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Conserved domains on  [gi|91214168|ref|YP_538792|]
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photosystem II protein T (chloroplast) [Glycine max]

Protein Classification

photosystem II protein T( domain architecture ID 10000029)

photosystem II reaction center protein T (PSII-T) may play a role in the dimerization of PSII

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psbT CHL00031
photosystem II protein T
 1-33 2.02e-13

photosystem II protein T


:

Pssm-ID: 176972  Cd Length: 33  Bit Score: 55.84  E-value: 2.02e-13
                        10        20        30
                ....*....|....*....|....*....|...
gi 91214168   1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
Cdd:CHL00031  1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
 
Name Accession Description Interval E-value
psbT CHL00031
photosystem II protein T
 1-33 2.02e-13

photosystem II protein T


Pssm-ID: 176972  Cd Length: 33  Bit Score: 55.84  E-value: 2.02e-13
                        10        20        30
                ....*....|....*....|....*....|...
gi 91214168   1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
Cdd:CHL00031  1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
PsbT pfam01405
Photosystem II reaction centre T protein; The exact function of this protein is unknown. It ...
 1-29 9.30e-08

Photosystem II reaction centre T protein; The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity under adverse growth conditions.


Pssm-ID: 426247  Cd Length: 29  Bit Score: 41.55  E-value: 9.30e-08
                         10        20
                 ....*....|....*....|....*....
gi 91214168    1 MEALVYTFLLVSTLGIIFFAIFFREPPKV 29
Cdd:pfam01405  1 MEALVYTLILTLTLGTLFFAIAFRDPPRI 29
PsbT COG5731
Photosystem II reaction center protein T, PsbT/Ycf8 [Energy production and conversion]; ...
 1-33 7.84e-06

Photosystem II reaction center protein T, PsbT/Ycf8 [Energy production and conversion]; Photosystem II reaction center protein T, PsbT/Ycf8 is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444441  Cd Length: 33  Bit Score: 36.61  E-value: 7.84e-06
                       10        20        30
               ....*....|....*....|....*....|...
gi 91214168  1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
Cdd:COG5731  1 MESIAYILILALAIGTLFFAIAFREPPRIGKKK 33
 
Name Accession Description Interval E-value
psbT CHL00031
photosystem II protein T
 1-33 2.02e-13

photosystem II protein T


Pssm-ID: 176972  Cd Length: 33  Bit Score: 55.84  E-value: 2.02e-13
                        10        20        30
                ....*....|....*....|....*....|...
gi 91214168   1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
Cdd:CHL00031  1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
PsbT pfam01405
Photosystem II reaction centre T protein; The exact function of this protein is unknown. It ...
 1-29 9.30e-08

Photosystem II reaction centre T protein; The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity under adverse growth conditions.


Pssm-ID: 426247  Cd Length: 29  Bit Score: 41.55  E-value: 9.30e-08
                         10        20
                 ....*....|....*....|....*....
gi 91214168    1 MEALVYTFLLVSTLGIIFFAIFFREPPKV 29
Cdd:pfam01405  1 MEALVYTLILTLTLGTLFFAIAFRDPPRI 29
PsbT COG5731
Photosystem II reaction center protein T, PsbT/Ycf8 [Energy production and conversion]; ...
 1-33 7.84e-06

Photosystem II reaction center protein T, PsbT/Ycf8 [Energy production and conversion]; Photosystem II reaction center protein T, PsbT/Ycf8 is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444441  Cd Length: 33  Bit Score: 36.61  E-value: 7.84e-06
                       10        20        30
               ....*....|....*....|....*....|...
gi 91214168  1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
Cdd:COG5731  1 MESIAYILILALAIGTLFFAIAFREPPRIGKKK 33
psbT PRK11875
photosystem II reaction center protein T; Reviewed
 1-29 1.57e-04

photosystem II reaction center protein T; Reviewed


Pssm-ID: 183353  Cd Length: 31  Bit Score: 33.51  E-value: 1.57e-04
                        10        20
                ....*....|....*....|....*....
gi 91214168   1 MEALVYTFLLVSTLGIIFFAIFFREPPKV 29
Cdd:PRK11875  1 MESFAYILILTLALVTLFFAIAFRDPPKI 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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