSIVGESGCGKSTLCKMILKL--HTPDG---GDIILNGRS-YSDKngYDPKQFKLDVQPIFQ--N 101
Cdd:PRK14267 20 IKGVDLKIPQN--GVFALMGPSGCGKSTLLRTFNRLleLNEEArveGEVRLFGRNiYSPD--VDPIEVRREVGMVFQypN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 102 PYESFsprkavdTYLYNTALKL---GIAKNMEEAKQKADEALKSVGMSLAVVQ--GKYSAQFSGGELQRVSIARALITRP 176
Cdd:PRK14267 96 PFPHL-------TIYDNVAIGVklnGLVKSKKELDERVEWALKKAALWDEVKDrlNDYPSNLSGGQRQRLVIARALAMKP 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 177 KLIIADEPVAAIDASMKMNIVNLFKELKDKYNIsfIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHPYTE 255
Cdd:PRK14267 169 KILLMDEPTANIDPVGTAKIEELLFELKKEYTI--VLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTE 245
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
6-261 |
4.04e-31 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 117.62 E-value: 4.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriGGmlrGKKMTAVdNVSLKIGKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNG 85
Cdd:TIGR02323 3 LLQVSGLSKSY--GG---GKGCRDV-SFDLYPGE----VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELEL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 Y---DPKQFKL---DVQPIFQNPYESFSPRKAVDTYLYNTALKLGiAKNMEEAKQKADEALKSVGMSLAVVQGKySAQFS 159
Cdd:TIGR02323 73 YqlsEAERRRLmrtEWGFVHQNPRDGLRMRVSAGANIGERLMAIG-ARHYGNIRATAQDWLEEVEIDPTRIDDL-PRAFS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEY 239
Cdd:TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230
|
250 260
....*....|....*....|..
gi 916601733 240 GPAKELMDYPAHPYTELLMEAV 261
Cdd:TIGR02323 231 GLTDQVLDDPQHPYTQLLVSSI 252
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-245 |
4.85e-31 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 122.05 E-value: 4.85e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 3 NDYLLEVKGVSKVFriGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSD 82
Cdd:COG1129 1 AEPLLEMRGISKSF--GGV------KALDGVSLELRPGE--VHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRF 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KNgydPKQ-FKLDVQPIFQNPyesfsprkavdtylyNTALKLGIAKNM--------------EEAKQKADEALKSVGMSL 147
Cdd:COG1129 71 RS---PRDaQAAGIAIIHQEL---------------NLVPNLSVAENIflgreprrgglidwRAMRRRARELLARLGLDI 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 148 ---AVVqgkysAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASmkmNIVNLFK---ELKDKyNISFIYITHDLSTA 221
Cdd:COG1129 133 dpdTPV-----GDLSVAQQQLVEIARALSRDARVLILDEPTASLTER---EVERLFRiirRLKAQ-GVAIIYISHRLDEV 203
|
250 260
....*....|....*....|....
gi 916601733 222 YYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:COG1129 204 FEIADRVTVLRDGRLVGTGPVAEL 227
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
7-259 |
2.39e-30 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 115.62 E-value: 2.39e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRIGGMLRGkkmtavdnVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGG-----DIILNG-RSY 80
Cdd:PRK11264 4 IEVKNLVKKFHGQTVLHG--------IDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLEQPEAGtirvgDITIDTaRSL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 SDKNGYdPKQFKLDVQPIFQNpYESFSPRKAVDTYLYNTALKLGIAKnmEEAKQKADEALKSVGMSlavvqGK---YSAQ 157
Cdd:PRK11264 74 SQQKGL-IRQLRQHVGFVFQN-FNLFPHRTVLENIIEGPVIVKGEPK--EEATARARELLAKVGLA-----GKetsYPRR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 158 FSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLI 237
Cdd:PRK11264 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIV 223
|
250 260
....*....|....*....|..
gi 916601733 238 EYGPAKELMDYPAHPYTELLME 259
Cdd:PRK11264 224 EQGPAKALFADPQQPRTRQFLE 245
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
30-255 |
2.57e-30 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 115.40 E-value: 2.57e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIGKDkpVILSIVGESGCGKSTLCKMILKLHT--PDG---GDIILNGRSYsdkngydpkqFKLD-------VQP 97
Cdd:PRK14247 19 LDGVNLEIPDN--TITALMGPSGSGKSTLLRVFNRLIElyPEArvsGEVYLDGQDI----------FKMDvielrrrVQM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 98 IFQ--NPYESFSprkavdtYLYNTALKLG---IAKNMEEAKQKADEALKSVGMSLAVVQ--GKYSAQFSGGELQRVSIAR 170
Cdd:PRK14247 87 VFQipNPIPNLS-------IFENVALGLKlnrLVKSKKELQERVRWALEKAQLWDEVKDrlDAPAGKLSGGQQQRLCIAR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 171 ALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNIsfIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPA 250
Cdd:PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTI--VLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPR 237
|
....*
gi 916601733 251 HPYTE 255
Cdd:PRK14247 238 HELTE 242
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
44-252 |
9.68e-30 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 114.30 E-value: 9.68e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYS---DKNG----YDPKQFKL---DVQPIFQNpYESFSPRKAVD 113
Cdd:PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrDKDGqlkvADKNQLRLlrtRLTMVFQH-FNLWSHMTVLE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 114 TYLYNTALKLGIAKnmEEAKQKADEALKSVGMSLAVvQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMK 193
Cdd:PRK10619 112 NVMEAPIQVLGLSK--QEARERAVKYLAKVGIDERA-QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 194 MNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHP 252
Cdd:PRK10619 189 GEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSP 246
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
7-240 |
1.56e-29 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 112.29 E-value: 1.56e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrGKKMtAVDNVSLKIGkdkPVILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN-- 84
Cdd:cd03264 1 LQLENLTKRY-------GKKR-ALDGVSLTLG---PGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPqk 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 -----GYDPKQFkldvqpifqNPYESFSPRKAVDtylYNTALKlGIAKnmEEAKQKADEALKSVGmsLAVVQGKYSAQFS 159
Cdd:cd03264 70 lrrriGYLPQEF---------GVYPNFTVREFLD---YIAWLK-GIPS--KEVKARVDEVLELVN--LGDRAKKKIGSLS 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKEL-KDKyniSFIYITHDLSTAYYVSDYIATLYRGGLIE 238
Cdd:cd03264 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELgEDR---IVILSTHIVEDVESLCNQVAVLNKGKLVF 209
|
..
gi 916601733 239 YG 240
Cdd:cd03264 210 EG 211
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
47-253 |
1.93e-29 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 114.90 E-value: 1.93e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 47 IVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYdpkqfKLDVQPIFQNpYESFsPRKAVDTylyNTALKLGIA 126
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-----LRHINMVFQS-YALF-PHMTVEE---NVAFGLKMR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 127 K-NMEEAKQKADEALKSVgmSLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKD 205
Cdd:TIGR01187 71 KvPRAEIKPRVLEALRLV--QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 916601733 206 KYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHPY 253
Cdd:TIGR01187 149 QLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
3-221 |
2.81e-29 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 112.22 E-value: 2.81e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 3 NDYLLEVKGVSKVFRiggmlRGKKMTAV-DNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSY- 80
Cdd:PRK11629 2 NKILLQCDNLCKRYQ-----EGSVQTDVlHNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMs 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 --SDKNGYDPKQFKLDVQPIFQNPYESFsprkavdTYLYNTALKLGIA-KNMEEAKQKADEALKSVGmsLAVVQGKYSAQ 157
Cdd:PRK11629 75 klSSAAKAELRNQKLGFIYQFHHLLPDF-------TALENVAMPLLIGkKKPAEINSRALEMLAAVG--LEHRANHRPSE 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 158 FSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTA 221
Cdd:PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA 209
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-247 |
2.88e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 113.31 E-value: 2.88e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANDYLLEVKGVSkvFRiggmLRGKKMTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSY 80
Cdd:PRK13648 2 EDKNSIIVFKNVS--FQ----YQSDASFTLKDVSFNIPKGQWT--SIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 SDKNGYDPKQfklDVQPIFQNPYESFsprkAVDTYLYNTALklGIAKNM---EEAKQKADEALKSVGMslaVVQGKYSAQ 157
Cdd:PRK13648 74 TDDNFEKLRK---HIGIVFQNPDNQF----VGSIVKYDVAF--GLENHAvpyDEMHRRVSEALKQVDM---LERADYEPN 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 158 -FSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYvSDYIATLYRGGL 236
Cdd:PRK13648 142 aLSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTV 220
|
250
....*....|.
gi 916601733 237 IEYGPAKELMD 247
Cdd:PRK13648 221 YKEGTPTEIFD 231
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
30-249 |
2.93e-29 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 112.17 E-value: 2.93e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNgydPkqfklDVQPIFQNpYeSFSPR 109
Cdd:TIGR01184 1 LKGVNLTIQQGE--FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG---P-----DRMVVFQN-Y-SLLPW 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 110 KAVDTylyNTALKLGIAK---NMEEAKQKADEALKSVGMSLAvvQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVA 186
Cdd:TIGR01184 69 LTVRE---NIALAVDRVLpdlSKSERRAIVEEHIALVGLTEA--ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFG 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 916601733 187 AIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGpakELMDYP 249
Cdd:TIGR01184 144 ALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG---QILEVP 203
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
7-221 |
3.16e-29 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 110.17 E-value: 3.16e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSkvFRIGGMLRgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGrsysdkngy 86
Cdd:cd03228 1 IEFKNVS--FSYPGRPK----PVLKDVSLTIKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG--------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 dpkqfkldvQPIFQNPYESFspRKAV-----DTYLYNTAlklgIAKNMeeakqkadealksvgmslavvqgkysaqFSGG 161
Cdd:cd03228 64 ---------VDLRDLDLESL--RKNIayvpqDPFLFSGT----IRENI----------------------------LSGG 100
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 162 ELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDkyNISFIYITHDLSTA 221
Cdd:cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTI 158
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
7-236 |
6.63e-29 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 110.68 E-value: 6.63e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSkvFRIGGMLRgkkmtaVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngY 86
Cdd:COG4619 1 LELEGLS--FRVGGKPI------LSPVSLTLEAGE--CVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSA---M 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQNP-------YESFSprkavDTYLYntalklgiaKNMEEAKQKADEALKSVGMSLAVVQGKYSaQFS 159
Cdd:COG4619 68 PPPEWRRQVAYVPQEPalwggtvRDNLP-----FPFQL---------RERKFDRERALELLERLGLPPDILDKPVE-RLS 132
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGL 236
Cdd:COG4619 133 GGERQRLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
6-254 |
1.17e-28 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 113.78 E-value: 1.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNG 85
Cdd:PRK11607 19 LLEIRNLTKSF--------DGQHAVDDVSLTIYKGE--IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDpkqfkldvQPI---FQNpYESFsPRKAVDTylyntalklGIAKNMEEAKQKADEALKSVGMSLAVVQGKYSA-----Q 157
Cdd:PRK11607 89 YQ--------RPInmmFQS-YALF-PHMTVEQ---------NIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAkrkphQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 158 FSGGELQRVSIARALITRPKLIIADEPVAAIDAS----MKMNIVNLFkelkDKYNISFIYITHDLSTAYYVSDYIATLYR 233
Cdd:PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKlrdrMQLEVVDIL----ERVGVTCVMVTHDQEEAMTMAGRIAIMNR 225
|
250 260
....*....|....*....|.
gi 916601733 234 GGLIEYGPAKELMDYPAHPYT 254
Cdd:PRK11607 226 GKFVQIGEPEEIYEHPTTRYS 246
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
7-245 |
1.88e-28 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 109.52 E-value: 1.88e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRiggmlrGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRS-YSDKN- 84
Cdd:cd03263 1 LQIRNLTKTYK------KGTKPAVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSiRTDRKa 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 -----GYDPkQFklDVQpifqnpYESFSPRKAVdtYLYnTALKlGIAKnmEEAKQKADEALKSVGmsLAVVQGKYSAQFS 159
Cdd:cd03263 73 arqslGYCP-QF--DAL------FDELTVREHL--RFY-ARLK-GLPK--SEIKEEVELLLRVLG--LTDKANKRARTLS 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDkyNISFIYITHDLSTAYYVSDYIATLYRGGLIEY 239
Cdd:cd03263 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213
|
....*.
gi 916601733 240 GPAKEL 245
Cdd:cd03263 214 GSPQEL 219
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
27-235 |
4.53e-28 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 108.49 E-value: 4.53e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 27 MTAVDNVSLKIGKDKPVILSivGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFKLDVQPIFQNpYESF 106
Cdd:TIGR02673 15 VAALHDVSLHIRKGEFLFLT--GPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQD-FRLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 107 SPRKAVDtylyNTALKLGIA-KNMEEAKQKADEALKSVGMSLAVVQgkYSAQFSGGELQRVSIARALITRPKLIIADEPV 185
Cdd:TIGR02673 92 PDRTVYE----NVALPLEVRgKKEREIQRRVGAALRQVGLEHKADA--FPEQLSGGEQQRVAIARAIVNSPPLLLADEPT 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 916601733 186 AAIDASMKMNIVNLFKELkDKYNISFIYITHDLSTAYYVSDYIATLYRGG 235
Cdd:TIGR02673 166 GNLDPDLSERILDLLKRL-NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
30-260 |
5.87e-28 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 109.40 E-value: 5.87e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLhTPDG-----GDIILNGRSYSdkngydPKQFK-LDVQPIFQNPY 103
Cdd:PRK10418 19 VHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALGI-LPAGvrqtaGRVLLDGKPVA------PCALRgRKIATIMQNPR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 104 ESFSPRKAVDTYLYNTALKLGIAKNmeeaKQKADEALKSVGMS-LAVVQGKYSAQFSGGELQRVSIARALITRPKLIIAD 182
Cdd:PRK10418 90 SAFNPLHTMHTHARETCLALGKPAD----DATLTAALEAVGLEnAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 183 EPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHPYTELLMEA 260
Cdd:PRK10418 166 EPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVSA 243
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
7-257 |
9.12e-28 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 113.32 E-value: 9.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSkvFRIGGMLRgkkmTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngY 86
Cdd:COG4987 334 LELEDVS--FRYPGAGR----PVLDGLSLTLPPGERV--AIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRD---L 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFkldvqpifqnpyesfspRKAV-----DTYLYNTAlklgIAKNMEEAKQKADE-----ALKSVGMS---------L 147
Cdd:COG4987 403 DEDDL-----------------RRRIavvpqRPHLFDTT----LRENLRLARPDATDeelwaALERVGLGdwlaalpdgL 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 148 AVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVN-LFKELKDKyniSFIYITHDLSTAYYVsD 226
Cdd:COG4987 462 DTWLGEGGRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLAdLLEALAGR---TVLLITHRLAGLERM-D 537
|
250 260 270
....*....|....*....|....*....|.
gi 916601733 227 YIATLYRGGLIEYGPAKELMDYPAHpYTELL 257
Cdd:COG4987 538 RILVLEDGRIVEQGTHEELLAQNGR-YRQLY 567
|
|
| heterocyst_DevA |
TIGR02982 |
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly ... |
7-217 |
9.16e-28 |
|
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Pssm-ID: 274374 [Multi-domain] Cd Length: 220 Bit Score: 107.80 E-value: 9.16e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRIGGMlrgkKMTAVDNVSLKIGKDKPVILSivGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:TIGR02982 2 ISIRNLNHYYGHGSL----RKQVLFDINLEINPGEIVILT--GPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELHGASKK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQ--NPYESFSPRKAVdtylyNTALKLGIAKNMEEAKQKADEALKSVGMSLAVvqGKYSAQFSGGELQ 164
Cdd:TIGR02982 76 QLVQLRRRIGYIFQahNLLGFLTARQNV-----QMALELQPNLSYQEARERARAMLEAVGLGDHL--NYYPHNLSGGQKQ 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 916601733 165 RVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHD 217
Cdd:TIGR02982 149 RVAIARALVHHPKLVLADEPTAALDSKSGRDVVELMQKLAKEQGCTILMVTHD 201
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
44-253 |
1.43e-27 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 110.59 E-value: 1.43e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNgydpkqfkldvQPIFQNPYesfspRKAVdTYLYNTAL-- 121
Cdd:TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSR-----------KGIFLPPE-----KRRI-GYVFQEARlf 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 122 -KLGIAKNMEEAKQKADEALKSVGMSlAVVQ--------GKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASM 192
Cdd:TIGR02142 88 pHLSVRGNLRYGMKRARPSERRISFE-RVIEllgighllGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 193 KMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHPY 253
Cdd:TIGR02142 167 KYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
45-218 |
1.61e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 108.67 E-value: 1.61e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 45 LSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQfklDVQPIFQNPYESFSPRKAVDTYLYNTALKlG 124
Cdd:PRK13650 36 LSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRH---KIGMVFQNPDNQFVGATVEDDVAFGLENK-G 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 125 IAknMEEAKQKADEALKSVGMSlaVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELK 204
Cdd:PRK13650 112 IP--HEEMKERVNEALELVGMQ--DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIR 187
|
170
....*....|....
gi 916601733 205 DKYNISFIYITHDL 218
Cdd:PRK13650 188 DDYQMTVISITHDL 201
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
29-255 |
1.68e-27 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 107.79 E-value: 1.68e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFKL---DVQPIFQNpYES 105
Cdd:COG4161 17 ALFDINLECPSGETLVL--LGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFDFSQKPSEKAIRLlrqKVGMVFQQ-YNL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 106 FsPRKAVDTYLYNTALK-LGIAKnmEEAKQKADEALKSvgMSLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEP 184
Cdd:COG4161 94 W-PHLTVMENLIEAPCKvLGLSK--EQAREKAMKLLAR--LRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 185 VAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELmdypAHPYTE 255
Cdd:COG4161 169 TAALDPEITAQVVEIIRELSQT-GITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDASHF----TQPQTE 234
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
29-255 |
3.03e-27 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 107.56 E-value: 3.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHtpdggDIILNGRS-----YSDKNGY----DPKQFKLDVQPIF 99
Cdd:PRK14243 25 AVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLN-----DLIPGFRVegkvtFHGKNLYapdvDPVEVRRRIGMVF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 100 QNPYeSFsPRKAVDTYLYNTALkLGIAKNMEEAKQKA-------DEA---LKSVGMSLavvqgkysaqfSGGELQRVSIA 169
Cdd:PRK14243 98 QKPN-PF-PKSIYDNIAYGARI-NGYKGDMDELVERSlrqaalwDEVkdkLKQSGLSL-----------SGGQQQRLCIA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 170 RALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNIsfIYITHDLSTAYYVSDYIA-----TLYRGG----LIEYG 240
Cdd:PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTI--IIVTHNMQQAARVSDMTAffnveLTEGGGrygyLVEFD 241
|
250
....*....|....*
gi 916601733 241 PAKELMDYPAHPYTE 255
Cdd:PRK14243 242 RTEKIFNSPQQQATR 256
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
6-261 |
4.39e-27 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 106.93 E-value: 4.39e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFrigGMLRGkkmtaVDNVSLKI--GKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDK 83
Cdd:PRK11701 6 LLSVRGLTKLY---GPRKG-----CRDVSFDLypGE----VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 84 NGYDPKQ------FKLDVQPIFQNPYESFspRKAVdtylynTA--------LKLGiAKNMEEAKQKADEALKSVGMSLAV 149
Cdd:PRK11701 74 DLYALSEaerrrlLRTEWGFVHQHPRDGL--RMQV------SAggnigerlMAVG-ARHYGDIRATAGDWLERVEIDAAR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 150 VQGKYSAqFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIA 229
Cdd:PRK11701 145 IDDLPTT-FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLL 223
|
250 260 270
....*....|....*....|....*....|..
gi 916601733 230 TLYRGGLIEYGPAKELMDYPAHPYTELLMEAV 261
Cdd:PRK11701 224 VMKQGRVVESGLTDQVLDDPQHPYTQLLVSSV 255
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
6-221 |
4.85e-27 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 106.36 E-value: 4.85e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIG-GMLrgkkmTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCkMILK-LHTPDGGDIILNGRSYsdk 83
Cdd:COG4181 8 IIELRGLTKTVGTGaGEL-----TILKGISLEVEAGESV--AIVGASGSGKSTLL-GLLAgLDRPTSGTVRLAGQDL--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 84 ngydpkqFKLD-----------VQPIFQnpyeSFS--PRKavdTYLYNTALKLGIAkNMEEAKQKADEALKSVGmsLAVV 150
Cdd:COG4181 77 -------FALDedararlrarhVGFVFQ----SFQllPTL---TALENVMLPLELA-GRRDARARARALLERVG--LGHR 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 151 QGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTA 221
Cdd:COG4181 140 LDHYPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALA 210
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
24-245 |
1.02e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 106.71 E-value: 1.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 24 GKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSD-KNGYDPKQfklDVQPIFQNP 102
Cdd:PRK13633 20 STEKLALDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDeENLWDIRN---KAGMVFQNP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 103 yesfsprkavDTYLYNTALK---------LGIAKnmEEAKQKADEALKSVGMSlavvqgKYSAQ----FSGGELQRVSIA 169
Cdd:PRK13633 95 ----------DNQIVATIVEedvafgpenLGIPP--EEIRERVDESLKKVGMY------EYRRHaphlLSGGQKQRVAIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 170 RALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYvSDYIATLYRGGLIEYGPAKEL 245
Cdd:PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
44-252 |
1.05e-26 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 105.22 E-value: 1.05e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYD-PkqfkldVQPIFQnpyesfsprkavDTYLYN--TA 120
Cdd:COG3840 27 RVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAErP------VSMLFQ------------ENNLFPhlTV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 121 LK---LGIAKNM---EEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKM 194
Cdd:COG3840 89 AQnigLGLRPGLkltAEQRAQVEQALERVG--LAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQ 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 195 NIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHP 252
Cdd:COG3840 167 EMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPP 224
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
28-217 |
1.55e-26 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 104.41 E-value: 1.55e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 28 TAVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFKLDVQPIFQNpYESFS 107
Cdd:cd03292 15 AALDGINISISAGEFVFL--VGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQD-FRLLP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 108 PRKAVDtylyNTALKLGIA-KNMEEAKQKADEALKSVGMSlavvqGK---YSAQFSGGELQRVSIARALITRPKLIIADE 183
Cdd:cd03292 92 DRNVYE----NVAFALEVTgVPPREIRKRVPAALELVGLS-----HKhraLPAELSGGEQQRVAIARAIVNSPTILIADE 162
|
170 180 190
....*....|....*....|....*....|....
gi 916601733 184 PVAAIDASMKMNIVNLFKELkDKYNISFIYITHD 217
Cdd:cd03292 163 PTGNLDPDTTWEIMNLLKKI-NKAGTTVVVATHA 195
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
7-221 |
2.92e-26 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 104.94 E-value: 2.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriGGmlRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysdkngy 86
Cdd:COG4525 4 LTVRHVSVRY--PG--GGQPQPALQDVSLTIESGE--FVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGV-------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 dpkqfkldvqPI----------FQNpyESFSP-RKAVDtylyNTALKL---GIAKnmEEAKQKADEALKSVGmsLAVVQG 152
Cdd:COG4525 70 ----------PVtgpgadrgvvFQK--DALLPwLNVLD----NVAFGLrlrGVPK--AERRARAEELLALVG--LADFAR 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 153 KYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTA 221
Cdd:COG4525 130 RRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEA 198
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
28-246 |
6.07e-26 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 108.31 E-value: 6.07e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 28 TAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngYDPKQFKLDVQPIFQNPYesfs 107
Cdd:COG4988 351 PALDGLSLTIPPGE--RVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSD---LDPASWRRQIAWVPQNPY---- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 108 prkavdtyLYNTAlklgIAKNMEEAKQKADE-----ALKSVGMsLAVVQ----------GKYSAQFSGGELQRVSIARAL 172
Cdd:COG4988 422 --------LFAGT----IRENLRLGRPDASDeeleaALEAAGL-DEFVAalpdgldtplGEGGRGLSGGQAQRLALARAL 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 173 ITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNIsfIYITHDLSTAYYvSDYIATLYRGGLIEYGPAKELM 246
Cdd:COG4988 489 LRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTV--ILITHRLALLAQ-ADRILVLDDGRIVEQGTHEELL 559
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
31-247 |
9.69e-26 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 102.69 E-value: 9.69e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 31 DNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysdkngyDPKQFKLDvqpifqnpyesfSPRK 110
Cdd:cd03253 18 KDVSFTIPAGKKV--AIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQ--------DIREVTLD------------SLRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 111 AV-----DTYLYNTALKLGIA--------KNMEEAKQKADEALKSVGMS--LAVVQGKYSAQFSGGELQRVSIARALITR 175
Cdd:cd03253 76 AIgvvpqDTVLFNDTIGYNIRygrpdatdEEVIEAAKAAQIHDKIMRFPdgYDTIVGERGLKLSGGEKQRVAIARAILKN 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 916601733 176 PKLIIADEPVAAIDASMKMNIVNLFKELKDkyNISFIYITHDLSTAYYvSDYIATLYRGGLIEYGPAKELMD 247
Cdd:cd03253 156 PPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
7-240 |
1.04e-25 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 101.91 E-value: 1.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYsDKNGY 86
Cdd:cd03268 1 LKTNDLTKTY--------GKKRVLDDISLHVKKGE--IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY-QKNIE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFK--LDVqPIFqnpYESFSPRKAvdtyLYNTALKLGIAKNmeeakqKADEALKSVGmsLAVVQGKYSAQFSGGELQ 164
Cdd:cd03268 70 ALRRIGalIEA-PGF---YPNLTAREN----LRLLARLLGIRKK------RIDEVLDVVG--LKDSAKKKVKGFSLGMKQ 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 165 RVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDkYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYG 240
Cdd:cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
29-265 |
1.51e-25 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 103.56 E-value: 1.51e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQfklDVQPIFQNPYESFSP 108
Cdd:PRK13635 22 ALKDVSFSVYEGE--WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRR---QVGMVFQNPDNQFVG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 109 RKAVDtylyNTALKL---GIAKnmEEAKQKADEALKSVGMSLAVVQgkYSAQFSGGELQRVSIARALITRPKLIIADEPV 185
Cdd:PRK13635 97 ATVQD----DVAFGLeniGVPR--EEMVERVDQALRQVGMEDFLNR--EPHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 186 AAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYvSDYIATLYRGGLIEYGPAKELMDYPAH--------PYTELL 257
Cdd:PRK13635 169 SMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFKSGHMlqeigldvPFSVKL 247
|
....*...
gi 916601733 258 MEAVPRVG 265
Cdd:PRK13635 248 KELLKRNG 255
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
29-255 |
1.56e-25 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 102.40 E-value: 1.56e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFKL---DVQPIFQNpYES 105
Cdd:PRK11124 17 ALFDITLDCPQGETLVL--LGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRElrrNVGMVFQQ-YNL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 106 FsPRKAVDTYLYNTALK-LGIAKnmEEAKQKADEALKSvgMSLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEP 184
Cdd:PRK11124 94 W-PHLTVQQNLIEAPCRvLGLSK--DQALARAEKLLER--LRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 185 VAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAkelmDYPAHPYTE 255
Cdd:PRK11124 169 TAALDPEITAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA----SCFTQPQTE 234
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
7-240 |
1.80e-25 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 102.83 E-value: 1.80e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDiILNGRSysdkngy 86
Cdd:PRK11247 13 LLLNAVSKRY-------GER-TVLNQLDLHIPAGQFV--AVVGRSGCGKSTLLRLLAGLETPSAGE-LLAGTA------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 dP-KQFKLDVQPIFQN----PYesfspRKAVDtylyNTALKLGiaknmEEAKQKADEALKSVGmsLAVVQGKYSAQFSGG 161
Cdd:PRK11247 75 -PlAEAREDTRLMFQDarllPW-----KKVID----NVGLGLK-----GQWRDAALQALAAVG--LADRANEWPAALSGG 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 162 ELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDyiatlyRGGLIEYG 240
Cdd:PRK11247 138 QKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMAD------RVLLIEEG 210
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
32-255 |
1.82e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 102.82 E-value: 1.82e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRS-YSDKNGY--DPKQFKLDVQPIFQNPyESFSP 108
Cdd:PRK14246 28 DITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVlYFGKDIFqiDAIKLRKEVGMVFQQP-NPFPH 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 109 RKAVDTYLYntALKLGIAKNMEEAKQKADEALKSVGMSLAVVQ--GKYSAQFSGGELQRVSIARALITRPKLIIADEPVA 186
Cdd:PRK14246 105 LSIYDNIAY--PLKSHGIKEKREIKKIVEECLRKVGLWKEVYDrlNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 187 AIDASMKMNIVNLFKELKDKynISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHPYTE 255
Cdd:PRK14246 183 MIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
7-245 |
2.27e-25 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 101.68 E-value: 2.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngy 86
Cdd:cd03265 1 IEVENLVKKY--GDF------EAVRGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR---- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQNPyesfsprkAVDTYLY---NTALKLGIA--KNmEEAKQKADEALKsvGMSLAVVQGKYSAQFSGG 161
Cdd:cd03265 67 EPREVRRRIGIVFQDL--------SVDDELTgweNLYIHARLYgvPG-AERRERIDELLD--FVGLLEAADRLVKTYSGG 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 162 ELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGP 241
Cdd:cd03265 136 MRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215
|
....
gi 916601733 242 AKEL 245
Cdd:cd03265 216 PEEL 219
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
26-255 |
4.72e-25 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 101.39 E-value: 4.72e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 26 KMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLhtpdgGDII----LNGR-SYSDKNGYDPK----QFKLDVQ 96
Cdd:PRK14239 17 KKKALNSVSLDFYPNE--ITALIGPSGSGKSTLLRSINRM-----NDLNpevtITGSiVYNGHNIYSPRtdtvDLRKEIG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 97 PIFQ--NPYesfsPRKAVDTYLYntalklGIAKNMEEAKQKADEALKSVGMSLAV---VQGKYSAQ---FSGGELQRVSI 168
Cdd:PRK14239 90 MVFQqpNPF----PMSIYENVVY------GLRLKGIKDKQVLDEAVEKSLKGASIwdeVKDRLHDSalgLSGGQQQRVCI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 169 ARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNIsfIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDY 248
Cdd:PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTM--LLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237
|
....*..
gi 916601733 249 PAHPYTE 255
Cdd:PRK14239 238 PKHKETE 244
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
7-246 |
7.32e-25 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 105.25 E-value: 7.32e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSkvFRIGGmlrGKKmtAVDNVSLKI--GKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkn 84
Cdd:COG1132 340 IEFENVS--FSYPG---DRP--VLKDISLTIppGE----TVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRD-- 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 gYDPKQFkldvqpifqnpyesfspRKAV-----DTYLYN-TalklgIAKNMEEAKQKAD-----EALKSVG-----MSL- 147
Cdd:COG1132 407 -LTLESL-----------------RRQIgvvpqDTFLFSgT-----IRENIRYGRPDATdeeveEAAKAAQahefiEALp 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 148 ----AVVqGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIV-NLFKELKDKynISFIyITHDLST-- 220
Cdd:COG1132 464 dgydTVV-GERGVNLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQeALERLMKGR--TTIV-IAHRLSTir 539
|
250 260
....*....|....*....|....*..
gi 916601733 221 -AyyvsDYIATLYRGGLIEYGPAKELM 246
Cdd:COG1132 540 nA----DRILVLDDGRIVEQGTHEELL 562
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
32-247 |
1.66e-24 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 99.22 E-value: 1.66e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKDKPVI------------LSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngYDPKQFKLDVQPIF 99
Cdd:cd03254 7 NVNFSYDEKKPVLkdinfsikpgetVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRD---ISRKSLRSMIGVVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 100 QnpyesfsprkavDTYLYNTALKLGIAKNMEEAKQK-ADEALKSVGMS---------LAVVQGKYSAQFSGGELQRVSIA 169
Cdd:cd03254 84 Q------------DTFLFSGTIMENIRLGRPNATDEeVIEAAKEAGAHdfimklpngYDTVLGENGGNLSQGERQLLAIA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 170 RALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDkyNISFIYITHDLSTAYYvSDYIATLYRGGLIEYGPAKELMD 247
Cdd:cd03254 152 RAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLA 226
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
23-247 |
1.77e-24 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 99.48 E-value: 1.77e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 23 RGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGrsySDKNGYDPKQFKLDVQPIFQnp 102
Cdd:cd03252 11 KPDGPVILDNISLRIKPGE--VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDG---HDLALADPAWLRRQVGVVLQ-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 103 yesfsprkavDTYLYNTALKLGIA--------KNMEEAKQKAD--EALKSVGMSLAVVQGKYSAQFSGGELQRVSIARAL 172
Cdd:cd03252 84 ----------ENVLFNRSIRDNIAladpgmsmERVIEAAKLAGahDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 173 ITRPKLIIADEPVAAIDASMKMNIVNLFKELKDkyNISFIYITHDLSTAyYVSDYIATLYRGGLIEYGPAKELMD 247
Cdd:cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTV-KNADRIIVMEKGRIVEQGSHDELLA 225
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
3-246 |
1.83e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 100.45 E-value: 1.83e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 3 NDYLLEVKGVSkvFRIGGMlrgkKMTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSD 82
Cdd:PRK13632 4 KSVMIKVENVS--FSYPNS----ENNALKNVSFEINEGEYV--AILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KNgydPKQFKLDVQPIFQNPYESFSPRKAVDTY---LYNTALklgiakNMEEAKQKADEALKSVGMSLAVvqgKYSAQF- 158
Cdd:PRK13632 76 EN---LKEIRKKIGIIFQNPDNQFIGATVEDDIafgLENKKV------PPKKMKDIIDDLAKKVGMEDYL---DKEPQNl 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 159 SGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAyYVSDYIATLYRGGLIE 238
Cdd:PRK13632 144 SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIA 222
|
....*...
gi 916601733 239 YGPAKELM 246
Cdd:PRK13632 223 QGKPKEIL 230
|
|
| CP_lyasePhnL |
TIGR02324 |
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P ... |
6-231 |
8.63e-24 |
|
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Pssm-ID: 131377 [Multi-domain] Cd Length: 224 Bit Score: 97.46 E-value: 8.63e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFrIGGMLRGKKMTAVDNVSLKIGKDKPVILSivGESGCGKSTLCKMILKLHTPDGGDI-ILNGRSYSDKN 84
Cdd:TIGR02324 1 LLEVEDLSKTF-TLHQQGGVRLPVLKNVSLTVNAGECVALS--GPSGAGKSTLLKSLYANYLPDSGRIlVRHEGAWVDLA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 GYDPKQF----KLDVQPIFQnpYESFSPRKAVDTYLYNTALKLGIAKnmEEAKQKADEALKSVGMSLAVVQgKYSAQFSG 160
Cdd:TIGR02324 78 QASPREVlevrRKTIGYVSQ--FLRVIPRVSALEVVAEPLLERGVPR--EAARARARELLARLNIPERLWH-LPPATFSG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 161 GELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATL 231
Cdd:TIGR02324 153 GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVMDV 222
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
29-244 |
1.00e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 98.58 E-value: 1.00e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIgKDKPVIlSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNgYDPKQFKLDVQPIFQNP-YESFS 107
Cdd:PRK13637 22 ALDNVNIEI-EDGEFV-GLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK-VKLSDIRKKVGLVFQYPeYQLFE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 108 prkavDTYLYNTAL---KLGIAKnmEEAKQKADEALKSVGMSLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEP 184
Cdd:PRK13637 99 -----ETIEKDIAFgpiNLGLSE--EEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEP 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 185 VAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKE 244
Cdd:PRK13637 172 TAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
44-246 |
2.12e-23 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 99.02 E-value: 2.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKngydpkQFKLDVQP-------IFQNPyeSFSPRkavdtyl 116
Cdd:COG4148 27 VTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDS------ARGIFLPPhrrrigyVFQEA--RLFPH------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 117 yntalkLGIAKNMEEAKQKADEALKSVGMSlAVVQ--------GKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAI 188
Cdd:COG4148 92 ------LSVRGNLLYGRKRAPRAERRISFD-EVVEllgighllDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAAL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 189 DASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELM 246
Cdd:COG4148 165 DLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVL 222
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
29-245 |
2.46e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 97.46 E-value: 2.46e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSdkngYDPK---QFKLDVQPIFQNPYES 105
Cdd:PRK13639 17 ALKGINFKAEKGE--MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK----YDKKsllEVRKTVGIVFQNPDDQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 106 -FSPRKAVDTYLYNTALKLgiakNMEEAKQKADEALKSVGMSlaVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEP 184
Cdd:PRK13639 91 lFAPTVEEDVAFGPLNLGL----SKEEVEKRVKEALKAVGME--GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEP 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 185 VAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:PRK13639 165 TSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
6-220 |
3.03e-23 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 95.96 E-value: 3.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGGmLRGKKMTAVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIIlngrsYSDKNG 85
Cdd:COG4778 4 LLEVENLSKTFTLHL-QGGKRLPVLDGVSFSVAAGECVAL--TGPSGAGKSTLLKCIYGNYLPDSGSIL-----VRHDGG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 Y------DPK--------------QFkLDVqpIfqnpyesfsPRK-AVDTyLYNTALKLGIAKnmEEAKQKADEALKSVG 144
Cdd:COG4778 76 WvdlaqaSPReilalrrrtigyvsQF-LRV--I---------PRVsALDV-VAEPLLERGVDR--EEARARARELLARLN 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 145 M-----SLavvqgkYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLS 219
Cdd:COG4778 141 LperlwDL------PPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEE 213
|
.
gi 916601733 220 T 220
Cdd:COG4778 214 V 214
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
7-231 |
5.31e-23 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 99.28 E-value: 5.31e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSkvFRIGGmlrgkKMTAVDNVSLKI--GKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkn 84
Cdd:TIGR02857 322 LEFSGVS--VAYPG-----RRPALRPVSFTVppGE----RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAD-- 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 gYDPKQFKLDVQPIFQNPYeSFSprkavDTYLYNTALKLGIAKN--MEEAKQKA--DEALKSVGMSLAVVQGKYSAQFSG 160
Cdd:TIGR02857 389 -ADADSWRDQIAWVPQHPF-LFA-----GTIAENIRLARPDASDaeIREALERAglDEFVAALPQGLDTPIGEGGAGLSG 461
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 161 GELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDkyNISFIYITHDLSTAyYVSDYIATL 231
Cdd:TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALA-ALADRIVVL 529
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-235 |
5.97e-23 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 98.95 E-value: 5.97e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 2 ANDYLLEVKGVSKVFriGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsys 81
Cdd:COG3845 1 MMPPALELRGITKRF--GGV------VANDDVSLTVRPGE--IHALLGENGAGKSTLMKILYGLYQPDSGEILIDGK--- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 82 dkngydPKQFKldvqpifqnpyesfSPRKAVD----------------TYLYNTAL----KLGIAKNMEEAKQKADEALK 141
Cdd:COG3845 68 ------PVRIR--------------SPRDAIAlgigmvhqhfmlvpnlTVAENIVLglepTKGGRLDRKAARARIRELSE 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 142 SVGMSL---AVVqgkysAQFSGGELQRVSIARALITRPKLIIADEPVA-----AIDAsmkmnivnLF---KELKDKyNIS 210
Cdd:COG3845 128 RYGLDVdpdAKV-----EDLSVGEQQRVEILKALYRGARILILDEPTAvltpqEADE--------LFeilRRLAAE-GKS 193
|
250 260
....*....|....*....|....*
gi 916601733 211 FIYITHDLSTAYYVSDYIATLyRGG 235
Cdd:COG3845 194 IIFITHKLREVMAIADRVTVL-RRG 217
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
30-245 |
1.10e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 95.54 E-value: 1.10e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDpkqFKLDVQPIFQNPYESFSPR 109
Cdd:PRK13642 23 LNGVSFSITKGEWV--SIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWN---LRRKIGMVFQNPDNQFVGA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 110 KAVDTYLYNTALKlGIAKnmEEAKQKADEALKSVGMslAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAID 189
Cdd:PRK13642 98 TVEDDVAFGMENQ-GIPR--EEMIKRVDEALLAVNM--LDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 190 ASMKMNIVNLFKELKDKYNISFIYITHDLSTAyYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:PRK13642 173 PTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA-ASSDRILVMKAGEIIKEAAPSEL 227
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
2-249 |
1.96e-22 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 94.29 E-value: 1.96e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 2 ANDYLLEVKGVSkvFRIGGMLrgkkmtAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYS 81
Cdd:PRK11300 1 MSQPLLSVSGLM--MRFGGLL------AVNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 82 DKNGYdpKQFKLDVQPIFQNpYESFSPRKAVDTYL------YNTALKLGIAKN------MEEAKQKADEALKSVGmsLAV 149
Cdd:PRK11300 71 GLPGH--QIARMGVVRTFQH-VRLFREMTVIENLLvaqhqqLKTGLFSGLLKTpafrraESEALDRAATWLERVG--LLE 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 150 VQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIA 229
Cdd:PRK11300 146 HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIY 225
|
250 260
....*....|....*....|
gi 916601733 230 TLYRGGLIEYGPAKELMDYP 249
Cdd:PRK11300 226 VVNQGTPLANGTPEEIRNNP 245
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
27-246 |
2.50e-22 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 93.76 E-value: 2.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 27 MTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNG--------RSYSDKNGYdpkqfkldVQpi 98
Cdd:cd03249 16 VPILKGLSLTIPPGKTV--ALVGSSGCGKSTVVSLLERFYDPTSGEILLDGvdirdlnlRWLRSQIGL--------VS-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 99 fQNPYesfsprkavdtyLYNTALKLGIAKNMEEAKQK-ADEALKSVG-----MSLA----VVQGKYSAQFSGGELQRVSI 168
Cdd:cd03249 84 -QEPV------------LFDGTIAENIRYGKPDATDEeVEEAAKKANihdfiMSLPdgydTLVGERGSQLSGGQKQRIAI 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 169 ARALITRPKLIIADEPVAAIDA-SMKmnIVN--LFKELKDKYNISfiyITHDLSTAYYvSDYIATLYRGGLIEYGPAKEL 245
Cdd:cd03249 151 ARALLRNPKILLLDEATSALDAeSEK--LVQeaLDRAMKGRTTIV---IAHRLSTIRN-ADLIAVLQNGQVVEQGTHDEL 224
|
.
gi 916601733 246 M 246
Cdd:cd03249 225 M 225
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
7-240 |
3.87e-22 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 92.34 E-value: 3.87e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRiggmlrgkKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR--SYSDKN 84
Cdd:cd03269 1 LEVENVTKRFG--------RVTALDDISFSVEKGE--IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKplDIAARN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 --GYDPKQFKLdvqpifqnpyesFSPRKAVDTYLYNTALKlGIAKnmEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGE 162
Cdd:cd03269 71 riGYLPEERGL------------YPKMKVIDQLVYLAQLK-GLKK--EEARRRIDEWLERLE--LSEYANKRVEELSKGN 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYG 240
Cdd:cd03269 134 QQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-234 |
5.80e-22 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 91.34 E-value: 5.80e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGvskvfriggmLRGKKmtAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysdkng 85
Cdd:cd03215 4 VLEVRG----------LSVKG--AVRDVSFEVRAGE--IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGK------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 ydpkqfkldvqpifqnPYESFSPRKAVdtylyntalKLGIAKNMEEAKQkadEAL---KSVGMSLAVvqgkySAQFSGGE 162
Cdd:cd03215 63 ----------------PVTRRSPRDAI---------RAGIAYVPEDRKR---EGLvldLSVAENIAL-----SSLLSGGN 109
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 916601733 163 LQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRG 234
Cdd:cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEG 180
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
29-261 |
6.02e-22 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 95.49 E-value: 6.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFKLD-VQPIFQnpyeSFS 107
Cdd:PRK10070 43 GVKDASLAIEEGE--IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKkIAMVFQ----SFA 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 108 PRKAVdTYLYNTALKLGIAK-NMEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVA 186
Cdd:PRK10070 117 LMPHM-TVLDNTAFGMELAGiNAEERREKALDALRQVG--LENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 187 AIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHPYTELLMEAV 261
Cdd:PRK10070 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGV 268
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
23-248 |
1.26e-21 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 91.52 E-value: 1.26e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 23 RGKKMTAVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGrsysdkngYDPKQFKLDvqpifqnp 102
Cdd:cd03251 11 PGDGPPVLRDISLDIPAGETVAL--VGPSGSGKSTLVNLIPRFYDVDSGRILIDG--------HDVRDYTLA-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 103 yesfSPRKAV-----DTYLYNTALKLGIAKNMEEAKQKA-DEALKSVG-----MSLA----VVQGKYSAQFSGGELQRVS 167
Cdd:cd03251 73 ----SLRRQIglvsqDVFLFNDTVAENIAYGRPGATREEvEEAARAANahefiMELPegydTVIGERGVKLSGGQRQRIA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 168 IARALITRPKLIIADEPVAAIDASMKMNIVNLFKEL-KDKynISFIyITHDLSTAYYvSDYIATLYRGGLIEYGPAKELM 246
Cdd:cd03251 149 IARALLKDPPILILDEATSALDTESERLVQAALERLmKNR--TTFV-IAHRLSTIEN-ADRIVVLEDGKIVERGTHEELL 224
|
..
gi 916601733 247 DY 248
Cdd:cd03251 225 AQ 226
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
29-225 |
2.05e-21 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 91.68 E-value: 2.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGydpkqfklDVQPIFQNpyESFSP 108
Cdd:PRK11248 16 ALEDINLTLESGE--LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGA--------ERGVVFQN--EGLLP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 109 RKAVdtyLYNTALKL---GIAKnmEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPV 185
Cdd:PRK11248 84 WRNV---QDNVAFGLqlaGVEK--MQRLEIAHQMLKKVG--LEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 916601733 186 AAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVS 225
Cdd:PRK11248 157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMA 196
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
7-250 |
2.74e-21 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 92.84 E-value: 2.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRiggmlRGKKMTavdNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:PRK10851 3 IEIANIKKSFG-----RTQVLN---DISLDIPSGQMVAL--LGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKqfkldVQPIFQNpYESFSPRKAVDtylyNTALKLGIAK-----NMEEAKQKADEALKSVgmSLAVVQGKYSAQFSGG 161
Cdd:PRK10851 73 DRK-----VGFVFQH-YALFRHMTVFD----NIAFGLTVLPrrerpNAAAIKAKVTQLLEMV--QLAHLADRYPAQLSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 162 ELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGP 241
Cdd:PRK10851 141 QKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
....*....
gi 916601733 242 AKELMDYPA 250
Cdd:PRK10851 221 PDQVWREPA 229
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
3-260 |
3.59e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 91.40 E-value: 3.59e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 3 NDYLLEVKGVSKVFRiggmlrGKKMTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGD---IILNGRS 79
Cdd:PRK13640 2 KDNIVEFKHVSFTYP------DSKKPALNDISFSIPRGSWT--ALIGHNGSGKSTISKLINGLLLPDDNPnskITVDGIT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 80 YSDKNGYDPKQfklDVQPIFQNPYESFSPRKAVDtylyNTALKL---GIAKNmeEAKQKADEALKSVGMslAVVQGKYSA 156
Cdd:PRK13640 74 LTAKTVWDIRE---KVGIVFQNPDNQFVGATVGD----DVAFGLenrAVPRP--EMIKIVRDVLADVGM--LDYIDSEPA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 157 QFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAyYVSDYIATLYRGGL 236
Cdd:PRK13640 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKL 221
|
250 260
....*....|....*....|....
gi 916601733 237 IEYGPAKELMdypahPYTELLMEA 260
Cdd:PRK13640 222 LAQGSPVEIF-----SKVEMLKEI 240
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
29-249 |
3.68e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 91.40 E-value: 3.68e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFkldVQPIFQNPYES-FS 107
Cdd:PRK13652 19 ALNNINFIAPRNSRI--AVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF---VGLVFQNPDDQiFS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 108 PRKAVDTYLYNTALKLgiakNMEEAKQKADEALKSVGMSlaVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAA 187
Cdd:PRK13652 94 PTVEQDIAFGPINLGL----DEETVAHRVSSALHMLGLE--ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 916601733 188 IDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYP 249
Cdd:PRK13652 168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-260 |
3.75e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 91.71 E-value: 3.75e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN-- 84
Cdd:COG4152 2 LELKGLTKRF-------GDK-TAVDDVSFTVPKGE--IFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDrr 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 --GY-------DPKQfkldvqpifqnpyesfsprKAVDTYLYNTALKlGIAKNmeEAKQKADEALKSVGmsLAVVQGKYS 155
Cdd:COG4152 72 riGYlpeerglYPKM-------------------KVGEQLVYLARLK-GLSKA--EAKRRADEWLERLG--LGDRANKKV 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 156 AQFSGGELQRVSIARALITRPKLIIADEPVAAIDAsmkMNiVNLFK----ELKDKyNISFIYITHDLSTAYYVSDYIATL 231
Cdd:COG4152 128 EELSKGNQQKVQLIAALLHDPELLILDEPFSGLDP---VN-VELLKdvirELAAK-GTTVIFSSHQMELVEELCDRIVII 202
|
250 260
....*....|....*....|....*....
gi 916601733 232 YRGGLIEYGPAKELMDypAHPYTELLMEA 260
Cdd:COG4152 203 NKGRKVLSGSVDEIRR--QFGRNTLRLEA 229
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
29-246 |
6.33e-21 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 93.33 E-value: 6.33e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDI-ILNGRSYSD--KNGYDPKQFKLDVQPIFQNPYES 105
Cdd:TIGR03269 299 AVDNVSLEVKEGE--IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVnVRVGDEWVDmtKPGPDGRGRAKRYIGILHQEYDL 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 106 FSPRkavdTYLYNTALKLGIAKNMEEAKQKADEALKSVGMS---LAVVQGKYSAQFSGGELQRVSIARALITRPKLIIAD 182
Cdd:TIGR03269 377 YPHR----TVLDNLTEAIGLELPDELARMKAVITLKMVGFDeekAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 183 EPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELM 246
Cdd:TIGR03269 453 EPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
47-246 |
9.41e-21 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 89.85 E-value: 9.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 47 IVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngYDPKQFKLDVQPIFQN--PYESFSPRK--AVDTYLYNTAL- 121
Cdd:PRK10575 42 LIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLES---WSSKAFARKVAYLPQQlpAAEGMTVRElvAIGRYPWHGALg 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 122 KLGIaknmeEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFK 201
Cdd:PRK10575 119 RFGA-----ADREKVEEAISLVG--LKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVH 191
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 916601733 202 ELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELM 246
Cdd:PRK10575 192 RLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
28-254 |
1.54e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 89.77 E-value: 1.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 28 TAVDNVSLkiGKDKPVILSIVGESGCGKSTLCKMILKLHTP-----DGGDIILNGRSYSdkNGYDPKQFKLDVQPIFQ-- 100
Cdd:PRK14271 35 TVLDQVSM--GFPARAVTSLMGPTGSGKTTFLRTLNRMNDKvsgyrYSGDVLLGGRSIF--NYRDVLEFRRRVGMLFQrp 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 101 NPYesfsPRKAVDTYLYNTALKLGIAKnmEEAKQKADEALKSVGMSLAVVQGKYSAQF--SGGELQRVSIARALITRPKL 178
Cdd:PRK14271 111 NPF----PMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDAVKDRLSDSPFrlSGGQQQLLCLARTLAVNPEV 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 179 IIADEPVAAIDASMKMNIVNLFKELKDKynISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPAHPYT 254
Cdd:PRK14271 185 LLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAET 258
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
47-236 |
1.99e-20 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 88.01 E-value: 1.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 47 IVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFKLDVQPIFQNpYESFSPRKAVDtylyNTALKLGIA 126
Cdd:PRK10908 33 LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD-HHLLMDRTVYD----NVAIPLIIA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 127 -KNMEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELkD 205
Cdd:PRK10908 108 gASGDDIRRRVSAALDKVG--LLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF-N 184
|
170 180 190
....*....|....*....|....*....|.
gi 916601733 206 KYNISFIYITHDLSTAYYVSDYIATLYRGGL 236
Cdd:PRK10908 185 RVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-217 |
2.49e-20 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 87.85 E-value: 2.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANDYLLEVKGVSkvFRIGGMlrgkkmTAVDNVS--LKIGKDKpvilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR 78
Cdd:PRK10247 2 QENSPLLQLQNVG--YLAGDA------KILNNISfsLRAGEFK----LITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 79 SYSDkngYDPKQFKLDVQPIFQNPyESFSprkavDTYLYNTALKLGIAKNMEEAKQKADEaLKSVGMSLAVVQgKYSAQF 158
Cdd:PRK10247 70 DIST---LKPEIYRQQVSYCAQTP-TLFG-----DTVYDNLIFPWQIRNQQPDPAIFLDD-LERFALPDTILT-KNIAEL 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 159 SGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHD 217
Cdd:PRK10247 139 SGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
32-250 |
4.50e-20 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 89.70 E-value: 4.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKngyDPKqfKLDVQPIFQ--------NPY 103
Cdd:PRK11000 21 DINLDIHEGEFVVF--VGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDV---PPA--ERGVGMVFQsyalyphlSVA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 104 ESFSprkavdtylynTALKL-GIAKNmeEAKQKADEALKSvgMSLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIAD 182
Cdd:PRK11000 94 ENMS-----------FGLKLaGAKKE--EINQRVNQVAEV--LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 916601733 183 EPVAAIDAS----MKMNIVNLFKELKDkyniSFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPA 250
Cdd:PRK11000 159 EPLSNLDAAlrvqMRIEISRLHKRLGR----TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
24-228 |
6.20e-20 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 86.16 E-value: 6.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 24 GKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN-----GYdpkqfkldvqpI 98
Cdd:cd03226 10 KKGTEILDDLSLDLYAGE--IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKErrksiGY-----------V 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 99 FQNPyesfsprkavDTYLY-NTA---LKLGiAKNMEEAKQKADEALKSvgMSLAVVQGKYSAQFSGGELQRVSIARALIT 174
Cdd:cd03226 77 MQDV----------DYQLFtDSVreeLLLG-LKELDAGNEQAETVLKD--LDLYALKERHPLSLSGGQKQRLAIAAALLS 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 916601733 175 RPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIyITHDLSTAYYVSDYI 228
Cdd:cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIV-ITHDYEFLAKVCDRV 196
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
30-249 |
6.66e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 87.78 E-value: 6.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGgDIILNGR-SYSDKNGYDPK----QFKLDVQPIFQNPye 104
Cdd:PRK14258 23 LEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMNELES-EVRVEGRvEFFNQNIYERRvnlnRLRRQVSMVHPKP-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 105 SFSPRKAVDTYLYNTALkLGIAKNME-----EAKQKADEALKSVGMSLAvvqgKYSAQFSGGELQRVSIARALITRPKLI 179
Cdd:PRK14258 98 NLFPMSVYDNVAYGVKI-VGWRPKLEiddivESALKDADLWDEIKHKIH----KSALDLSGGQQQRLCIARALAVKPKVL 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 180 IADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYR-----GGLIEYGPAKELMDYP 249
Cdd:PRK14258 173 LMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGnenriGQLVEFGLTKKIFNSP 247
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
7-246 |
9.97e-20 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 86.44 E-value: 9.97e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN-- 84
Cdd:cd03218 1 LRAENLSKRY--------GKRKVVNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPmh 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 -------GYDPKQfkldvQPIFqnpyesfspRKAvdTYLYNTALKLGIAK-NMEEAKQKADEALKSvgMSLAVVQGKYSA 156
Cdd:cd03218 71 krarlgiGYLPQE-----ASIF---------RKL--TVEENILAVLEIRGlSKKEREEKLEELLEE--FHITHLRKSKAS 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 157 QFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISfIYIT-HDLSTAYYVSD--YIatLYR 233
Cdd:cd03218 133 SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIG-VLITdHNVRETLSITDraYI--IYE 208
|
250
....*....|...
gi 916601733 234 GGLIEYGPAKELM 246
Cdd:cd03218 209 GKVLAEGTPEEIA 221
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
44-217 |
1.53e-19 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 85.23 E-value: 1.53e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPD---GGDIILNGRsysDKNGYDPKQFKLDVqpIFQnpyesfsprkavDTYLY--- 117
Cdd:COG4136 29 ILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGR---RLTALPAEQRRIGI--LFQ------------DDLLFphl 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 118 ----NTALKLGIAKNMEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMK 193
Cdd:COG4136 92 svgeNLAFALPPTIGRAQRRARVEQALEEAG--LAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAALR 169
|
170 180
....*....|....*....|....*
gi 916601733 194 MNIVNL-FKELKDKyNISFIYITHD 217
Cdd:COG4136 170 AQFREFvFEQIRQR-GIPALLVTHD 193
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
7-246 |
1.80e-19 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 85.79 E-value: 1.80e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrgKKMTAVDNVSLKIgkDKPVILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN-- 84
Cdd:TIGR04406 2 LVAENLIKSY--------KKRKVVNDVSLSV--KSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPmh 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 -------GYDPKQ---F-KLDVqpifqnpYESFsprKAVdtylyntalkLGIAKNM--EEAKQKADEALKSvgMSLAVVQ 151
Cdd:TIGR04406 72 erarlgiGYLPQEasiFrKLTV-------EENI---MAV----------LEIRKDLdrAEREERLEALLEE--FQISHLR 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 152 GKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISfIYIT-HDLSTAYYVSDYIAT 230
Cdd:TIGR04406 130 DNKAMSLSGGERRRVEIARALATNPKFILLDEPFAGVDPIAVGDIKKIIKHLKER-GIG-VLITdHNVRETLDICDRAYI 207
|
250
....*....|....*.
gi 916601733 231 LYRGGLIEYGPAKELM 246
Cdd:TIGR04406 208 ISDGKVLAEGTPAEIV 223
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-246 |
2.17e-19 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 85.91 E-value: 2.17e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 4 DYLLEVKGVSkVFRiggmlRGKkmTAVDNVSLKIGKDKPVIlsIVGESGCGKSTLCKMILKLHTP-DGGDIILNGRSYSD 82
Cdd:COG1119 1 DPLLELRNVT-VRR-----GGK--TILDDISWTVKPGEHWA--ILGPNGAGKSTLLSLITGDLPPtYGNDVRLFGERRGG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KN--------GYdpkqfkldVQPIFQNPY-ESFSPRKAVDTYLYNTalkLGIAKN-MEEAKQKADEALKSVGMS-LAvvq 151
Cdd:COG1119 71 EDvwelrkriGL--------VSPALQLRFpRDETVLDVVLSGFFDS---IGLYREpTDEQRERARELLELLGLAhLA--- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 152 GKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHdlstayYVSDYIATL 231
Cdd:COG1119 137 DRPFGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTH------HVEEIPPGI 210
|
250 260
....*....|....*....|.
gi 916601733 232 YR------GGLIEYGPAKELM 246
Cdd:COG1119 211 THvlllkdGRVVAAGPKEEVL 231
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1-247 |
2.22e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 87.21 E-value: 2.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANDYLLEVKGVSKVFRIGgmlRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGG-----DIIL 75
Cdd:PRK13631 16 LSDDIILRVKNLYCVFDEK---QENELVALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIKSKYGtiqvgDIYI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 76 NGRSYSDKNGYDPKQFKLD--------VQPIFQNP-YESFspRKAVDTYLYNTALKLGIAKNmeEAKQKADEALKSVGMS 146
Cdd:PRK13631 91 GDKKNNHELITNPYSKKIKnfkelrrrVSMVFQFPeYQLF--KDTIEKDIMFGPVALGVKKS--EAKKLAKFYLNKMGLD 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 147 LAVVQgKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKdKYNISFIYITHDLSTAYYVSD 226
Cdd:PRK13631 167 DSYLE-RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK-ANNKTVFVITHTMEHVLEVAD 244
|
250 260
....*....|....*....|..
gi 916601733 227 YIATLYRGGLIEYG-PAKELMD 247
Cdd:PRK13631 245 EVIVMDKGKILKTGtPYEIFTD 266
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
32-250 |
2.52e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 86.61 E-value: 2.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSdkNGYDPKQFKL---DVQPIFQNP----YE 104
Cdd:PRK13634 27 NVSIPSGS----YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT--AGKKNKKLKPlrkKVGIVFQFPehqlFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 105 -------SFSPrkavdtylyntaLKLGIAKnmEEAKQKADEALKSVGMSLAVVQgKYSAQFSGGELQRVSIARALITRPK 177
Cdd:PRK13634 101 etvekdiCFGP------------MNFGVSE--EDAKQKAREMIELVGLPEELLA-RSPFELSGGQMRRVAIAGVLAMEPE 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 916601733 178 LIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPA 250
Cdd:PRK13634 166 VLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
47-249 |
2.54e-19 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 89.01 E-value: 2.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 47 IVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngYDPKQFKLDVQPIFQNPYesfsprkavdtyLYNTALKLGIA 126
Cdd:TIGR00958 512 LVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ---YDHHYLHRQVALVGQEPV------------LFSGSVRENIA 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 127 -----KNMEE----AKQK-ADEALKSVGMSLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASmkmnI 196
Cdd:TIGR00958 577 ygltdTPDEEimaaAKAAnAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----C 652
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 916601733 197 VNLFKELKDKYNISFIYITHDLSTAYYvSDYIATLYRGGLIEYGPAKELMDYP 249
Cdd:TIGR00958 653 EQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
3-245 |
2.81e-19 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 88.45 E-value: 2.81e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 3 NDYLLEVKGVSKVFriGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHtPDG---GDIILNGRS 79
Cdd:PRK13549 2 MEYLLEMKNITKTF--GGV------KALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVY-PHGtyeGEIIFEGEE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 80 YSDKNGYDPKQFKLDVqpIFQN----PYESFsprkAVDTYLYNTALKLGIAkNMEEAKQKADEALKSVGMSLAVVQGKYs 155
Cdd:PRK13549 71 LQASNIRDTERAGIAI--IHQElalvKELSV----LENIFLGNEITPGGIM-DYDAMYLRAQKLLAQLKLDINPATPVG- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 156 aQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGG 235
Cdd:PRK13549 143 -NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGR 220
|
250
....*....|
gi 916601733 236 LIEYGPAKEL 245
Cdd:PRK13549 221 HIGTRPAAGM 230
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
6-240 |
5.30e-19 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 83.96 E-value: 5.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIggmlRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSdKNG 85
Cdd:cd03266 1 MITADALTKRFRD----VKKTVQAVDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV-KEP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPKQfKLDVQPIFQNPYESFSPRKAVDTY--LYntalklGIAKnmEEAKQKADEALKSVGMslAVVQGKYSAQFSGGEL 163
Cdd:cd03266 74 AEARR-RLGFVSDSTGLYDRLTARENLEYFagLY------GLKG--DELTARLEELADRLGM--EELLDRRVGGFSTGMR 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 916601733 164 QRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYG 240
Cdd:cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
24-240 |
5.99e-19 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 82.75 E-value: 5.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 24 GKKMTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFKLdvqpIFQNPY 103
Cdd:cd03247 12 EQEQQVLKNLSLELKQGEKI--ALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV----LNQRPY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 104 esfsprkavdtyLYNTALklgiaknmeeakqkadeaLKSVGmslavvqgkysAQFSGGELQRVSIARALITRPKLIIADE 183
Cdd:cd03247 86 ------------LFDTTL------------------RNNLG-----------RRFSGGERQRLALARILLQDAPIVLLDE 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 184 PVAAIDASMKMNIVNL-FKELKDKyniSFIYITHDLSTAYYVsDYIATLYRGGLIEYG 240
Cdd:cd03247 125 PTVGLDPITERQLLSLiFEVLKDK---TLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
7-245 |
7.49e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 84.80 E-value: 7.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRIGGMLRGKkmtAVDNVSLKIgKDKPVIlSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSY-SDKNG 85
Cdd:PRK13649 3 INLQNVSYTYQAGTPFEGR---ALFDVNLTI-EDGSYT-AFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLItSTSKN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPKQFKLDVQPIFQNPyES--FSprkavDTYLYNTAL---KLGIAKnmEEAKQKADEALKSVGMSLAVVqGKYSAQFSG 160
Cdd:PRK13649 78 KDIKQIRKKVGLVFQFP-ESqlFE-----ETVLKDVAFgpqNFGVSQ--EEAEALAREKLALVGISESLF-EKNPFELSG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 161 GELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYG 240
Cdd:PRK13649 149 GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
|
....*
gi 916601733 241 PAKEL 245
Cdd:PRK13649 228 KPKDI 232
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
7-245 |
1.82e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 84.11 E-value: 1.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRIGGMLRGKkmtAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:PRK13641 3 IKFENVDYIYSPGTPMEKK---GLDNISFELEEGSFV--ALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DP-KQFKLDVQPIFQNPyesfsprkavDTYLY-NTALK------LGIAKNMEEAKQKADEALKSVGMSLAVVQgKYSAQF 158
Cdd:PRK13641 78 KNlKKLRKKVSLVFQFP----------EAQLFeNTVLKdvefgpKNFGFSEDEAKEKALKWLKKVGLSEDLIS-KSPFEL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 159 SGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKdKYNISFIYITHDLSTAYYVSDYIATLYRGGLIE 238
Cdd:PRK13641 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ-KAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
....*..
gi 916601733 239 YGPAKEL 245
Cdd:PRK13641 226 HASPKEI 232
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
6-217 |
2.85e-18 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 81.76 E-value: 2.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVfriggmlRGKKmTAVDNVSLKI--GKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDk 83
Cdd:COG4133 2 MLEAENLSCR-------RGER-LLFSGLSFTLaaGE----ALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRD- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 84 ngyDPKQFKLDVQPIFQNP--YESFSPRKAVDTYlynTALKlgiakNMEEAKQKADEALKSVGmsLAVVQGKYSAQFSGG 161
Cdd:COG4133 69 ---AREDYRRRLAYLGHADglKPELTVRENLRFW---AALY-----GLRADREAIDEALEAVG--LAGLADLPVRQLSAG 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 162 ELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNIsFIYITHD 217
Cdd:COG4133 136 QKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLARGGA-VLLTTHQ 190
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
44-234 |
3.14e-18 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 81.77 E-value: 3.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSdknGYDPKQfkLDVQPIFQ--NPYESFSPRKAVDTYLyNTAL 121
Cdd:cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT---AAPPAD--RPVSMLFQenNLFAHLTVEQNVGLGL-SPGL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 122 KLGiaknmEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFK 201
Cdd:cd03298 100 KLT-----AEDRQAIEVALARVG--LAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL 172
|
170 180 190
....*....|....*....|....*....|...
gi 916601733 202 ELKDKYNISFIYITHDLSTAYYVSDYIATLYRG 234
Cdd:cd03298 173 DLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
6-256 |
3.54e-18 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 85.15 E-value: 3.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSkvFRIGGmlRGKKmtAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNG 85
Cdd:TIGR02203 330 DVEFRNVT--FRYPG--RDRP--ALDSISLVIEPGETV--ALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPK-QFKLDVQPIFQnpyesFSprkavDTYLYNTALKLGIAKNMEEAKQKADEA-LKSV--GMSLAVVQ--GKYSAQFS 159
Cdd:TIGR02203 402 ASLRrQVALVSQDVVL-----FN-----DTIANNIAYGRTEQADRAEIERALAAAyAQDFvdKLPLGLDTpiGENGVLLS 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDkyNISFIYITHDLSTAYYvSDYIATLYRGGLIEY 239
Cdd:TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEK-ADRIVVMDDGRIVER 548
|
250
....*....|....*..
gi 916601733 240 GPAKELMDYPAHpYTEL 256
Cdd:TIGR02203 549 GTHNELLARNGL-YAQL 564
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
45-221 |
3.72e-18 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 82.13 E-value: 3.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 45 LSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFKL-DVQPIFQnpyeSFSPRKAVDTyLYNTAL-K 122
Cdd:PRK10584 39 IALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAkHVGFVFQ----SFMLIPTLNA-LENVELpA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 123 LGIAKNMEEAKQKADEALKSVGMslavvqGK----YSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVN 198
Cdd:PRK10584 114 LLRGESSRQSRNGAKALLEQLGL------GKrldhLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187
|
170 180
....*....|....*....|...
gi 916601733 199 LFKELKDKYNISFIYITHDLSTA 221
Cdd:PRK10584 188 LLFSLNREHGTTLILVTHDLQLA 210
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
29-245 |
5.98e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 82.75 E-value: 5.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSD--KNGYDPKQFKLDVQPIFQNP-YES 105
Cdd:PRK13645 26 ALNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPAnlKKIKEVKRLRKEIGLVFQFPeYQL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 106 FSprkavDTYLYNTAL-KLGIAKNMEEAKQKADEALKSVGMSLAVVQgKYSAQFSGGELQRVSIARALITRPKLIIADEP 184
Cdd:PRK13645 104 FQ-----ETIEKDIAFgPVNLGENKQEAYKKVPELLKLVQLPEDYVK-RSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 185 VAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:PRK13645 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
44-253 |
6.73e-18 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 83.39 E-value: 6.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSD------------KNGYdpkqfkldvqpIFQnpyesfsprka 111
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDaekgiclppekrRIGY-----------VFQ----------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 112 vDTYL---YNTA--LKLGIAKNMeeakqkADEALKSVGM-SLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPV 185
Cdd:PRK11144 84 -DARLfphYKVRgnLRYGMAKSM------VAQFDKIVALlGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 186 AAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDYPA-HPY 253
Cdd:PRK11144 157 ASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAmRPW 225
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
24-237 |
7.49e-18 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 81.16 E-value: 7.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 24 GKKMTAVDNVSLKI--GKdkpvILSIVGESGCGKSTLCKMIL-KLHTPD--GGDIILNGRSYSdkngydPKQFKLDVQPI 98
Cdd:cd03234 17 NKYARILNDVSLHVesGQ----VMAILGSSGSGKTTLLDAISgRVEGGGttSGQILFNGQPRK------PDQFQKCVAYV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 99 FQNpyESFSPRKAVDTYLYNTALKLGIAKNMEEAKQKADEALKSVGMSLAVVQGKYSAQFSGGELQRVSIARALITRPKL 178
Cdd:cd03234 87 RQD--DILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 179 IIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLI 237
Cdd:cd03234 165 LILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
29-245 |
7.56e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 82.13 E-value: 7.56e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGyDP--KQFKLDVQPIFQNPyESF 106
Cdd:PRK13646 22 AIHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK-DKyiRPVRKRIGMVFQFP-ESQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 107 SPRKAVDTYLYNTALKLGIakNMEEAKQKADEALKSVGMSLAVVQgKYSAQFSGGELQRVSIARALITRPKLIIADEPVA 186
Cdd:PRK13646 98 LFEDTVEREIIFGPKNFKM--NLDEVKNYAHRLLMDLGFSRDVMS-QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 187 AIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:PRK13646 175 GLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
7-245 |
7.75e-18 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 81.23 E-value: 7.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrgKKMTAVDNVSLKIGKDKpvilsIV---GESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDK 83
Cdd:COG1137 4 LEAENLVKSY--------GKRTVVKDVSLEVNQGE-----IVgllGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 84 N---------GYDPKQ---F-KLDVQpifQNPYesfsprkAVdtylyntaLKLgIAKNMEEAKQKADEAL---------K 141
Cdd:COG1137 71 PmhkrarlgiGYLPQEasiFrKLTVE---DNIL-------AV--------LEL-RKLSKKEREERLEELLeefgithlrK 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 142 SVGMSLavvqgkysaqfSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISfIYIT-HD--- 217
Cdd:COG1137 132 SKAYSL-----------SGGERRRVEIARALATNPKFILLDEPFAGVDPIAVADIQKIIRHLKER-GIG-VLITdHNvre 198
|
250 260 270
....*....|....*....|....*....|.
gi 916601733 218 -LStayyVSD--YIatLYRGGLIEYGPAKEL 245
Cdd:COG1137 199 tLG----ICDraYI--ISEGKVLAEGTPEEI 223
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
235-319 |
8.93e-18 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 77.02 E-value: 8.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 235 GLIEYGPAKELMDYPAHPYTELLMEAVPRVGDKWNQEFVMP-------DMESKeyaltcCKFAPRCPYATDECRQNKPGE 307
Cdd:TIGR01727 1 KIVETGPAEEIFKNPLHPYTKALLSAIPTIKKRDRKLISIPgevpsliNLPSG------CRFYPRCPYAQDECRKEPPAL 74
|
90
....*....|..
gi 916601733 308 VAIEGGRSVYCF 319
Cdd:TIGR01727 75 VEIAEGHRVACH 86
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
6-217 |
1.76e-17 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 83.23 E-value: 1.76e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRiggmlRGKKMTAV-DNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN 84
Cdd:PRK10535 4 LLELKDIRRSYP-----SGEEQVEVlKGISLDIYAGEMV--AIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 GYDPKQFKLD-VQPIFQNpYESFSPRKAvdtyLYNT---ALKLGIAKNmeEAKQKADEALKSVGMSLAVvqGKYSAQFSG 160
Cdd:PRK10535 77 ADALAQLRREhFGFIFQR-YHLLSHLTA----AQNVevpAVYAGLERK--QRLLRAQELLQRLGLEDRV--EYQPSQLSG 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 916601733 161 GELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNiSFIYITHD 217
Cdd:PRK10535 148 GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH-TVIIVTHD 203
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
6-245 |
4.83e-17 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 81.79 E-value: 4.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHtPDG---GDIILNGRSYSD 82
Cdd:TIGR02633 1 LLEMKGIVKTF--GGV------KALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVY-PHGtwdGEIYWSGSPLKA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KNGYDPKQFKLDVqpIFQNpyESFSPRKAV--DTYLYNTALKLGIAKNMEEAKQKADEALKSVGMSlAVVQGKYSAQFSG 160
Cdd:TIGR02633 70 SNIRDTERAGIVI--IHQE--LTLVPELSVaeNIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLD-ADNVTRPVGDYGG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 161 GELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYG 240
Cdd:TIGR02633 145 GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223
|
....*
gi 916601733 241 PAKEL 245
Cdd:TIGR02633 224 DMSTM 228
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
4-263 |
5.57e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 79.78 E-value: 5.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 4 DYLLEVKGVSKVFRIGgmlrgkkMTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDK 83
Cdd:PRK13647 2 DNIIEVEDLHFRYKDG-------TKALKGLSLSIPEGSKT--ALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 84 NgydPKQFKLDVQPIFQNPYESFSPRKAVDTYLYNtALKLGIAKnmEEAKQKADEALKSVGMSlaVVQGKYSAQFSGGEL 163
Cdd:PRK13647 73 N---EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG-PVNMGLDK--DEVERRVEEALKAVRMW--DFRDKPPYHLSYGQK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 164 QRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELkDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAK 243
Cdd:PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223
|
250 260 270
....*....|....*....|....*....|....*
gi 916601733 244 ELMD----------YPA-----HPYTELLMEAVPR 263
Cdd:PRK13647 224 LLTDediveqaglrLPLvaqifEDLPELGQSKLPL 258
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
28-245 |
5.58e-17 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 78.72 E-value: 5.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 28 TAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN---------GYDPKQfkldvQPI 98
Cdd:TIGR03410 14 HILRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPpheraragiAYVPQG-----REI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 99 FqnpyesfsPRKAVDTylyNtaLKLGIAKNMEEAKQKADE------ALKSVgmslavvQGKYSAQFSGGELQRVSIARAL 172
Cdd:TIGR03410 87 F--------PRLTVEE---N--LLTGLAALPRRSRKIPDEiyelfpVLKEM-------LGRRGGDLSGGQQQQLAIARAL 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 916601733 173 ITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:TIGR03410 147 VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
7-219 |
6.19e-17 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 78.40 E-value: 6.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSkvFRIGGMlrgkKMTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSdkngy 86
Cdd:cd03245 3 IEFRNVS--FSYPNQ----EIPALDNVSLTIRAGEKV--AIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR----- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 dpkqfKLDVQPIFQNPyeSFSPRkavDTYLYNTALKLGIAKNMEEAKqkaDEALKSV---------------GMSLAVvq 151
Cdd:cd03245 70 -----QLDPADLRRNI--GYVPQ---DVTLFYGTLRDNITLGAPLAD---DERILRAaelagvtdfvnkhpnGLDLQI-- 134
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 152 GKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIV-NLFKELKDKyniSFIYITHDLS 219
Cdd:cd03245 135 GERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKeRLRQLLGDK---TLIIITHRPS 200
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
7-264 |
8.80e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 81.00 E-value: 8.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRiggmlrGKKmtAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMI--LKLHTPDGGDIILNgRSYSDKN 84
Cdd:TIGR03269 1 IEVKNLTKKFD------GKE--VLKNISFTIEEGE--VLGILGRSGAGKSVLMHVLrgMDQYEPTSGRIIYH-VALCEKC 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 GY-DPKQFKLDVQPIFQNPYESFSPR--KAVDTYLYNTALKLGIA------------------KNMEEAKQKADEALKSV 143
Cdd:TIGR03269 70 GYvERPSKVGEPCPVCGGTLEPEEVDfwNLSDKLRRRIRKRIAIMlqrtfalygddtvldnvlEALEEIGYEGKEAVGRA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 144 GMSLAVVQGKY-----SAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDL 218
Cdd:TIGR03269 150 VDLIEMVQLSHrithiARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 916601733 219 STAYYVSDYIATLYRGGLIEYGPAKELMdypahpytELLMEAVPRV 264
Cdd:TIGR03269 230 EVIEDLSDKAIWLENGEIKEEGTPDEVV--------AVFMEGVSEV 267
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
44-245 |
9.96e-17 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 78.90 E-value: 9.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRS--YSDKNGYDPKQfklDVQPIFQNPYESFSpRKAVDTYLYNTAL 121
Cdd:PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPldYSKRGLLALRQ---QVATVFQDPEQQIF-YTDIDSDIAFSLR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 122 KLGIAKnmEEAKQKADEALksvgmSLAVVQGkYSAQ----FSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIV 197
Cdd:PRK13638 105 NLGVPE--AEITRRVDEAL-----TLVDAQH-FRHQpiqcLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 916601733 198 NLFKELKDKYNiSFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:PRK13638 177 AIIRRIVAQGN-HVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
7-247 |
2.01e-16 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 77.41 E-value: 2.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSkvFRIGG--MLRGkkmtavdnVSLKIGKDKpvILSIVGESGCGKSTLCKMIL--KLHTPDGGDIILNGRSYSD 82
Cdd:COG0396 1 LEIKNLH--VSVEGkeILKG--------VNLTIKPGE--VHAIMGPNGSGKSTLAKVLMghPKYEVTSGSILLDGEDILE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 kngydpkqfkLDVQPI--------FQNPYE----SFSprkavdtYLYNTAL--KLGIAKNMEEAKQKADEALKSVGMSLA 148
Cdd:COG0396 69 ----------LSPDERaragiflaFQYPVEipgvSVS-------NFLRTALnaRRGEELSAREFLKLLKEKMKELGLDED 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 149 VVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDA-SMKMnIVNLFKELKDKyNISFIYITH-----DlstaY 222
Cdd:COG0396 132 FLDRYVNEGFSGGEKKRNEILQMLLLEPKLAILDETDSGLDIdALRI-VAEGVNKLRSP-DRGILIITHyqrilD----Y 205
|
250 260
....*....|....*....|....*
gi 916601733 223 YVSDYIATLYRGGLIEYGPaKELMD 247
Cdd:COG0396 206 IKPDFVHVLVDGRIVKSGG-KELAL 229
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
237-300 |
2.07e-16 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 72.43 E-value: 2.07e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 237 IEYGPAKELMDYPAHPYTELLMEAVPRVGDKWNQEFVMP-DMESKEYALTCCKFAPRCPYATDEC 300
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRLDPPKRPLYTIPgNVPSLLELPEGCPFAPRCPFATEEC 65
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
34-220 |
2.29e-16 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 77.13 E-value: 2.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 34 SLKIGKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngYDPKQFKLDVQPIFQNPyeSFSPRKAVD 113
Cdd:cd03248 36 TLHPGE----VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQ---YEHKYLHSKVSLVGQEP--VLFARSLQD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 114 tylyNTALKLGIAKNME--EAKQKADEALKSVGMSLAVVQ--GKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAID 189
Cdd:cd03248 107 ----NIAYGLQSCSFECvkEAAQKAHAHSFISELASGYDTevGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182
|
170 180 190
....*....|....*....|....*....|.
gi 916601733 190 ASMKMNIVNLFKElkDKYNISFIYITHDLST 220
Cdd:cd03248 183 AESEQQVQQALYD--WPERRTVLVIAHRLST 211
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
6-261 |
2.35e-16 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 77.50 E-value: 2.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSkvFRIGGMlrgkkmTAVDNVSLKI--GKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDK 83
Cdd:PRK13548 2 MLEARNLS--VRLGGR------TLLDDVSLTLrpGE----VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR---PL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 84 NGYDPKQF--KLDVQPifQNPYESFSprkavdtYLYNTALKLGIA---KNMEEAKQKADEALKSVGMS-LAvvqGKYSAQ 157
Cdd:PRK13548 67 ADWSPAELarRRAVLP--QHSSLSFP-------FTVEEVVAMGRAphgLSRAEDDALVAAALAQVDLAhLA---GRDYPQ 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 158 FSGGELQRVSIARALI------TRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLS-TAYYvSDYIAT 230
Cdd:PRK13548 135 LSGGEQQRVQLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNlAARY-ADRIVL 213
|
250 260 270
....*....|....*....|....*....|.
gi 916601733 231 LYRGGLIEYGPAKELMdypahpyTELLMEAV 261
Cdd:PRK13548 214 LHQGRLVADGTPAEVL-------TPETLRRV 237
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
46-245 |
3.28e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 77.85 E-value: 3.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 46 SIVGESGCGKSTLCKMILKLHTPDGG-----DIILNgrSYSDKNGYDPKQFKLDVqpIFQNPYESFSPrkavDTYLYNTA 120
Cdd:PRK13643 36 ALIGHTGSGKSTLLQHLNGLLQPTEGkvtvgDIVVS--STSKQKEIKPVRKKVGV--VFQFPESQLFE----ETVLKDVA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 121 L---KLGIAKnmEEAKQKADEALKSVGMSLAVVQgKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIV 197
Cdd:PRK13643 108 FgpqNFGIPK--EKAEKIAAEKLEMVGLADEFWE-KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMM 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 916601733 198 NLFKELKdKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:PRK13643 185 QLFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-250 |
3.66e-16 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 78.35 E-value: 3.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANdylLEVKGVSKVFriggmlrGKKMTAVDNVSLKIGkDKPVILsIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsy 80
Cdd:PRK11650 1 MAG---LKLQAVRKSY-------DGKTQVIKGIDLDVA-DGEFIV-LVGPSGCGKSTLLRMVAGLERITSGEIWIGGR-- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 sDKNGYDPKQfkLDVQPIFQNpyesfsprkavdtY-LY-------NTA--LKL-GIAKnmEEAKQKADEALKSVGMslav 149
Cdd:PRK11650 67 -VVNELEPAD--RDIAMVFQN-------------YaLYphmsvreNMAygLKIrGMPK--AEIEERVAEAARILEL---- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 150 vqGKY----SAQFSGGELQRVSIARALITRPKLIIADEPVAAIDA----SMKMNIVNLFKELKdkynISFIYITHDLSTA 221
Cdd:PRK11650 125 --EPLldrkPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAklrvQMRLEIQRLHRRLK----TTSLYVTHDQVEA 198
|
250 260 270
....*....|....*....|....*....|
gi 916601733 222 YYVSDYIATLYrGGLIE-YGPAKELMDYPA 250
Cdd:PRK11650 199 MTLADRVVVMN-GGVAEqIGTPVEVYEKPA 227
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
26-247 |
3.84e-16 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 76.32 E-value: 3.84e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 26 KMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN---------GYDPKqfkldVQ 96
Cdd:cd03224 12 KSQILFGVSLTVPEGE--IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPpheraragiGYVPE-----GR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 97 PIFQNpyesFSPRKavdtylyNtaLKLGIAKNMEEAKQKADEALKSVGMSLAVVQGKYSAQFSGGELQRVSIARALITRP 176
Cdd:cd03224 85 RIFPE----LTVEE-------N--LLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRP 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 177 KLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMD 247
Cdd:cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
32-218 |
3.88e-16 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 76.69 E-value: 3.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIIlngRSYSDKNGYDPKQFKLDvqpifqnpyesfsprka 111
Cdd:PRK09544 22 DVSLELKPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK---RNGKLRIGYVPQKLYLD----------------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 112 vdtylynTALKLGIAKNM--EEAKQKADealksVGMSLAVVQGKYSAQF-----SGGELQRVSIARALITRPKLIIADEP 184
Cdd:PRK09544 80 -------TTLPLTVNRFLrlRPGTKKED-----ILPALKRVQAGHLIDApmqklSGGETQRVLLARALLNRPQLLVLDEP 147
|
170 180 190
....*....|....*....|....*....|....
gi 916601733 185 VAAIDASMKMNIVNLFKELKDKYNISFIYITHDL 218
Cdd:PRK09544 148 TQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
21-261 |
3.92e-16 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 76.98 E-value: 3.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 21 MLRGKKMTA-------VDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngYDPKQF-- 91
Cdd:PRK11231 2 TLRTENLTVgygtkriLNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISM---LSSRQLar 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 92 KLDVQP-IFQNPyESFSPRKAVdTYLYNTALKLgIAKNMEEAKQKADEALKSVGMS-LAVvqgKYSAQFSGGELQRVSIA 169
Cdd:PRK11231 77 RLALLPqHHLTP-EGITVRELV-AYGRSPWLSL-WGRLSAEDNARVNQAMEQTRINhLAD---RRLTDLSGGQRQRAFLA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 170 RALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMdyp 249
Cdd:PRK11231 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM--- 226
|
250
....*....|..
gi 916601733 250 ahpyTELLMEAV 261
Cdd:PRK11231 227 ----TPGLLRTV 234
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
7-221 |
6.51e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 77.05 E-value: 6.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRIGGMLrgkKMTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:PRK13651 3 IKVKNIVKIFNKKLPT---ELKALDNVSVEINQGEFI--AIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQF---KLDVQP------------------IFQ-NPYESFspRKAVDTYLYNTALKLGIAKnmEEAKQKADEALKSVG 144
Cdd:PRK13651 78 KEKEKvleKLVIQKtrfkkikkikeirrrvgvVFQfAEYQLF--EQTIEKDIIFGPVSMGVSK--EEAKKRAAKYIELVG 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 916601733 145 MSLAVVQgKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTA 221
Cdd:PRK13651 154 LDESYLQ-RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNV 228
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
7-218 |
8.71e-16 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 78.17 E-value: 8.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSkvFRIGGMLRgkkmtAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:TIGR02868 335 LELRDLS--AGYPGAPP-----VLDGVSLDLPPGERV--AILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKldvqpifqnpyeSFSPRKAvdtYLYNTALK--LGIAKNmEEAKQKADEALKSVGMS---------LAVVQGKYS 155
Cdd:TIGR02868 406 EVRRRV------------SVCAQDA---HLFDTTVRenLRLARP-DATDEELWAALERVGLAdwlralpdgLDTVLGEGG 469
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 156 AQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIV-NLFKELKDKyniSFIYITHDL 218
Cdd:TIGR02868 470 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLeDLLAALSGR---TVVLITHHL 530
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-246 |
1.18e-15 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 77.56 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 2 ANDYLLEVKGVSkvFRiggmLRGKKMTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYS 81
Cdd:PRK11160 334 ADQVSLTLNNVS--FT----YPDQPQPVLKGLSLQIKAGEKV--ALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIA 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 82 DkngYDPKQFKLDVQPIFQNPYesfsprkavdtyLYNTALKlgiaKNMEEAKQKAD-----EALKSVGMSlAVVQGKYS- 155
Cdd:PRK11160 406 D---YSEAALRQAISVVSQRVH------------LFSATLR----DNLLLAAPNASdealiEVLQQVGLE-KLLEDDKGl 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 156 --------AQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKEL-KDKyniSFIYITHDLsTAYYVSD 226
Cdd:PRK11160 466 nawlgeggRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHaQNK---TVLMITHRL-TGLEQFD 541
|
250 260
....*....|....*....|
gi 916601733 227 YIATLYRGGLIEYGPAKELM 246
Cdd:PRK11160 542 RICVMDNGQIIEQGTHQELL 561
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
7-236 |
1.34e-15 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 73.40 E-value: 1.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSkvFRIGGmlrgKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNGY 86
Cdd:cd03246 1 LEVENVS--FRYPG----AEPPVLRNVSFSIEPGE--SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGA---DISQW 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFkldvqpifqnpyesfspRKAVDTYLYNTALKLG-IAKNMeeakqkadealksvgmslavvqgkysaqFSGGELQR 165
Cdd:cd03246 70 DPNEL-----------------GDHVGYLPQDDELFSGsIAENI----------------------------LSGGQRQR 104
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 166 VSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKdKYNISFIYITHDLSTAYYVsDYIATLYRGGL 236
Cdd:cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK-AAGATRIVIAHRPETLASA-DRILVLEDGRV 173
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
8-247 |
1.73e-15 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 74.73 E-value: 1.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 8 EVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngYD 87
Cdd:COG4604 3 EIKNVSKRY-------GGK-VVLDDVSLTIPKGG--ITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVAT---TP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 88 PKQF--KLDVQPifQNPyeSFSPRKAVDT------YLYN----TAlklgiaknmeEAKQKADEALKSvgMSLAVVQGKYS 155
Cdd:COG4604 70 SRELakRLAILR--QEN--HINSRLTVRElvafgrFPYSkgrlTA----------EDREIIDEAIAY--LDLEDLADRYL 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 156 AQFSGGELQRVSIARALITRPKLIIADEPVAAIDasMK--MNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYR 233
Cdd:COG4604 134 DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD--MKhsVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKD 211
|
250
....*....|....
gi 916601733 234 GGLIEYGPAKELMD 247
Cdd:COG4604 212 GRVVAQGTPEEIIT 225
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
6-238 |
2.25e-15 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 76.75 E-value: 2.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHtPDG---GDIILNGrsysd 82
Cdd:NF040905 1 ILEMRGITKTF--PGV------KALDDVNLSVREGE--IHALCGENGAGKSTLMKVLSGVY-PHGsyeGEILFDG----- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 kngyDPKQFK-------LDVQPIFQN----PYESFsprkAVDTYLYNTALKLGIAkNMEEAKQKADEALKSVG------- 144
Cdd:NF040905 65 ----EVCRFKdirdseaLGIVIIHQElaliPYLSI----AENIFLGNERAKRGVI-DWNETNRRARELLAKVGldespdt 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 145 --MSLAVvqgkysaqfsgGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAY 222
Cdd:NF040905 136 lvTDIGV-----------GKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQ-GITSIIISHKLNEIR 203
|
250
....*....|....*.
gi 916601733 223 YVSDYIATLYRGGLIE 238
Cdd:NF040905 204 RVADSITVLRDGRTIE 219
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
7-218 |
2.27e-15 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 74.29 E-value: 2.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRI-------GGMLRG------KKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDI 73
Cdd:cd03267 1 IEVSNLSKSYRVyskepglIGSLKSlfkrkyREVEALKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLLQPTSGEV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 74 ILNG-RSYSDKNGYdPKQFKLdvqpIFQNPYESFSPRKAVDTYLYNTALkLGIAKnmEEAKQKADEAlkSVGMSLAVVQG 152
Cdd:cd03267 79 RVAGlVPWKRRKKF-LRRIGV----VFGQKTQLWWDLPVIDSFYLLAAI-YDLPP--ARFKKRLDEL--SELLDLEELLD 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 153 KYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDL 218
Cdd:cd03267 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
32-245 |
2.83e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 74.88 E-value: 2.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR--SYSDKNGYDPKQfklDVQPIFQNP-YESFSP 108
Cdd:PRK13636 26 NINIKKGE----VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKpiDYSRKGLMKLRE---SVGMVFQDPdNQLFSA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 109 RKAVDTYLynTALKLGIAKnmEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAI 188
Cdd:PRK13636 99 SVYQDVSF--GAVNLKLPE--DEVRKRVDNALKRTG--IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 916601733 189 DASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:PRK13636 173 DPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
30-240 |
3.32e-15 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 72.97 E-value: 3.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIgkdKP-VILSIVGESGCGKSTLCKMIL-KLHTP-DGGDIILNGRSYsdkngyDPKQFKLDVQPIFQNpyESF 106
Cdd:cd03213 25 LKNVSGKA---KPgELTAIMGPSGAGKSTLLNALAgRRTGLgVSGEVLINGRPL------DKRSFRKIIGYVPQD--DIL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 107 SPRKAVDTYLYNTAlklgiaknmeeakqkadeALKSVgmslavvqgkysaqfSGGELQRVSIARALITRPKLIIADEPVA 186
Cdd:cd03213 94 HPTLTVRETLMFAA------------------KLRGL---------------SGGERKRVSIALELVSNPSLLFLDEPTS 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 187 AIDASMKMNIVNLFKELKDKyNISFIYITHDLST-AYYVSDYIATLYRGGLIEYG 240
Cdd:cd03213 141 GLDSSSALQVMSLLRRLADT-GRTIICSIHQPSSeIFELFDKLLLLSQGRVIYFG 194
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
6-246 |
5.91e-15 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 73.61 E-value: 5.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSkvFRIGGmlRgkkmTAVDNVSLKI--GKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysdk 83
Cdd:COG4559 1 MLEAENLS--VRLGG--R----TLLDDVSLTLrpGE----LTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGR----- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 84 ngydpkqfkldvqpifqnPYESFSP-----RKAV---DTYLyN---TAL---KLGIAKNMEEAKQK---ADEALKSVGMS 146
Cdd:COG4559 64 ------------------PLAAWSPwelarRRAVlpqHSSL-AfpfTVEevvALGRAPHGSSAAQDrqiVREALALVGLA 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 147 -LAvvqGKYSAQFSGGELQRVSIARALI-------TRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDL 218
Cdd:COG4559 125 hLA---GRSYQTLSGGEQQRVQLARVLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDL 200
|
250 260
....*....|....*....|....*....
gi 916601733 219 S-TAYYvSDYIATLYRGGLIEYGPAKELM 246
Cdd:COG4559 201 NlAAQY-ADRILLLHQGRLVAQGTPEEVL 228
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
24-246 |
6.36e-15 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 75.44 E-value: 6.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 24 GKKMTAVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngYDPKQFKLDVQPIFQNpy 103
Cdd:PRK11176 353 GKEVPALRNINFKIPAGKTVAL--VGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD---YTLASLRNQVALVSQN-- 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 104 esfsprkavdTYLYNTALKLGIA---------KNMEEAKQKAD--EALKSVGMSLAVVQGKYSAQFSGGELQRVSIARAL 172
Cdd:PRK11176 426 ----------VHLFNDTIANNIAyarteqysrEQIEEAARMAYamDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL 495
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 173 ITRPKLIIADEPVAAIDASMKMNIVNLFKELKDkyNISFIYITHDLSTAYYvSDYIATLYRGGLIEYGPAKELM 246
Cdd:PRK11176 496 LRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAELL 566
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
30-251 |
2.37e-14 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 72.17 E-value: 2.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHT----PDG----GDIILNGRSYSdknGYDPKQFKL--DVQPIF 99
Cdd:PRK13547 17 LRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAGDLTgggaPRGarvtGDVTLNGEPLA---AIDAPRLARlrAVLPQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 100 QNPYESFSPRKAVDTYLYNTALKLGiaKNMEEAKQKADEALKSVGMSLAVvqGKYSAQFSGGELQRVSIARAL------- 172
Cdd:PRK13547 92 AQPAFAFSAREIVLLGRYPHARRAG--ALTHRDGEIAWQALALAGATALV--GRDVTTLSGGELARVQFARVLaqlwpph 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 173 --ITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDyPA 250
Cdd:PRK13547 168 daAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT-PA 246
|
.
gi 916601733 251 H 251
Cdd:PRK13547 247 H 247
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
9-239 |
3.58e-14 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 73.18 E-value: 3.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 9 VKGVSKVFriggmlrGKKmTAVDNVSLKIGK-DKpviLSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSysdKNGY- 86
Cdd:COG0488 1 LENLSKSF-------GGR-PLLDDVSLSINPgDR---IGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGL---RIGYl 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 --DPKQFklDVQPIFQNPYESFSPRKAVDTYLYNTALKLGIA-KNME---------------EAKQKADEALKSVGMSLA 148
Cdd:COG0488 67 pqEPPLD--DDLTVLDTVLDGDAELRALEAELEELEAKLAEPdEDLErlaelqeefealggwEAEARAEEILSGLGFPEE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 149 VVQGKYSaQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMkmnIVNLFKELKDkYNISFIYITHD---LSTayyVS 225
Cdd:COG0488 145 DLDRPVS-ELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLES---IEWLEEFLKN-YPGTVLVVSHDryfLDR---VA 216
|
250
....*....|....
gi 916601733 226 DYIATLYRGGLIEY 239
Cdd:COG0488 217 TRILELDRGKLTLY 230
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
32-225 |
3.63e-14 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 73.52 E-value: 3.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILN-GRSYSDKN-----------GYDPKQFKLDVQPIF 99
Cdd:PTZ00265 405 NFTLTEGK----TYAFVGESGCGKSTILKLIERLYDPTEGDIIINdSHNLKDINlkwwrskigvvSQDPLLFSNSIKNNI 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 100 QNPYESFSPRKAVDTYL------------------------YNTALKLGIAKNMEEAKQK----ADEALKSVGMSLAV-- 149
Cdd:PTZ00265 481 KYSLYSLKDLEALSNYYnedgndsqenknkrnscrakcagdLNDMSNTTDSNELIEMRKNyqtiKDSEVVDVSKKVLIhd 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 150 -----------VQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDL 218
Cdd:PTZ00265 561 fvsalpdkyetLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRL 640
|
....*..
gi 916601733 219 STAYYVS 225
Cdd:PTZ00265 641 STIRYAN 647
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
45-247 |
3.71e-14 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 70.77 E-value: 3.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 45 LSIVGESGCGKSTLCKMILKLHTPDGGDIILNGrsySDKNGYDPKQfkldvQPI---FQ--NPYESFSPRKavdtylyNT 119
Cdd:PRK10771 28 VAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG---QDHTTTPPSR-----RPVsmlFQenNLFSHLTVAQ-------NI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 120 ALKL--GIAKNMEEAKQKADEALKsvgMSLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIV 197
Cdd:PRK10771 93 GLGLnpGLKLNAAQREKLHAIARQ---MGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 916601733 198 NLFKELKDKYNISFIYITHDLSTAYyvsdYIAT---LYRGGLIEY-GPAKELMD 247
Cdd:PRK10771 170 TLVSQVCQERQLTLLMVSHSLEDAA----RIAPrslVVADGRIAWdGPTDELLS 219
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
8-219 |
3.78e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 72.04 E-value: 3.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 8 EVKGVSKVFRI-------GGMLRG------KKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIi 74
Cdd:COG4586 3 EVENLSKTYRVyekepglKGALKGlfrreyREVEAVDDISFTIEPGE--IVGFIGPNGAGKSTTIKMLTGILVPTSGEV- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 75 lngrsysDKNGYDP----KQFKLDVQPIFQN---------PYESFSPRKAVdtYlyntalklGIAKnmEEAKQKADE--A 139
Cdd:COG4586 80 -------RVLGYVPfkrrKEFARRIGVVFGQrsqlwwdlpAIDSFRLLKAI--Y--------RIPD--AEYKKRLDElvE 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 140 LKSVG---------MSLavvqgkysaqfsgGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNIS 210
Cdd:COG4586 141 LLDLGelldtpvrqLSL-------------GQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTT 207
|
....*....
gi 916601733 211 FIYITHDLS 219
Cdd:COG4586 208 ILLTSHDMD 216
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
29-246 |
4.05e-14 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 73.21 E-value: 4.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKPVILSI------------VGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSdknGYDPKQFKLDVQ 96
Cdd:PRK10790 342 DIDNVSFAYRDDNLVLQNInlsvpsrgfvalVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS---SLSHSVLRQGVA 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 97 PIFQNPYesfsprKAVDTYLYNTALKLGIAknmEEAKQKADEALKSVGMSLAVVQGKYSA------QFSGGELQRVSIAR 170
Cdd:PRK10790 419 MVQQDPV------VLADTFLANVTLGRDIS---EEQVWQALETVQLAELARSLPDGLYTPlgeqgnNLSVGQKQLLALAR 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 171 ALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKynISFIYITHDLSTAYYvSDYIATLYRGGLIEYGPAKELM 246
Cdd:PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLL 562
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
6-249 |
5.76e-14 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 70.95 E-value: 5.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSkvFRiggmlRGKKMTaVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR---SYSD 82
Cdd:PRK11831 7 LVDMRGVS--FT-----RGNRCI-FDNISLTVPRGK--ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEnipAMSR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 83 KNGYDPKQfKLDVqpIFQnpyesfSPRKAVDTYLYNTalklgIAKNMEEAKQKADEALKS-VGMSLAVVQGKYSAQF--- 158
Cdd:PRK11831 77 SRLYTVRK-RMSM--LFQ------SGALFTDMNVFDN-----VAYPLREHTQLPAPLLHStVMMKLEAVGLRGAAKLmps 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 159 --SGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGL 236
Cdd:PRK11831 143 elSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKI 222
|
250
....*....|...
gi 916601733 237 IEYGPAKELMDYP 249
Cdd:PRK11831 223 VAHGSAQALQANP 235
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
6-234 |
6.12e-14 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 70.81 E-value: 6.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRiggmlRGKKMTAVDnvsLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPD---GGDIILNGRSY-- 80
Cdd:PRK09984 4 IIRVEKLAKTFN-----QHQALHAVD---LNIHHGEMVAL--LGPSGSGKSTLLRHLSGLITGDksaGSHIELLGRTVqr 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 81 SDKNGYDPKQFKLDVQPIFQ--NPYESFSPRKAV------DTYLYNTALKLgiakNMEEAKQKADEALKSVGMSLAVVQg 152
Cdd:PRK09984 74 EGRLARDIRKSRANTGYIFQqfNLVNRLSVLENVligalgSTPFWRTCFSW----FTREQKQRALQALTRVGMVHFAHQ- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 153 kYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLY 232
Cdd:PRK09984 149 -RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR 227
|
..
gi 916601733 233 RG 234
Cdd:PRK09984 228 QG 229
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
7-246 |
7.83e-14 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 71.80 E-value: 7.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriGGMlrgkkmTAVDNVSLKIgkDKPVILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:PRK09536 4 IDVSDLSVEF--GDT------TVLDGVDLSV--REGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSAR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQ------------FKLDVQPIFQ---NPYES-FSPRKAVDTYLYNTALklgiakNMEEAKQKADEALKSVgmslavv 150
Cdd:PRK09536 74 AASRrvasvpqdtslsFEFDVRQVVEmgrTPHRSrFDTWTETDRAAVERAM------ERTGVAQFADRPVTSL------- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 151 qgkysaqfSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKD--KYNISFIyitHDLSTAYYVSDYI 228
Cdd:PRK09536 141 --------SGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDdgKTAVAAI---HDLDLAARYCDEL 209
|
250
....*....|....*...
gi 916601733 229 ATLYRGGLIEYGPAKELM 246
Cdd:PRK09536 210 VLLADGRVRAAGPPADVL 227
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
30-246 |
8.00e-14 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 72.09 E-value: 8.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKI-GKDKPV------------ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYS--DKN------GYDP 88
Cdd:COG4618 333 VENLTVVPpGSKRPIlrgvsfslepgeVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSqwDREelgrhiGYLP 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 89 kQfklDVQ----PIFQNpyesfsprkavdtylyntalklgIAKnMEEAK-QKADEALKSVG-----MSLAvvQGkY---- 154
Cdd:COG4618 413 -Q---DVElfdgTIAEN-----------------------IAR-FGDADpEKVVAAAKLAGvhemiLRLP--DG-Ydtri 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 155 ---SAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLStAYYVSDYIATL 231
Cdd:COG4618 462 gegGARLSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKAR-GATVVVITHRPS-LLAAVDKLLVL 539
|
250
....*....|....*
gi 916601733 232 YRGGLIEYGPAKELM 246
Cdd:COG4618 540 RDGRVQAFGPRDEVL 554
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
25-246 |
1.07e-13 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 69.54 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 25 KKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYS---------DKNGYDPKQfkldv 95
Cdd:PRK10895 14 KGRRVVEDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllplhararRGIGYLPQE----- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 96 QPIFQnpyesfspRKAVdtylYNTALK-LGIAKNM--EEAKQKADEALKSvgMSLAVVQGKYSAQFSGGELQRVSIARAL 172
Cdd:PRK10895 87 ASIFR--------RLSV----YDNLMAvLQIRDDLsaEQREDRANELMEE--FHIEHLRDSMGQSLSGGERRRVEIARAL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 173 ITRPKLIIADEPVAAIDASMKMNIVNLFKELKDkYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELM 246
Cdd:PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
30-253 |
1.53e-13 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 68.32 E-value: 1.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIgkDKPVILSIVGESGCGKSTLCKMILKLH--TPDGGDIILNGRSYSDKNGYDpkQFKLDVQPIFQNPYEsFS 107
Cdd:cd03217 16 LKGVNLTI--KKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGEDITDLPPEE--RARLGIFLAFQYPPE-IP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 108 prkavdtylyntalklGIaKNMEeakqkadeALKSVGMSlavvqgkysaqFSGGELQRVSIARALITRPKLIIADEPVAA 187
Cdd:cd03217 91 ----------------GV-KNAD--------FLRYVNEG-----------FSGGEKKRNEILQLLLLEPDLAILDEPDSG 134
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 188 IDA-SMKMnIVNLFKELKDKyNISFIYITHDLSTAYYV-SDYIATLYRGGLIEYGPAKELMDYPAHPY 253
Cdd:cd03217 135 LDIdALRL-VAEVINKLREE-GKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
6-234 |
1.68e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 70.97 E-value: 1.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYsdkNG 85
Cdd:PRK09700 5 YISMAGIGKSF--GPV------HALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINY---NK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPK-QFKLDVQPIFQ------------NPYESFSPRKAVdtylyntalkLGI-AKNMEEAKQKADEALKSVGmsLAVVQ 151
Cdd:PRK09700 72 LDHKlAAQLGIGIIYQelsvideltvleNLYIGRHLTKKV----------CGVnIIDWREMRVRAAMMLLRVG--LKVDL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 152 GKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKdKYNISFIYITHDLSTAYYVSDYIATL 231
Cdd:PRK09700 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR-KEGTAIVYISHKLAEIRRICDRYTVM 218
|
...
gi 916601733 232 YRG 234
Cdd:PRK09700 219 KDG 221
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
28-218 |
2.45e-13 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 67.64 E-value: 2.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 28 TAVDNVSLKIgkDKPVILSIVGESGCGKSTLCKMILKLHTPDGGDIIlngRSYSDKNGYDPKQFKLDvqpifqnpyESFs 107
Cdd:NF040873 6 PVLHGVDLTI--PAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVR---RAGGARVAYVPQRSEVP---------DSL- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 108 PRKAVDTYLYNTALKLGIAKNME-EAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVA 186
Cdd:NF040873 71 PLTVRDLVAMGRWARRGLWRRLTrDDRAAVDDALERVG--LADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTT 148
|
170 180 190
....*....|....*....|....*....|..
gi 916601733 187 AIDASMKMNIVNLFKELKDKyNISFIYITHDL 218
Cdd:NF040873 149 GLDAESRERIIALLAEEHAR-GATVVVVTHDL 179
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
8-216 |
4.44e-13 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 67.68 E-value: 4.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 8 EVKGVSKVFRIGgmLRGKKMTAVDNVSLKIgKDKPVILsIVGESGCGKSTLCKMILKLHtpdggdiilngrsysdKNGYD 87
Cdd:COG2401 26 RVAIVLEAFGVE--LRVVERYVLRDLNLEI-EPGEIVL-IVGASGSGKSTLLRLLAGAL----------------KGTPV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 88 PKQFKLDVQPIFQNP--YESFSPRKAVDTylyntalklgiaknmeeakqkADEALKSVGMSLAVVQGKYSAQFSGGELQR 165
Cdd:COG2401 86 AGCVDVPDNQFGREAslIDAIGRKGDFKD---------------------AVELLNAVGLSDAVLWLRRFKELSTGQKFR 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 916601733 166 VSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITH 216
Cdd:COG2401 145 FRLALLLAERPKLLVIDEFCSHLDRQTAKRVARNLQKLARRAGITLVVATH 195
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
44-226 |
5.80e-13 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 67.43 E-value: 5.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSdkngYDPKQFKLDvqpifqnpYESfsprkAVDTYLYntalkl 123
Cdd:cd03237 27 VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS----YKPQYIKAD--------YEG-----TVRDLLS------ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 124 GIAKNMEEAKQKADEALKSVGMslavvQGKYSAQ---FSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLF 200
Cdd:cd03237 84 SITKDFYTHPYFKTEIAKPLQI-----EQILDREvpeLSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158
|
170 180
....*....|....*....|....*.
gi 916601733 201 KELKDKYNISFIYITHDLSTAYYVSD 226
Cdd:cd03237 159 RRFAENNEKTAFVVEHDIIMIDYLAD 184
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
24-246 |
8.68e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 67.32 E-value: 8.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 24 GKKMTAVD-NVSLKIGKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngYDPKQFKLDVQPIFQNP 102
Cdd:PRK10253 18 GKYTVAENlTVEIPDGH----FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQH---YASKEVARRIGLLAQNA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 103 YE--SFSPRKAVDTYLY-NTALKLGIAKNMEEAKQKAdeaLKSVGMSLAVVQGKYSaqFSGGELQRVSIARALITRPKLI 179
Cdd:PRK10253 91 TTpgDITVQELVARGRYpHQPLFTRWRKEDEEAVTKA---MQATGITHLADQSVDT--LSGGQRQRAWIAMVLAQETAIM 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 916601733 180 IADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELM 246
Cdd:PRK10253 166 LLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
29-250 |
8.77e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 67.70 E-value: 8.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYdPKQFKLdVQPIFQNPYESFSP 108
Cdd:PRK13644 17 ALENINLVIKKGE--YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKL-QGIRKL-VGIVFQNPETQFVG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 109 RKAVDTylyntaLKLGiAKNM----EEAKQKADEALKSVGMslavvqGKYSAQ----FSGGELQRVSIARALITRPKLII 180
Cdd:PRK13644 93 RTVEED------LAFG-PENLclppIEIRKRVDRALAEIGL------EKYRHRspktLSGGQGQCVALAGILTMEPECLI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 181 ADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLStAYYVSDYIATLYRGGLIEYGPAKELMDYPA 250
Cdd:PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLE-ELHDADRIIVMDRGKIVLEGEPENVLSDVS 227
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
6-234 |
1.20e-12 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 68.51 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSkvfriggmLRGKkmtaVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysdkng 85
Cdd:COG1129 256 VLEVEGLS--------VGGV----VRDVSFSVRAGE--ILGIAGLVGAGRTELARALFGADPADSGEIRLDGK------- 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 ydpkqfkldvqpifqnPYESFSPRKAVD---TYLynT--------ALKLGIAKNM----------------EEAKQKADE 138
Cdd:COG1129 315 ----------------PVRIRSPRDAIRagiAYV--PedrkgeglVLDLSIRENItlasldrlsrgglldrRRERALAEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 139 ALKSV-----GMSLAVvqgkysAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIY 213
Cdd:COG1129 377 YIKRLriktpSPEQPV------GNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIV 449
|
250 260
....*....|....*....|.
gi 916601733 214 ITHDLSTAYYVSDYIATLYRG 234
Cdd:COG1129 450 ISSELPELLGLSDRILVMREG 470
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
6-245 |
3.35e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 66.95 E-value: 3.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRiggmlrGKKmtAVDNVSLKI--GKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDK 83
Cdd:PRK10762 4 LLQLKGIDKAFP------GVK--ALSGAALNVypGR----VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFN 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 84 NGYDPKQFKLDVqpIFQNpyesfsprkavdtylYNTALKLGIAKNM---------------EEAKQKADEALKSVGMsla 148
Cdd:PRK10762 72 GPKSSQEAGIGI--IHQE---------------LNLIPQLTIAENIflgrefvnrfgridwKKMYAEADKLLARLNL--- 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 149 vvqgKYSAQ-----FSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYY 223
Cdd:PRK10762 132 ----RFSSDklvgeLSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFE 206
|
250 260
....*....|....*....|..
gi 916601733 224 VSDYIATLYRGGLIEYGPAKEL 245
Cdd:PRK10762 207 ICDDVTVFRDGQFIAEREVADL 228
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
6-247 |
4.72e-12 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 64.62 E-value: 4.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSkVFrIGgmlrgkKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysdkng 85
Cdd:COG0410 3 MLEVENLH-AG-YG------GIHVLHGVSLEVEEGE--IVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGE------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 ydpkqfklDVQPIfqnpyesfSPRKAVdtylyntalKLGIA---------KNM--EE-----AKQKADEAlkSVGMSLAV 149
Cdd:COG0410 66 --------DITGL--------PPHRIA---------RLGIGyvpegrrifPSLtvEEnlllgAYARRDRA--EVRADLER 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 150 V----------QGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLS 219
Cdd:COG0410 119 VyelfprlkerRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNAR 197
|
250 260
....*....|....*....|....*...
gi 916601733 220 TAYYVSDYIATLYRGGLIEYGPAKELMD 247
Cdd:COG0410 198 FALEIADRAYVLERGRIVLEGTAAELLA 225
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
29-240 |
4.76e-12 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 64.36 E-value: 4.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNGYDPKQFKLDVQPIFQNPyesfsp 108
Cdd:cd03369 23 VLKNVSFKVKAGEKI--GIVGRTGAGKSTLILALFRFLEAEEGKIEIDGI---DISTIPLEDLRSSLTIIPQDP------ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 109 rkavdTYLYNTalklgIAKNMEEAKQKADEALKSvgmSLAVVQGkySAQFSGGELQRVSIARALITRPKLIIADEPVAAI 188
Cdd:cd03369 92 -----TLFSGT-----IRSNLDPFDEYSDEEIYG---ALRVSEG--GLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 916601733 189 DASMKMNIVNLFKELKDKYNIsfIYITHDLSTayyVSDY--IATLYRGGLIEYG 240
Cdd:cd03369 157 DYATDALIQKTIREEFTNSTI--LTIAHRLRT---IIDYdkILVMDAGEVKEYD 205
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
7-235 |
6.44e-12 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 66.09 E-value: 6.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRiggmlrGKKmtAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:PRK11288 5 LSFDGIGKTFP------GVK--ALDDISFDCRAGQ--VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTT 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DpkQFKLDVQPIFQNPYesFSPRKAVDTYLYNTAL--KLGIAkNMEEAKQKADEALKSVGMSL-AVVQGKYsaqFSGGEL 163
Cdd:PRK11288 75 A--ALAAGVAIIYQELH--LVPEMTVAENLYLGQLphKGGIV-NRRLLNYEAREQLEHLGVDIdPDTPLKY---LSIGQR 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 164 QRVSIARALITRPKLIIADEPVAAIDASmkmNIVNLFK---ELKDKYNIsFIYITHDLSTAYYVSDYIaTLYRGG 235
Cdd:PRK11288 147 QMVEIAKALARNARVIAFDEPTSSLSAR---EIEQLFRvirELRAEGRV-ILYVSHRMEEIFALCDAI-TVFKDG 216
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
29-241 |
8.78e-12 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 63.67 E-value: 8.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKI-GKDKpviLSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNGYDPKQF--KLDVQPifQNPYeS 105
Cdd:cd03244 19 VLKNISFSIkPGEK---VGIVGRTGSGKSSLLLALFRLVELSSGSILIDGV---DISKIGLHDLrsRISIIP--QDPV-L 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 106 FSprkavDTylyntalklgIAKNMEEAKQKADE----ALKSVGMSLAVVQGKYS---------AQFSGGELQRVSIARAL 172
Cdd:cd03244 90 FS-----GT----------IRSNLDPFGEYSDEelwqALERVGLKEFVESLPGGldtvveeggENLSVGQRQLLCLARAL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 916601733 173 ITRPKLIIADEPVAAIDASMKMNIVN-LFKELKDKyniSFIYITHDLSTayyVSDY--IATLYRGGLIEYGP 241
Cdd:cd03244 155 LRKSKILVLDEATASVDPETDALIQKtIREAFKDC---TVLTIAHRLDT---IIDSdrILVLDKGRVVEFDS 220
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
6-245 |
1.05e-11 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 65.43 E-value: 1.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSkvfriggMLRGKKMTAVDNVSLKI--GKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDK 83
Cdd:COG3845 257 VLEVENLS-------VRDDRGVPALKDVSLEVraGE----ILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 84 ngyDPKQF-KLDV---------------QPIFQNpyesfsprkAVDTYLYNTALKLGIAKNMEEAKQKADEAL-----KS 142
Cdd:COG3845 326 ---SPRERrRLGVayipedrlgrglvpdMSVAEN---------LILGRYRRPPFSRGGFLDRKAIRAFAEELIeefdvRT 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 143 VGMSLAVvqgkysAQFSGGELQRVSIARALITRPKLIIADEP-----VAAIDAsmkmnIVNLFKELKDKyNISFIYITHD 217
Cdd:COG3845 394 PGPDTPA------RSLSGGNQQKVILARELSRDPKLLIAAQPtrgldVGAIEF-----IHQRLLELRDA-GAAVLLISED 461
|
250 260
....*....|....*....|....*...
gi 916601733 218 LSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:COG3845 462 LDEILALSDRIAVMYEGRIVGEVPAAEA 489
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-248 |
1.08e-11 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 63.95 E-value: 1.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANdyLLEVKGVSKVFRIG--------------GMLRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLH 66
Cdd:COG1134 1 MSS--MIEVENVSKSYRLYhepsrslkelllrrRRTRREEFWALKDVSFEVERGE--SVGIIGRNGAGKSTLLKLIAGIL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 67 TPDGGDIILNGRSysdkngydpkQFKLDVQPIFQNpyeSFSPRKAVdtYLYntALKLGIAKnmEEAKQKADEalksvgms 146
Cdd:COG1134 77 EPTSGRVEVNGRV----------SALLELGAGFHP---ELTGRENI--YLN--GRLLGLSR--KEIDEKFDE-------- 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 147 laVVQ----GKYSAQ----FSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDL 218
Cdd:COG1134 130 --IVEfaelGDFIDQpvktYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRES-GRTVIFVSHSM 206
|
250 260 270
....*....|....*....|....*....|
gi 916601733 219 STAYYVSDYIATLYRGGLIEYGPAKELMDY 248
Cdd:COG1134 207 GAVRRLCDRAIWLEKGRLVMDGDPEEVIAA 236
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
32-248 |
1.19e-11 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 65.45 E-value: 1.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSlkiGKDKP-VILSIVGESGCGKSTLCKMILKLHTPD---GGDIILNGRSYsdkngyDPKQFKLDVQPIFQNpyESFS 107
Cdd:TIGR00955 43 NVS---GVAKPgELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPI------DAKEMRAISAYVQQD--DLFI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 108 PRKAVDTYLYNTA-LKLGIAKNMEEAKQKADEALKSVGMSLA----VVQGKYSAQFSGGELQRVSIARALITRPKLIIAD 182
Cdd:TIGR00955 112 PTLTVREHLMFQAhLRMPRRVTKKEKRERVDEVLQALGLRKCantrIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 183 EPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDY 248
Cdd:TIGR00955 192 EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPF 257
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
7-247 |
1.20e-11 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 64.85 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRiggmlrGKkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNgy 86
Cdd:PRK13536 42 IDLAGVSKSYG------DK--AVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 DPKQFKLDVQPIFQNPYESFSPRKAVDTYlyntalklGIAKNMeeaKQKADEALKSVGMSLAVVQGKYS---AQFSGGEL 163
Cdd:PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVF--------GRYFGM---STREIEAVIPSLLEFARLESKADarvSDLSGGMK 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 164 QRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAK 243
Cdd:PRK13536 179 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPH 257
|
....
gi 916601733 244 ELMD 247
Cdd:PRK13536 258 ALID 261
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
6-247 |
1.26e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 65.46 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRIGGMLRGkkmtaVDnVSLKIGKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNG 85
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKG-----ID-FTLHAGE----VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 YDPKQFKLDVQPifQNPYesFSPRKAVdtyLYNTAlkLGIAKNmEEAKQKADEALKSVGMSLavvqgKYSAQFSGGEL-- 163
Cdd:PRK15439 81 AKAHQLGIYLVP--QEPL--LFPNLSV---KENIL--FGLPKR-QASMQKMKQLLAALGCQL-----DLDSSAGSLEVad 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 164 -QRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPA 242
Cdd:PRK15439 146 rQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKT 224
|
....*
gi 916601733 243 KELMD 247
Cdd:PRK15439 225 ADLST 229
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
44-232 |
1.47e-11 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 63.54 E-value: 1.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKmIL---------KLHTPDGGDIILNGRSYSDKNGYDPKQFKLDVQPIFQNPYESFSPrKAVDT 114
Cdd:cd03236 28 VLGLVGPNGIGKSTALK-ILagklkpnlgKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIP-KAVKG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 115 ylyntalKLGIAKNMEEAKQKADEALKSvgMSLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKM 194
Cdd:cd03236 106 -------KVGELLKKKDERGKLDELVDQ--LELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176
|
170 180 190
....*....|....*....|....*....|....*...
gi 916601733 195 NIVNLFKELKDKYNiSFIYITHDLSTAYYVSDYIATLY 232
Cdd:cd03236 177 NAARLIRELAEDDN-YVLVVEHDLAVLDYLSDYIHCLY 213
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
29-216 |
3.51e-11 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 61.02 E-value: 3.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKPVI------------LSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSysdkngydpkqfkldvq 96
Cdd:cd03223 2 ELENLSLATPDGRVLLkdlsfeikpgdrLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGE----------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 97 PIFqnpyesFSPRKavdTYLYNTALKlgiaknmeeakqkadEALKsvgmslavvqgkY--SAQFSGGELQRVSIARALIT 174
Cdd:cd03223 65 DLL------FLPQR---PYLPLGTLR---------------EQLI------------YpwDDVLSGGEQQRLAFARLLLH 108
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 916601733 175 RPKLIIADEPVAAIDASMKMNIVNLFKELKdkynISFIYITH 216
Cdd:cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKELG----ITVISVGH 146
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
7-240 |
4.04e-11 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 61.78 E-value: 4.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRIGGMLRGKKMT--------------AVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGD 72
Cdd:cd03220 1 IELENVSKSYPTYKGGSSSLKKlgilgrkgevgefwALKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIYPPDSGT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 73 IILNGRSYSdkngydpkqfKLDVQPIFQNpyeSFSPRKAVdtYLYntALKLGIAKnmEEAKQKADE--ALKSVG--MSLA 148
Cdd:cd03220 79 VTVRGRVSS----------LLGLGGGFNP---ELTGRENI--YLN--GRLLGLSR--KEIDEKIDEiiEFSELGdfIDLP 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 149 VvqGKYSAqfsgGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNIsFIYITHDLSTAYYVSDYI 228
Cdd:cd03220 140 V--KTYSS----GMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKT-VILVSHDPSSIKRLCDRA 212
|
250
....*....|..
gi 916601733 229 ATLYRGGLIEYG 240
Cdd:cd03220 213 LVLEKGKIRFDG 224
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
7-217 |
6.13e-11 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 59.77 E-value: 6.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrGKKmTAVDNVSLKIGK-DKpviLSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysdkng 85
Cdd:cd03221 1 IELENLSKTY-------GGK-LLLKDISLTINPgDR---IGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 86 ydpkqfkldvqpifqnpyesfsprkavdtylyntaLKLGiaknmeeakqkadealksvgmslavvqgkYSAQFSGGELQR 165
Cdd:cd03221 63 -----------------------------------VKIG-----------------------------YFEQLSGGEKMR 78
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 916601733 166 VSIARALITRPKLIIADEP-----VAAIDAsmkmnIVNLFKElkdkYNISFIYITHD 217
Cdd:cd03221 79 LALAKLLLENPNLLLLDEPtnhldLESIEA-----LEEALKE----YPGTVILVSHD 126
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
46-220 |
6.95e-11 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 63.51 E-value: 6.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 46 SIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFKLDVQPIFQNPYESFSPRK--------------- 110
Cdd:PTZ00265 1198 AIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKeggsgedstvfknsg 1277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 111 -----AVDTYLYNTA---------------LKLGIAKNMEEAKQKA--------------DEALKSVGMSLAVVQGKYSA 156
Cdd:PTZ00265 1278 killdGVDICDYNLKdlrnlfsivsqepmlFNMSIYENIKFGKEDAtredvkrackfaaiDEFIESLPNKYDTNVGPYGK 1357
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 157 QFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNISFIYITHDLST 220
Cdd:PTZ00265 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS 1421
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
26-257 |
8.95e-11 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 62.67 E-value: 8.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 26 KMTAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGrsySDKNGYDPKQFKLDVQPIFQnpyes 105
Cdd:PRK13657 347 SRQGVEDVSFEAKPGQTV--AIVGPTGAGKSTLINLLQRVFDPQSGRILIDG---TDIRTVTRASLRRNIAVVFQ----- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 106 fsprkavDTYLYNTA----LKLGI--AKNME-----EAKQKADEALKSVGMSLAVVqGKYSAQFSGGELQRVSIARALIT 174
Cdd:PRK13657 417 -------DAGLFNRSiednIRVGRpdATDEEmraaaERAQAHDFIERKPDGYDTVV-GERGRQLSGGERQRLAIARALLK 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 175 RPKLIIADEPVAAIDASMKMNIVNLFKELKdKYNISFIyITHDLSTAYYvSDYIATLYRGGLIEYGPAKELMDYPAHpYT 254
Cdd:PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELM-KGRTTFI-IAHRLSTVRN-ADRILVFDNGRVVESGSFDELVARGGR-FA 564
|
...
gi 916601733 255 ELL 257
Cdd:PRK13657 565 ALL 567
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
31-246 |
1.21e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 62.53 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 31 DNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysdkngydpkqfklDVQPIFQNpyesfSPRK 110
Cdd:COG5265 375 KGVSFEVPAGKTV--AIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQ---------------DIRDVTQA-----SLRA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 111 AV-----DTYLYNTALKLGIA-----KNMEEAKQKADEA-LKSVGMSLAvvQGkYSAQ-------FSGGELQRVSIARAL 172
Cdd:COG5265 433 AIgivpqDTVLFNDTIAYNIAygrpdASEEEVEAAARAAqIHDFIESLP--DG-YDTRvgerglkLSGGEKQRVAIARTL 509
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 916601733 173 ITRPKLIIADEPVAAIDASMKMNIVNLFKEL-KDKYNISfiyITHDLSTayyV--SDYIATLYRGGLIEYGPAKELM 246
Cdd:COG5265 510 LKNPPILIFDEATSALDSRTERAIQAALREVaRGRTTLV---IAHRLST---IvdADEILVLEAGRIVERGTHAELL 580
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
44-229 |
1.71e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 62.11 E-value: 1.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR-SYsdKNGYDPKQFKLDVQPIFQNPYESfsprkAVDTYLYNTAL- 121
Cdd:COG1245 368 VLGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLKiSY--KPQYISPDYDGTVEEFLRSANTD-----DFGSSYYKTEIi 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 122 -KLGIAKNMEeakqkadealksvgmslavvqgKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLF 200
Cdd:COG1245 441 kPLGLEKLLD----------------------KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAI 498
|
170 180
....*....|....*....|....*....
gi 916601733 201 KELKDKYNISFIYITHDLstayYVSDYIA 229
Cdd:COG1245 499 RRFAENRGKTAMVVDHDI----YLIDYIS 523
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
6-184 |
1.82e-10 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 61.62 E-value: 1.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFriggmlrGKKmTAVDNVSLKIGK-DKpviLSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR---SYs 81
Cdd:COG0488 315 VLELEGLSKSY-------GDK-TLLDDLSLRIDRgDR---IGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGETvkiGY- 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 82 dkngYDPKQFKLDVQpifQNPYESFSprkavdtylyntalklGIAKNMEEAKQKA---------DEALKSVGmslavvqg 152
Cdd:COG0488 383 ----FDQHQEELDPD---KTVLDELR----------------DGAPGGTEQEVRGylgrflfsgDDAFKPVG-------- 431
|
170 180 190
....*....|....*....|....*....|..
gi 916601733 153 kysaQFSGGELQRVSIARALITRPKLIIADEP 184
Cdd:COG0488 432 ----VLSGGEKARLALAKLLLSPPNVLLLDEP 459
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
29-216 |
1.84e-10 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 61.75 E-value: 1.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKPVI------------LSIVGESGCGKSTLCKMI--L------KLHTPDGGDIIlngrsysdkngydp 88
Cdd:COG4178 364 ALEDLTLRTPDGRPLLedlslslkpgerLLITGPSGSGKSTLLRAIagLwpygsgRIARPAGARVL-------------- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 89 kqfkldvqpiF--QNPYesfsprkavdtylyntaLKLG----------IAKNMEEAKqkADEALKSVGMS-----LAVVQ 151
Cdd:COG4178 430 ----------FlpQRPY-----------------LPLGtlreallypaTAEAFSDAE--LREALEAVGLGhlaerLDEEA 480
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 152 gKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASmkmNIVNLFKELKDKY-NISFIYITH 216
Cdd:COG4178 481 -DWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEE---NEAALYQLLREELpGTTVISVGH 542
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-245 |
4.12e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 59.27 E-value: 4.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANDYLLEVKGVSKVFRIGGMLRGkkmtavdnVSLKIGKDKpvILSIVGESGCGKSTLCKmILKLHtPD----GGDIILN 76
Cdd:CHL00131 2 NKNKPILEIKNLHASVNENEILKG--------LNLSINKGE--IHAIMGPNGSGKSTLSK-VIAGH-PAykilEGDILFK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 77 GRSYSDKngyDPKQ-FKLDVQPIFQNPYESfsPRKAVDTYL---YNTALKlgiAKNMEEAK-----QKADEALKSVGMSL 147
Cdd:CHL00131 70 GESILDL---EPEErAHLGIFLAFQYPIEI--PGVSNADFLrlaYNSKRK---FQGLPELDpleflEIINEKLKLVGMDP 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 148 AVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKYNiSFIYITH-----DlstaY 222
Cdd:CHL00131 142 SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN-SIILITHyqrllD----Y 216
|
250 260
....*....|....*....|....*.
gi 916601733 223 YVSDYIATLYRGGLIEYGP---AKEL 245
Cdd:CHL00131 217 IKPDYVHVMQNGKIIKTGDaelAKEL 242
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
44-243 |
4.18e-10 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 59.51 E-value: 4.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSD---KN--GYDPKQFKLDVqpifqnpyeSFsPRKAVDTYLYN 118
Cdd:PRK15056 35 IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQalqKNlvAYVPQSEEVDW---------SF-PVLVEDVVMMG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 119 TALKLG-IAKNMEEAKQKADEALKSVGMSlaVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIV 197
Cdd:PRK15056 105 RYGHMGwLRRAKKRDRQIVTAALARVDMV--EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARII 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 916601733 198 NLFKELKDKyNISFIYITHDLSTAYYVSDYiATLYRGGLIEYGPAK 243
Cdd:PRK15056 183 SLLRELRDE-GKTMLVSTHNLGSVTEFCDY-TVMVKGTVLASGPTE 226
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
7-247 |
4.75e-10 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 59.82 E-value: 4.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFriggmlrGKKmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGY 86
Cdd:PRK13537 8 IDFRNVEKRY-------GDK-LVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 87 dpKQFKLDVQPIFQNPYESFSPRKAVDTY-----LYNTALKLGIAKNMEEAK--QKADEALKsvgmslavvqgkysaQFS 159
Cdd:PRK13537 78 --ARQRVGVVPQFDNLDPDFTVRENLLVFgryfgLSAAAARALVPPLLEFAKleNKADAKVG---------------ELS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 160 GGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEY 239
Cdd:PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAE 219
|
....*...
gi 916601733 240 GPAKELMD 247
Cdd:PRK13537 220 GAPHALIE 227
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
22-238 |
7.88e-10 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 59.80 E-value: 7.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 22 LRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDpkQFKLDVQPIFQN 101
Cdd:PRK09700 271 VTSRDRKKVRDISFSVCRGE--ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLD--AVKKGMAYITES 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 102 PYES-----FSPRK--AVDTYLYNTALK--LGIAKNMEEAK----QKADEALKSVGMSLAVvqgkysAQFSGGELQRVSI 168
Cdd:PRK09700 347 RRDNgffpnFSIAQnmAISRSLKDGGYKgaMGLFHEVDEQRtaenQRELLALKCHSVNQNI------TELSGGNQQKVLI 420
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 169 ARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIE 238
Cdd:PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
44-246 |
1.42e-09 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 57.64 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLhTPDGGDIILNGRSYSDKNGYDPKQFK--LDVQ--PIFQNPyesfsprkaVDTYLynt 119
Cdd:PRK03695 24 ILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRayLSQQqtPPFAMP---------VFQYL--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 120 ALKLGiAKNMEEAKQKA-DEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALI-----TRP--KLIIADEPVAAIDAS 191
Cdd:PRK03695 91 TLHQP-DKTRTEAVASAlNEVAEALG--LDDKLGRSVNQLSGGEWQRVRLAAVVLqvwpdINPagQLLLLDEPMNSLDVA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 192 MKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELM 246
Cdd:PRK03695 168 QQAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
9-236 |
1.68e-09 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 59.26 E-value: 1.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 9 VKGVSKVFRIGGMlrgkkmTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYsdkngydp 88
Cdd:TIGR01257 931 VKNLVKIFEPSGR------PAVDRLNITFYENQ--ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-------- 994
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 89 kQFKLDV--QPIFQNPYES--FSPRKAVDTYLYNTALKlgiAKNMEEAKQKADEALKSVGMSLAvvQGKYSAQFSGGELQ 164
Cdd:TIGR01257 995 -ETNLDAvrQSLGMCPQHNilFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHK--RNEEAQDLSGGMQR 1068
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 916601733 165 RVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFkeLKDKYNISFIYITHDLSTAYYVSDYIATLYRGGL 236
Cdd:TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
44-191 |
1.79e-09 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 56.73 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDkngydpkqfkldVQPIFQNP--YESFSPR-KAVDTYLYNta 120
Cdd:cd03231 28 ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDF------------QRDSIARGllYLGHAPGiKTTLSVLEN-- 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 916601733 121 LKLGIAKNMEEAkqkADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDAS 191
Cdd:cd03231 94 LRFWHADHSDEQ---VEEALARVG--LNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
44-248 |
2.72e-09 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 58.35 E-value: 2.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMIL-KLHTPD-GGDIILNGRSYSdkngydpKQFKLDVQPIFQNP--YESFSPRkavDTYLYNT 119
Cdd:PLN03211 96 ILAVLGPSGSGKSTLLNALAgRIQGNNfTGTILANNRKPT-------KQILKRTGFVTQDDilYPHLTVR---ETLVFCS 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 120 ALKLGIAKNMEEAKQKADEALKSVGMSL---AVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNI 196
Cdd:PLN03211 166 LLRLPKSLTKQEKILVAESVISELGLTKcenTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRL 245
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 916601733 197 VNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDY 248
Cdd:PLN03211 246 VLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAY 297
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
45-262 |
3.71e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 58.06 E-value: 3.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 45 LSIVGESGCGKSTLCKMILKLHTPDGGDIILNGrsysdkngYDPKQFKL-DVQPIF----QNPYE-SFSPRKAVDTYL-Y 117
Cdd:PLN03232 1265 VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDD--------CDVAKFGLtDLRRVLsiipQSPVLfSGTVRFNIDPFSeH 1336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 118 NTAlklGIAKNMEEAKQKADEALKSVGMSLAVVQGKYSaqFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIV 197
Cdd:PLN03232 1337 NDA---DLWEALERAHIKDVIDRNPFGLDAEVSEGGEN--FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ 1411
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 198 NLFKElkDKYNISFIYITHDLSTAYYVsDYIATLYRGGLIEYGPAKELMDYPAHPYTELLMEAVP 262
Cdd:PLN03232 1412 RTIRE--EFKSCTMLVIAHRLNTIIDC-DKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
44-247 |
5.33e-09 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 56.00 E-value: 5.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLhTPDGGDIILNGRSYSDkngYDPKQfkLDVQ--------------PIFQnpYESFS-P 108
Cdd:COG4138 24 LIHLIGPNGAGKSTLLARMAGL-LPGQGEILLNGRPLSD---WSAAE--LARHraylsqqqsppfamPVFQ--YLALHqP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 109 RKAVDTYLYNTALKLGiaknmeEAKQKADEALKSVGmslavvqgkysaQFSGGELQRVSIARALIT-------RPKLIIA 181
Cdd:COG4138 96 AGASSEAVEQLLAQLA------EALGLEDKLSRPLT------------QLSGGEWQRVRLAAVLLQvwptinpEGQLLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 182 DEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMD 247
Cdd:COG4138 158 DEPMNSLDVAQQAALDRLLRELCQQ-GITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMT 222
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
29-247 |
7.81e-09 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 56.66 E-value: 7.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIgkdKP-VILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDP---------KQFKLDVQ-P 97
Cdd:PRK10982 13 ALDNVNLKV---RPhSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEAlengismvhQELNLVLQrS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 98 IFQNPYESFSPRKA--VDTylyntalklgiAKNMEEAKQKADEalksvgMSLAVVQGKYSAQFSGGELQRVSIARALITR 175
Cdd:PRK10982 90 VMDNMWLGRYPTKGmfVDQ-----------DKMYRDTKAIFDE------LDIDIDPRAKVATLSVSQMQMIEIAKAFSYN 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 916601733 176 PKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL-MD 247
Cdd:PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLtMD 224
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
32-241 |
9.26e-09 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 54.25 E-value: 9.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKDkpVILSIVGESGCGKSTLCKMILKlhtpdggdiilngrsysdKNGydpkqfkldvqpifQNPYESFSPrka 111
Cdd:cd03238 13 NLDVSIPLN--VLVVVTGVSGSGKSTLVNEGLY------------------ASG--------------KARLISFLP--- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 112 vdTYLYNTALKLGIAKNMeeakqkadealksVGMSLAVVQ-GKYSAQFSGGELQRVSIARALITRPK--LIIADEPVAAI 188
Cdd:cd03238 56 --KFSRNKLIFIDQLQFL-------------IDVGLGYLTlGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGL 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 916601733 189 DASMKMNIVNLFKELKDKYNiSFIYITHDLSTAYYvSDYIatlyrgglIEYGP 241
Cdd:cd03238 121 HQQDINQLLEVIKGLIDLGN-TVILIEHNLDVLSS-ADWI--------IDFGP 163
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
159-271 |
9.68e-09 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 56.55 E-value: 9.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 159 SGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKdKYNISFIYITHDLSTAYYVSDYIATLYRGGLIE 238
Cdd:PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK-AEGLSIILVSSEMPEVLGMSDRILVMHEGRISG 475
|
90 100 110
....*....|....*....|....*....|...
gi 916601733 239 YGPAKELMDypahpytELLMEAVprVGDKWNQE 271
Cdd:PRK10762 476 EFTREQATQ-------EKLMAAA--VGKLNRVN 499
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
26-240 |
1.21e-08 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 54.19 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 26 KMTAVDNVSLKIgKDKPVILsIVGESGCGKSTLCKMILKLHTPDG---GDIilngrSYsdkNGYDPKQFKldvqpifqNP 102
Cdd:cd03233 19 KIPILKDFSGVV-KPGEMVL-VLGRPGSGCSTLLKALANRTEGNVsveGDI-----HY---NGIPYKEFA--------EK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 103 YESfsprkavdTYLYNTALKLGIAkNMEeAKQKADEALKSVGMslAVVQGkysaqFSGGELQRVSIARALITRPKLIIAD 182
Cdd:cd03233 81 YPG--------EIIYVSEEDVHFP-TLT-VRETLDFALRCKGN--EFVRG-----ISGGERKRVSIAEALVSRASVLCWD 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 183 EPVAAIDASMKMNIVNLFKELKDKYNIS-FIYITHDLSTAYYVSDYIATLYRGGLIEYG 240
Cdd:cd03233 144 NSTRGLDSSTALEILKCIRTMADVLKTTtFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
32-249 |
1.31e-08 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 56.26 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKdkpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNgYDPKQFKLDVqpIFQNPYeSFSprka 111
Cdd:PRK10789 335 NFTLKPGQ----MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ-LDSWRSRLAV--VSQTPF-LFS---- 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 112 vDTYLYNTALKLGIA--KNMEEAKQKA---DEALK-SVGMSLAVvqGKYSAQFSGGELQRVSIARALITRPKLIIADEPV 185
Cdd:PRK10789 403 -DTVANNIALGRPDAtqQEIEHVARLAsvhDDILRlPQGYDTEV--GERGVMLSGGQKQRISIARALLLNAEILILDDAL 479
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 186 AAIDASMKMNIVNLFKELKDKYNIsfIYITHDLStAYYVSDYIATLYRGGLIEYGPAKELMDYP 249
Cdd:PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTV--IISAHRLS-ALTEASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
32-232 |
1.36e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 53.73 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKDKPVIlSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSdkngYDPKQFKLdvqpifqnpyesfsprka 111
Cdd:cd03222 16 LVELGVVKEGEVI-GIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV----YKPQYIDL------------------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 112 vdtylyntalklgiaknmeeakqkadealksvgmslavvqgkysaqfSGGELQRVSIARALITRPKLIIADEPVAAIDAS 191
Cdd:cd03222 73 -----------------------------------------------SGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 916601733 192 MKMNIVNLFKELKDKYNISFIYITHDLSTAYYVSDYIATLY 232
Cdd:cd03222 106 QRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
41-248 |
1.39e-08 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 56.27 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 41 KPVILSIV-GESGCGKSTLCKMILKlhTPDGGDIILNGR-SYsdkNGYDP----KQFKLDVQPIFQNpyESFSPRKAV-D 113
Cdd:TIGR00956 85 KPGELTVVlGRPGSGCSTLLKTIAS--NTDGFHIGVEGViTY---DGITPeeikKHYRGDVVYNAET--DVHFPHLTVgE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 114 TYLYNTALK------LGIAKNmEEAKQKADEALKSVGMSL---AVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEP 184
Cdd:TIGR00956 158 TLDFAARCKtpqnrpDGVSRE-EYAKHIADVYMATYGLSHtrnTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNA 236
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 185 VAAIDASMKMNIVNLFKELKDKYN-ISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKELMDY 248
Cdd:TIGR00956 237 TRGLDSATALEFIRALKTSANILDtTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQY 301
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
159-232 |
3.06e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 54.79 E-value: 3.06e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 159 SGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLY 232
Cdd:COG1245 214 SGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEE-GKYVLVVEHDLAILDYLADYVHILY 286
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
44-229 |
3.47e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 54.81 E-value: 3.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIilngrSYSDKNGYDPkQFkldVQPIFQNPYESF--SPRKAVDTYLYNTAL 121
Cdd:PRK13409 367 VIGIVGPNGIGKTTFAKLLAGVLKPDEGEV-----DPELKISYKP-QY---IKPDYDGTVEDLlrSITDDLGSSYYKSEI 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 122 --KLGIAKNMEeakqkadealksvgmslavvqgKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNL 199
Cdd:PRK13409 438 ikPLQLERLLD----------------------KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKA 495
|
170 180 190
....*....|....*....|....*....|
gi 916601733 200 FKELKDKYNISFIYITHDLstayYVSDYIA 229
Cdd:PRK13409 496 IRRIAEEREATALVVDHDI----YMIDYIS 521
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
7-267 |
4.62e-08 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 54.78 E-value: 4.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 7 LEVKGVSKVFRIGG--MLRGkkmtavdnVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKN 84
Cdd:PTZ00243 1309 LVFEGVQMRYREGLplVLRG--------VSFRIAPREKV--GIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGR---EIG 1375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 85 GYDPKQFKLDVQPIFQNPYeSF--SPRKAVDTYLYNTALKLGIAknMEEAKQKADEALKSVGMSLAVVQGkySAQFSGGE 162
Cdd:PTZ00243 1376 AYGLRELRRQFSMIPQDPV-LFdgTVRQNVDPFLEASSAEVWAA--LELVGLRERVASESEGIDSRVLEG--GSNYSVGQ 1450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 163 LQRVSIARALITR-PKLIIADEPVAAIDASMKMNIVNLFKELKDKYNIsfIYITHDLST-AYYvsDYIATLYRGGLIEYG 240
Cdd:PTZ00243 1451 RQLMCMARALLKKgSGFILMDEATANIDPALDRQIQATVMSAFSAYTV--ITIAHRLHTvAQY--DKIIVMDHGAVAEMG 1526
|
250 260
....*....|....*....|....*..
gi 916601733 241 PAKELMDYPAHPYTELLmEAVPRVGDK 267
Cdd:PTZ00243 1527 SPRELVMNRQSIFHSMV-EALGRSEAK 1552
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
47-246 |
4.81e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 54.57 E-value: 4.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 47 IVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKqFKLDVQPifQNPYesfsprkavdtyLYNTALKLgia 126
Cdd:TIGR00957 1317 IVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR-FKITIIP--QDPV------------LFSGSLRM--- 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 127 kNMEEAKQKADEALkSVGMSLAVVQGKYSAQ--------------FSGGELQRVSIARALITRPKLIIADEPVAAIDASM 192
Cdd:TIGR00957 1379 -NLDPFSQYSDEEV-WWALELAHLKTFVSALpdkldhecaeggenLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 193 KMNIVNLFKELKDkyNISFIYITHDLSTayyVSDY--IATLYRGGLIEYGPAKELM 246
Cdd:TIGR00957 1457 DNLIQSTIRTQFE--DCTVLTIAHRLNT---IMDYtrVIVLDKGEVAEFGAPSNLL 1507
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
30-236 |
5.15e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 54.06 E-value: 5.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPD-GGDIILNGRSYSDKNGYDPKQFKLDVQPifqnpyesfSP 108
Cdd:TIGR02633 276 VDDVSFSLRRGE--ILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPVDIRNPAQAIRAGIAMVP---------ED 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 109 RKAvdtylYNTALKLGIAKNMEEA-------KQKADEA--LKSVGMSLAVVQGKYSAQF------SGGELQRVSIARALI 173
Cdd:TIGR02633 345 RKR-----HGIVPILGVGKNITLSvlksfcfKMRIDAAaeLQIIGSAIQRLKVKTASPFlpigrlSGGNQQKAVLAKMLL 419
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 916601733 174 TRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYIATLYRGGL 236
Cdd:TIGR02633 420 TNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
96-245 |
6.70e-08 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 53.59 E-value: 6.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 96 QPIFQNPYESFSPRKavDTYLYNTALKLgiakNMEEAKQKADEALKSvgMSLAVVQGKYSAQFSGGELQRVSIARALITR 175
Cdd:NF000106 91 RPVR*GRRESFSGRE--NLYMIGR*LDL----SRKDARARADELLER--FSLTEAAGRAAAKYSGGMRRRLDLAASMIGR 162
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 176 PKLIIADEPVAAIDASMKMNIVNLFKELKdKYNISFIYITHDLSTAYYVSDYIATLYRGGLIEYGPAKEL 245
Cdd:NF000106 163 PAVLYLDEPTTGLDPRTRNEVWDEVRSMV-RDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
44-203 |
7.11e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 52.18 E-value: 7.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysdkngydpkqfkldvqpifqnPYESFSPRKAVdTYL-YNTALK 122
Cdd:PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGG-----------------------DIDDPDVAEAC-HYLgHRNAMK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 123 --LGIAKNME-------EAKQKADEALKSVGMS-LAVVQGKYsaqFSGGELQRVSIARALITRPKLIIADEPVAAIDASm 192
Cdd:PRK13539 86 paLTVAENLEfwaaflgGEELDIAAALEAVGLApLAHLPFGY---LSAGQKRRVALARLLVSNRPIWILDEPTAALDAA- 161
|
170
....*....|.
gi 916601733 193 kmnIVNLFKEL 203
Cdd:PRK13539 162 ---AVALFAEL 169
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
157-232 |
7.20e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 53.66 E-value: 7.20e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 916601733 157 QFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKEL-KDKYnisFIYITHDLSTAYYVSDYIATLY 232
Cdd:PRK13409 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELaEGKY---VLVVEHDLAVLDYLADNVHIAY 285
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
34-247 |
7.82e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 54.18 E-value: 7.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 34 SLKIGKDKPVILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSysdknGYDPKQFKLDVQPIFQNpyesfsprkavd 113
Cdd:TIGR00957 656 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV-----AYVPQQAWIQNDSLREN------------ 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 114 tYLYNTALKLGIAKN-MEEAKQKADEALKSVGMSLAVvqGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASM 192
Cdd:TIGR00957 719 -ILFGKALNEKYYQQvLEACALLPDLEILPSGDRTEI--GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 193 KM----NIVNLFKELKDKyniSFIYITHDLSTAYYVsDYIATLYRGGLIEYGPAKELMD 247
Cdd:TIGR00957 796 GKhifeHVIGPEGVLKNK---TRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELLQ 850
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
32-245 |
8.28e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 54.15 E-value: 8.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR-SYSDKNGY-DPKQFKLDVqpIFQNPYesfspr 109
Cdd:TIGR01271 444 NISFKLEKGQ--LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRiSFSPQTSWiMPGTIKDNI--IFGLSY------ 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 110 kavDTYLYNTALKlgiAKNMEEAKQKADEALKSVGMSLAVVqgkysaqFSGGELQRVSIARALITRPKLIIADEPVAAID 189
Cdd:TIGR01271 514 ---DEYRYTSVIK---ACQLEEDIALFPEKDKTVLGEGGIT-------LSGGQRARISLARAVYKDADLYLLDSPFTHLD 580
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 190 ASMKMNIVN--LFKELKDKYNISFIYITHDLSTAyyvsDYIATLYRGGLIEYGPAKEL 245
Cdd:TIGR01271 581 VVTEKEIFEscLCKLMSNKTRILVTSKLEHLKKA----DKILLLHEGVCYFYGTFSEL 634
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
24-261 |
9.32e-08 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 53.31 E-value: 9.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 24 GKKMTAVDNVSLKIGKDkpviLSIVGESGCGKSTLCKMILKLhTPDGGDIILNGRSYSDkngYDPKQFKLDVQPIFQNPY 103
Cdd:PRK11174 362 GKTLAGPLNFTLPAGQR----IALVGPSGAGKTSLLNALLGF-LPYQGSLKINGIELRE---LDPESWRKHLSWVGQNPQ 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 104 esfsprkavdtyLYNTALKLGIA---KNMEEA-------KQKADEALKSVGMSLAVVQGKYSAQFSGGELQRVSIARALI 173
Cdd:PRK11174 434 ------------LPHGTLRDNVLlgnPDASDEqlqqaleNAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 174 TRPKLIIADEPVAAIDA-SMKMNIVNLFKELKDKyniSFIYITHDLSTAYYVsDYIATLYRGGLIEYGPAKELMDYPAhP 252
Cdd:PRK11174 502 QPCQLLLLDEPTASLDAhSEQLVMQALNAASRRQ---TTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQAGG-L 576
|
....*....
gi 916601733 253 YTELLMEAV 261
Cdd:PRK11174 577 FATLLAHRQ 585
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
32-234 |
1.57e-07 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 50.93 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKDKPVIlsIVGESGCGKSTLCKMILKLHTPDGGDIILNGR-SYSDkngydpkqfkldvqpifQNPYesfsprk 110
Cdd:cd03250 23 DINLEVPKGELVA--IVGPVGSGKSSLLSALLGELEKLSGSVSVPGSiAYVS-----------------QEPW------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 111 avdtyLYNTALKLGIAKNMEEAKQKADEALKSV--------------------GMSLavvqgkysaqfSGGELQRVSIAR 170
Cdd:cd03250 77 -----IQNGTIRENILFGKPFDEERYEKVIKACalepdleilpdgdlteigekGINL-----------SGGQKQRISLAR 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 171 ALITRPKLIIADEPVAAIDASMKMNIVN--LFKELKDKYNIsfIYITHDLSTAYYVsDYIATLYRG 234
Cdd:cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFEncILGLLLNNKTR--ILVTHQLQLLPHA-DQIVVLDNG 203
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
45-216 |
2.05e-07 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 52.44 E-value: 2.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 45 LSIVGESGCGKSTLCKMILKLHTpdggdiILNGRSYSDKNG---YDPkqfkldvqpifQNPYesFSPRKAVDTYLYNTAL 121
Cdd:TIGR00954 481 LLICGPNGCGKSSLFRILGELWP------VYGGRLTKPAKGklfYVP-----------QRPY--MTLGTLRDQIIYPDSS 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 122 KLGIAKNMEEakQKADEALKSV--------GMSLAVVQgKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMK 193
Cdd:TIGR00954 542 EDMKRRGLSD--KDLEQILDNVqlthilerEGGWSAVQ-DWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618
|
170 180
....*....|....*....|...
gi 916601733 194 MNIVNLFKElkdkYNISFIYITH 216
Cdd:TIGR00954 619 GYMYRLCRE----FGITLFSVSH 637
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
4-184 |
2.45e-07 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 52.24 E-value: 2.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 4 DYLLEVKGVSKVFriggmlrGKKMTaVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILnGR----S 79
Cdd:TIGR03719 320 DKVIEAENLTKAF-------GDKLL-IDDLSFKLPPGG--IVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GEtvklA 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 80 YSDkngydpkQFKldvqpifqnpyESFSPRKAVdtylyntalklgiaknMEEAKQKADEALksVG----MSLAVV----- 150
Cdd:TIGR03719 389 YVD-------QSR-----------DALDPNKTV----------------WEEISGGLDIIK--LGkreiPSRAYVgrfnf 432
|
170 180 190
....*....|....*....|....*....|....*...
gi 916601733 151 ----QGKYSAQFSGGELQRVSIARALITRPKLIIADEP 184
Cdd:TIGR03719 433 kgsdQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
41-220 |
2.75e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 49.29 E-value: 2.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 41 KPVILSIVGESGCGKSTLCKMILKLHTPDGGDIILngrsysdkngydpkqfkLDVQPIFQNPYESFsprkavdtylynta 120
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY-----------------IDGEDILEEVLDQL-------------- 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 121 lklgiaknmeeakqkadealksvgmsLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNI---- 196
Cdd:smart00382 50 --------------------------LLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLllle 103
|
170 180
....*....|....*....|....*
gi 916601733 197 -VNLFKELKDKYNISFIYITHDLST 220
Cdd:smart00382 104 eLRLLLLLKSEKNLTVILTTNDEKD 128
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
44-84 |
4.26e-07 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 51.34 E-value: 4.26e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN 84
Cdd:COG4615 360 LVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADN 400
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
28-189 |
6.28e-07 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 50.89 E-value: 6.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 28 TAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKN-------GYDPKQFKLdvqpifq 100
Cdd:NF033858 280 TAVDHVSFRIRRGE--IFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGDiatrrrvGYMSQAFSL------- 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 101 npYESFSPRKavdtylyNTAL--KL-GIAKnmEEAKQKADEALKSVGmsLAVVQGKYSAQFSGGELQRVSIARALITRPK 177
Cdd:NF033858 351 --YGELTVRQ-------NLELhaRLfHLPA--AEIAARVAEMLERFD--LADVADALPDSLPLGIRQRLSLAVAVIHKPE 417
|
170
....*....|..
gi 916601733 178 LIIADEPVAAID 189
Cdd:NF033858 418 LLILDEPTSGVD 429
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-239 |
8.06e-07 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 50.70 E-value: 8.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 5 YLLEVKGVSKVFriggmlrGKKMTAVDNVSL------KIGkdkpvilsIVGESGCGKSTLCKMILKLHTPDGGDIILngr 78
Cdd:TIGR03719 3 YIYTMNRVSKVV-------PPKKEILKDISLsffpgaKIG--------VLGLNGAGKSTLLRIMAGVDKDFNGEARP--- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 79 SYSDKNGYDPKQFKLD-VQPIFQNPYESFSPRKAVDTYLYNTALKLG--------IAKNMEEAKQKAD------------ 137
Cdd:TIGR03719 65 QPGIKVGYLPQEPQLDpTKTVRENVEEGVAEIKDALDRFNEISAKYAepdadfdkLAAEQAELQEIIDaadawdldsqle 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 138 ---EALKSVGMSLAVvqgkysAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASmkmNIVNLFKELKDkYNISFIYI 214
Cdd:TIGR03719 145 iamDALRCPPWDADV------TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE---SVAWLERHLQE-YPGTVVAV 214
|
250 260
....*....|....*....|....*...
gi 916601733 215 THDlstAYY---VSDYIATLYRGGLIEY 239
Cdd:TIGR03719 215 THD---RYFldnVAGWILELDRGRGIPW 239
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
24-234 |
8.12e-07 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 49.25 E-value: 8.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 24 GKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILklhtpdGGDIILNGRSY-SDKNGYDPKQFKLDVQPIFQNP 102
Cdd:cd03290 11 GSGLATLSNINIRIPTGQ--LTMIVGQVGCGKSSLLLAIL------GEMQTLEGKVHwSNKNESEPSFEATRSRNRYSVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 103 YESFSPrkavdtYLYNTALKLGIAKNMEEAKQKADEALKSVGMSLAV---------VQGKYSAQFSGGELQRVSIARALI 173
Cdd:cd03290 83 YAAQKP------WLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIdllpfgdqtEIGERGINLSGGQRQRICVARALY 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 174 TRPKLIIADEPVAAIDAS-----MKMNIVNLFKElkDKYNIsfIYITHDLSTAYYvSDYIATLYRG 234
Cdd:cd03290 157 QNTNIVFLDDPFSALDIHlsdhlMQEGILKFLQD--DKRTL--VLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
1-189 |
8.81e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 50.68 E-value: 8.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 1 MANDYLLEVKGVSKVFRIGGMLRGKKMTA---------VDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGg 71
Cdd:TIGR01271 1197 LSTVLVIENPHAQKCWPSGGQMDVQGLTAkyteagravLQDLSFSVEGGQRV--GLLGRTGSGKSTLLSALLRLLSTEG- 1273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 72 DIILNGRSYSDKNGYD-PKQFKLDVQPIF---------QNPYESFSprkavDTYLYNTALKLGIAKNMEEAKQKADEALK 141
Cdd:TIGR01271 1274 EIQIDGVSWNSVTLQTwRKAFGVIPQKVFifsgtfrknLDPYEQWS-----DEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 916601733 142 SVGMSLavvqgkysaqfSGGELQRVSIARALITRPKLIIADEPVAAID 189
Cdd:TIGR01271 1349 DGGYVL-----------SNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
159-234 |
1.13e-06 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 50.05 E-value: 1.13e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 916601733 159 SGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKdKYNISFIYITHDLSTAYYVSDYIATLYRG 234
Cdd:PRK15439 405 SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA-AQNVAVLFISSDLEEIEQMADRVLVMHQG 479
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
45-246 |
1.35e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 50.12 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 45 LSIVGESGCGKSTLCKMILKLHTPDGGDIILNGrsysdkngYDPKQFKL-DVQP----IFQNP----------YESFSPR 109
Cdd:PLN03130 1268 VGIVGRTGAGKSSMLNALFRIVELERGRILIDG--------CDISKFGLmDLRKvlgiIPQAPvlfsgtvrfnLDPFNEH 1339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 110 KAVDTY--LYNTALKLGIAKNmeeakqkadealkSVGMSLAVVQGkySAQFSGGELQRVSIARALITRPKLIIADEPVAA 187
Cdd:PLN03130 1340 NDADLWesLERAHLKDVIRRN-------------SLGLDAEVSEA--GENFSVGQRQLLSLARALLRRSKILVLDEATAA 1404
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 916601733 188 I----DASMKMNIVNLFKelkdkyNISFIYITHDLSTAYYvSDYIATLYRGGLIEYGPAKELM 246
Cdd:PLN03130 1405 VdvrtDALIQKTIREEFK------SCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLL 1460
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
32-283 |
1.64e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 49.74 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIgkdkPV--ILSIVGESGCGKSTLCKMIL-KLHTPDGGDIILNGRSysdknGYDPKQ---FKLDVQP--IFQNPY 103
Cdd:PLN03130 635 NINLDV----PVgsLVAIVGSTGEGKTSLISAMLgELPPRSDASVVIRGTV-----AYVPQVswiFNATVRDniLFGSPF 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 104 ESFSPRKAVDTYLYNTALKLGIAKNMEEAkqkadealksvgmslavvqGKYSAQFSGGELQRVSIARALITRPKLIIADE 183
Cdd:PLN03130 706 DPERYERAIDVTALQHDLDLLPGGDLTEI-------------------GERGVNISGGQKQRVSMARAVYSNSDVYIFDD 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 184 PVAAIDASMKMNIVN--LFKELKDKyniSFIYITHDLSTAYYVsDYIATLYRGGLIEYGPAKELMDypAHPYTELLMEAV 261
Cdd:PLN03130 767 PLSALDAHVGRQVFDkcIKDELRGK---TRVLVTNQLHFLSQV-DRIILVHEGMIKEEGTYEELSN--NGPLFQKLMENA 840
|
250 260
....*....|....*....|....
gi 916601733 262 PRVGD--KWNQEFVMPDMESKEYA 283
Cdd:PLN03130 841 GKMEEyvEENGEEEDDQTSSKPVA 864
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
6-198 |
2.48e-06 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 49.24 E-value: 2.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 6 LLEVKGVSKVFRiggmlrGKKMTAVDNvsLKIGKDKPVILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSY----S 81
Cdd:TIGR01257 1937 ILRLNELTKVYS------GTSSPAVDR--LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIltniS 2008
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 82 DKN---GYDPKQFKLDvqpifqnpyESFSPRKavdtYLYNTALKLGIAKnmEEAKQKADEALKSVGMSLAVvqGKYSAQF 158
Cdd:TIGR01257 2009 DVHqnmGYCPQFDAID---------DLLTGRE----HLYLYARLRGVPA--EEIEKVANWSIQSLGLSLYA--DRLAGTY 2071
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 916601733 159 SGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVN 198
Cdd:TIGR01257 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWN 2111
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
32-247 |
2.68e-06 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 48.31 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGR-SYSDKNGY-DPKQFKLDVqpIFQNPYesfspr 109
Cdd:cd03291 55 NINLKIEKGE--MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRiSFSSQFSWiMPGTIKENI--IFGVSY------ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 110 kavDTYLYNTALKlgiAKNMEEAKQKADEALKSvgmslavVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAID 189
Cdd:cd03291 125 ---DEYRYKSVVK---ACQLEEDITKFPEKDNT-------VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 190 ASMKMNIVN--LFKELKDKYNISFIYITHDLSTAyyvsDYIATLYRGGLIEYGPAKELMD 247
Cdd:cd03291 192 VFTEKEIFEscVCKLMANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGTFSELQS 247
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
4-206 |
4.78e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 48.19 E-value: 4.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 4 DYLLEVKGvskvfriggmLRGKKMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDK 83
Cdd:PRK10982 248 EVILEVRN----------LTSLRQPSIRDVSFDLHKGE--ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNH 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 84 NGYDPKQ--FKLDVQPifqnpyesfspRKAVDTYLYNTALKLGIAKNMEEAKQK----ADEALKS----VGMSLAVVQGK 153
Cdd:PRK10982 316 NANEAINhgFALVTEE-----------RRSTGIYAYLDIGFNSLISNIRNYKNKvgllDNSRMKSdtqwVIDSMRVKTPG 384
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 916601733 154 YSAQ---FSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKEL--KDK 206
Cdd:PRK10982 385 HRTQigsLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELakKDK 442
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
156-236 |
6.03e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 47.62 E-value: 6.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 156 AQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKdKYNISFIYITHDLSTAYYVSDYIATLYRGG 235
Cdd:PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV-QQGVAIIVISSELPEVLGLSDRVLVMHEGK 482
|
.
gi 916601733 236 L 236
Cdd:PRK13549 483 L 483
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
26-206 |
7.35e-06 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 46.41 E-value: 7.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 26 KMTAVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRsysDKNGYDPKQFKLDVQPIFQNPYES 105
Cdd:PRK11614 17 KIQALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGK---DITDWQTAKIMREAVAIVPEGRRV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 106 FSpRKAVDTylyNTALKlGIAKNMEEAKQKAdEALKSVGMSLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPV 185
Cdd:PRK11614 92 FS-RMTVEE---NLAMG-GFFAERDQFQERI-KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
|
170 180
....*....|....*....|.
gi 916601733 186 AAIDASMKMNIVNLFKELKDK 206
Cdd:PRK11614 166 LGLAPIIIQQIFDTIEQLREQ 186
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
45-258 |
1.08e-05 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 46.06 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 45 LSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSdKNGYDPKQFKLDVqpIFQNPYeSFS---------PRKAVDTY 115
Cdd:cd03288 50 VGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS-KLPLHTLRSRLSI--ILQDPI-LFSgsirfnldpECKCTDDR 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 116 LYNtALKLGIAKNMeeakqkadeaLKSVGMSLAVVQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAIDASMKmN 195
Cdd:cd03288 126 LWE-ALEIAQLKNM----------VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE-N 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 916601733 196 IVN--LFKELKDKYNISFIYITHDLSTAyyvsDYIATLYRGGLIEYGPAKELMDYPAHPYTELLM 258
Cdd:cd03288 194 ILQkvVMTAFADRTVVTIAHRVSTILDA----DLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
28-189 |
1.26e-05 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 46.00 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 28 TAVDNVSLKIGKDKPVilSIVGESGCGKSTLCKMILKLHTPDGgDIILNGRSYSDKN--------GYDPKQFKLDVQPIF 99
Cdd:cd03289 18 AVLENISFSISPGQRV--GLLGRTGSGKSTLLSAFLRLLNTEG-DIQIDGVSWNSVPlqkwrkafGVIPQKVFIFSGTFR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 100 QN--PYESFSprkavDTYLYNTALKLGIAKNMEEAKQKADEALKSVGMSLavvqgkysaqfSGGELQRVSIARALITRPK 177
Cdd:cd03289 95 KNldPYGKWS-----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVL-----------SHGHKQLMCLARSVLSKAK 158
|
170
....*....|..
gi 916601733 178 LIIADEPVAAID 189
Cdd:cd03289 159 ILLLDEPSAHLD 170
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
44-190 |
1.30e-05 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 45.57 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGrsysdkngydpkqfkldvQPIfqnpyesfspRKAVDTYLYN----- 118
Cdd:PRK13538 29 LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG------------------EPI----------RRQRDEYHQDllylg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 119 ---------TALK-----LGIAKNMEEAKqkADEALKSVGMS----LAVvqgkysAQFSGGELQRVSIARALITRPKLII 180
Cdd:PRK13538 81 hqpgiktelTALEnlrfyQRLHGPGDDEA--LWEALAQVGLAgfedVPV------RQLSAGQQRRVALARLWLTRAPLWI 152
|
170
....*....|
gi 916601733 181 ADEPVAAIDA 190
Cdd:PRK13538 153 LDEPFTAIDK 162
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
7-75 |
1.42e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 46.65 E-value: 1.42e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 7 LEVKGVSKVFriggmlrGKKMTaVDNVSLKIGKDKpvILSIVGESGCGKSTLCKMILKLHTPDGGDIIL 75
Cdd:PRK11819 325 IEAENLSKSF-------GDRLL-IDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
24-205 |
4.80e-05 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 43.39 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 24 GKKMTAVDNVSlkiGKDKP-VILSIVGESGCGKSTLCKmILKLHTPDG---GDIILNGR----SYSDKNGYDPKQfklDV 95
Cdd:cd03232 17 GGKRQLLNNIS---GYVKPgTLTALMGESGAGKTTLLD-VLAGRKTAGvitGEILINGRpldkNFQRSTGYVEQQ---DV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 96 QPIFQNPYES--FSprkavdtylyntALKLGIakNMEEAKqkadealksvgmslavvqgkysaqfsggelqRVSIARALI 173
Cdd:cd03232 90 HSPNLTVREAlrFS------------ALLRGL--SVEQRK-------------------------------RLTIGVELA 124
|
170 180 190
....*....|....*....|....*....|..
gi 916601733 174 TRPKLIIADEPVAAIDASMKMNIVNLFKELKD 205
Cdd:cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD 156
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
159-272 |
5.17e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 44.94 E-value: 5.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 159 SGGELQRVSIARALITRPKLIIADEPVAAIDASmkmNIVNLFKELKDkYNISFIYITHDLSTAYYVSDYIATLYRGGLIE 238
Cdd:PRK11147 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIE---TIEWLEGFLKT-FQGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233
|
90 100 110
....*....|....*....|....*....|....
gi 916601733 239 YgPAkelmDYPAhpYTELLMEAVpRVGDKWNQEF 272
Cdd:PRK11147 234 Y-PG----NYDQ--YLLEKEEAL-RVEELQNAEF 259
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
44-126 |
6.27e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 41.94 E-value: 6.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILngrsYSDKNGYDPKQFKLDVQPIFQNPYESFSPRKAVDTYLYNTALKL 123
Cdd:pfam13401 7 ILVLTGESGTGKTTLLRRLLEQLPEVRDSVVF----VDLPSGTSPKDLLRALLRALGLPLSGRLSKEELLAALQQLLLAL 82
|
...
gi 916601733 124 GIA 126
Cdd:pfam13401 83 AVA 85
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
32-245 |
9.50e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 44.20 E-value: 9.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIgkdkPV--ILSIVGESGCGKSTLCKMIL-KLHTPDGGDIILNGRSysdknGYDPKQ---FKLDVQP--IFQNPY 103
Cdd:PLN03232 635 DINLEI----PVgsLVAIVGGTGEGKTSLISAMLgELSHAETSSVVIRGSV-----AYVPQVswiFNATVREniLFGSDF 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 104 ESFSPRKAVDTYLYNTALKLGIAKNMEEAkqkadealksvgmslavvqGKYSAQFSGGELQRVSIARALITRPKLIIADE 183
Cdd:PLN03232 706 ESERYWRAIDVTALQHDLDLLPGRDLTEI-------------------GERGVNISGGQKQRVSMARAVYSNSDIYIFDD 766
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 916601733 184 PVAAIDASMKMNIVN--LFKELKDKYNISFIYITHDLStayyVSDYIATLYRGGLIEYGPAKEL 245
Cdd:PLN03232 767 PLSALDAHVAHQVFDscMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEGMIKEEGTFAEL 826
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
44-206 |
1.07e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 42.63 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 44 ILSIVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFKLDVQPIFQNPYESFSPRKAVDTYLYNTALKL 123
Cdd:PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 124 giaknmeeakqkaDE--ALKSVGMSLAVVQGKYSAqfsgGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFK 201
Cdd:PRK13540 109 -------------TElcRLFSLEHLIDYPCGLLSS----GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ 171
|
....*
gi 916601733 202 ELKDK 206
Cdd:PRK13540 172 EHRAK 176
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
30-239 |
2.12e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 42.85 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 30 VDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILngrsysdkngydPKQFKLdvqpIFQNPYESFSPR 109
Cdd:PRK10636 17 LDNATATINPGQKVGL--VGKNGCGKSTLLALLKNEISADGGSYTF------------PGNWQL----AWVNQETPALPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 110 KAVDtYLYNTALKLgiaKNMEEAKQKADEalKSVGMSLAVVQGKYSA-----------------------------QFSG 160
Cdd:PRK10636 79 PALE-YVIDGDREY---RQLEAQLHDANE--RNDGHAIATIHGKLDAidawtirsraasllhglgfsneqlerpvsDFSG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 916601733 161 GELQRVSIARALITRPKLIIADEPVAAIDASMkmnIVNLFKELKDkYNISFIYITHDLSTAYYVSDYIATLYRGGLIEY 239
Cdd:PRK10636 153 GWRMRLNLAQALICRSDLLLLDEPTNHLDLDA---VIWLEKWLKS-YQGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
29-183 |
2.40e-04 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 42.65 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 29 AVDNVSLKIGKDKPVILsiVGESGCGKSTLCKMILKLHTPDGGDIILNGRSYSDKNGYDPKQFkldvqpifqnpyesFSp 108
Cdd:PRK10522 338 SVGPINLTIKRGELLFL--IGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL--------------FS- 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 109 rkAV--DTYLYNTALKlgiAKNMEEAKQKADEALKSVGMS--LAVVQGKYS-AQFSGGELQRVSIARALITRPKLIIADE 183
Cdd:PRK10522 401 --AVftDFHLFDQLLG---PEGKPANPALVEKWLERLKMAhkLELEDGRISnLKLSKGQKKRLALLLALAEERDILLLDE 475
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
159-228 |
8.83e-04 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 41.05 E-value: 8.83e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 159 SGGELQRVSIARALITRPKLIIADEPVAAIDASMKMNIVNLFKELKDKyNISFIYITHDLSTAYYVSDYI 228
Cdd:PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRI 466
|
|
| PRK07429 |
PRK07429 |
phosphoribulokinase; Provisional |
40-69 |
1.68e-03 |
|
phosphoribulokinase; Provisional
Pssm-ID: 180975 Cd Length: 327 Bit Score: 39.61 E-value: 1.68e-03
10 20 30
....*....|....*....|....*....|
gi 916601733 40 DKPVILSIVGESGCGKSTLCKMILKLHTPD 69
Cdd:PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEE 35
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
32-249 |
2.04e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 40.15 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 32 NVSLKIGKDKpviLSIV-GESGCGKSTLCKMILklhtpdGGDIILNGRSYSDKN-GYDPKQFKLDVQPIFQNPYeSFSPR 109
Cdd:PTZ00243 678 DVSVSVPRGK---LTVVlGATGSGKSTLLQSLL------SQFEISEGRVWAERSiAYVPQQAWIMNATVRGNIL-FFDEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 916601733 110 KAVDtylyntalklgIAKNMEEAKQKADEALKSVGMSLAVvqGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAID 189
Cdd:PTZ00243 748 DAAR-----------LADAVRVSQLEADLAQLGGGLETEI--GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 916601733 190 ASMKMNIVN--LFKELKDKYNISFIYITHDLSTAyyvsDYIATLYRGGLIEYGPAKELMDYP 249
Cdd:PTZ00243 815 AHVGERVVEecFLGALAGKTRVLATHQVHVVPRA----DYVVALGDGRVEFSGSSADFMRTS 872
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
150-189 |
2.06e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 39.84 E-value: 2.06e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 916601733 150 VQGKYSAQFSGGELQRVSIARALITRPKLIIADEPVAAID 189
Cdd:PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
|
| |
